TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATAACAAATGGCTGAGAAGCACCTGAAAAAATGTT
CAGCATCCTCAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACCCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGACAAAGAAGAATACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTTTATAACCACTCTGGAAATTAGTCTGGTGGTTCCTCAGA
AAGTTGGACATAGTACTATCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCATAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATAT
TCATAGCAGGCTTATTTATAATAGCCATAAGCTGGAAAGAACCCAGATGT
CCCTCAACAGAGGAATGGATACAGAAAATGTGCTACATTTACACAATGGA
GTACTACTTAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTACCCCAATCACAAAAG
AACTCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACAT
AGAATACCCAAGATATAAGATACAATTTGTGATACACATGAAACTCAAGA
ATAACAAAGACTAAAGTGTGGAGACTTTGCCCCTTCTTAGAACTG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGGCCCCTCTTATAAGCCAACATGAA
AGTTTATTTCTACCATTTTTATGTTTTGGCCAATTTGAGATACTTATAAA
CTATTTAATTATCTAAGTGGACATTCAGGACTCCCAGGGCTATACAGAGA
AATCCTGTCTCCAAAAAAGAAAAAAACAAACAAACAAACAAAAAACCAGG
ACTCTTAATGTAAGGAAAATACAGTTTGTTTACACCGTAAGCTATAATGA
AAATTGCATTACATGTGGTAAAGGATATAGCTTTCCTTTTCCAGATTTTC
TAATAAGCAAGCTGACTCTGACGCAGCAGTGTGGGAACACAGTTGCTCAG
TGAGAGACAATAATGGGTCCAATTTTAAAACAGCTGCTCATGTATGAATA
CACAAAAACTAAACTAAACAGCAATGAAATGCTATTACGTGTGTGCTTCT
CTCAGTGATTACAGGAGAGCTACGATGCAGATGACTGAATGGTGCAATGG
GTGACAACCTGGCAGAGATAACATCTCCATCTTTAAAATAGAAGCCAAGG
ACCACAAAAACATATTACCACCCACAAGAACCACACTACTGCTTCTCCTT
GTAGCATGACTAGAAATGTGAATTGCTTCTATTATTCTCTTGCTTAATGC
AACTTAACTGTTTTATCCATTTTTAAAAAAAAGAAAGAAAGAAG

Query= MSMg01no548_f04.g1 MSMg01no548_f04.g1 CHROMAT_FILE:
MSMg01no548_f04.g1 PHD_FILE: MSMg01no548_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:13 2005
         (655 letters)



>mm_chr1_46587329_46588385
          Length = 1057

 Score =  928 bits (480), Expect = 0.0
 Identities = 611/656 (93%), Gaps = 11/656 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    agtggcccctcttat-aagccaacatgaaagtttatttctaccat-ttttatgt-tttgg 57
            ||||||||||||||| || |||||||||||||||||||||||  | |||| ||| |||||
Sbjct: 1003 agtggcccctcttatcaa-ccaacatgaaagtttatttctac--tgtttt-tgtgtttgg 948

                                                                        
Query: 58   ccaatttgagatacttataaactatttaattatctaagtggacattcaggactcccaggg 117
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  cctatttgagatacttataaactatttaattatctaagtggacattcaggactcccaggg 888

                                                                        
Query: 118  ctatacagagaaatcctgtctccaaaaaagaaaa--aaacaaacaaacaaac-aaaaaac 174
            ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||
Sbjct: 887  ctatacagagaaatcctgtctccaaaaaagaaaaacaaacaaacaaacaaacaaaaaaac 828

                                                                        
Query: 175  caggactcttaatgtaaggaaaatacagtttgtttacaccgtaagctataatgaaaattg 234
            |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 827  caggactcttaatgtaagaaaaatacagtttgtttacaccgtaaactataatgaaaattg 768

                                                                        
Query: 235  cattacatgtggtaaaggatatagctttccttttccagattttctaataagcaagctgac 294
            ||||  ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 767  cattgtatgtggtaaagaatataactttcctcttccagattttctaataagcaagctgac 708

                                                                        
Query: 295  tctgacgcagcagtgtgggaacacagttgctcagtgagagacaataatgggtccaatttt 354
            ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 707  tctgacatagcagtgtgggaacacagtggctcagtgagagacaataatggatccaatttt 648

                                                                        
Query: 355  aaaacagctgctcatgtatgaatacacaaaaactaaactaaacagcaatgaaatgctatt 414
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  aaaacagctgcacatgtatgaatacacaaaaactaaactaaacagcaatgaaatgctatt 588

                                                                        
Query: 415  acgtgtgtgcttctctcagtgattacaggagagctacgatgcagatgactgaatggtgca 474
            | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 587  aagtgtgtgcttctctcagagattacaggagagctaccatgcagatgactgaatggtgca 528

                                                                        
Query: 475  atgggtgacaacctggcagagataacatctccatctttaaaatagaagccaaggaccaca 534
            |||||||| ||  |||||||||||||| |||||||||||||||| ||||  |||||||||
Sbjct: 527  atgggtgaaaaattggcagagataacaactccatctttaaaataaaagctgaggaccaca 468

                                                                        
Query: 535  aaaacatattaccacccaca-agaaccacactactgcttctccttgtagcatgactagaa 593
              |||||||  ||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct: 467  ggaacatatccccacccacagagaaccaccctactgcttctccttgaagcatgactagaa 408

                                                                    
Query: 594  atgtgaattgcttctattattctcttgcttaatgcaacttaactgttttatccatt 649
             |||||||||||||||||||||| || ||||||| |||| ||||||||||||||||
Sbjct: 407  ttgtgaattgcttctattattcttttacttaatgtaactcaactgttttatccatt 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1057
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1047
Effective search space:   675315
Effective search space used:   675315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)