BAC Information

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BAC

Clone NameMSMg01-548H11
Chromosome1 (Build37)
Map Location 167,081,819 - 167,082,239
singlet/doubletsinglet
Overlap geneTbx19
Upstream geneF5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik
Downstream geneSft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548H11.T7 (MSMg01no548_h11.b1)MSMg01-548H11.TJ (MSMg01no548_h11.g1)
ACCAG612805AG612806
length734730
length of high quality
(start - end)
432 (71 - 502)521 (75 - 595)
definitionCHROMAT_FILE: MSMg01no548_h11.b1 PHD_FILE: MSMg01no548_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:23 2005CHROMAT_FILE: MSMg01no548_h11.g1 PHD_FILE: MSMg01no548_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGCATTTTCTGAACCTCAGGTTCATATAGTCCGTGTTGGAG
GCGCCCATCGAATGGTCATGAACTGCTCATTCCCTGAAACTCAGTTCATC
GCTGTGACTGCCTATCAGAATGAGGAGGTAGACGGGCGTTTGTGTCTGTG
CCTGTGAACACGAGTGTGTGTGTCTATGCCTGTCCCCCCCCTCCCCCCCC
GCGCCTCAACCCGAGTATCGATGTGTGTGAGTGTCACACGGAAGAGCATG
TGTTGGAATTGGTGGGGAATCTTTTTATTTAAGCAAGACTGAACGGAATT
TAGAGTTTTGAGGATTCTGACGCTCACATCAGTGATAGGGCTGAACAGCG
AGGTGCGGGTAGAGGCTCCAATGCCTGTCTGCCAAAGGCCCGTATGTTAG
TAAGCTTTCTGTCGCTACTACAGGTATAGGAGACAATACAGAGAAAGGCT
CACCTAGTAGACTGTTTTGGAGACTCCAGTACAGGTCTAAATTACTGTTA
TGGGGGAAACACCTCCCCAAATTCTTTCCAAGGGCTTGTCTCAGTAATCT
GAAGACCTCTGACTACGCCCCATCTCCTCAACATTCCACCAGCTCCCAGG
GGCGCCAAGCCTTCCCACCTGGGCCTTTTGGAACAGTCTCAAGATCCACA
CTATTAGCAGCCCACCAAAAAGAGCCCTCCCCTG
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACAGGAG
TACCAGTGAGTACAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAAG
GAAAGTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGG
TATGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCCTTTTGTTCTTTT
TCACATGTTATCAAGTGATTAAGATAGGGTTGAAAATTCTGGATGAAGTT
CAGGACAGTCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGCAAAGAG
AAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCACGGGTCTTAAAC
CCGAAGAAAAGTTAAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGA
AAGGAAAAGAAAAAAGAAAAGAAAAAAGATCAATTAGAGAAGCCAGTTCT
TAGTAGTTCTGAATCAGATGAAAAGGCTATTAGGGCCTGGAAGGCGCTCT
CCCGAGCAGGTAAAGCCACTGGACAATTAACAAAGATCGTCCAGGGACCT
TAGGAGTCCTTCTCAGATTTTGTGGCCAGTATGACAGAGGCAGGCTCTTG
CAGCCTACAAGGTCTTATTGTCCACCCTGGAGTTGTAGATCAGGATTATA
AAGGGGAACTTCAGGTCCTCTGTTCTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_h11.b1 MSMg01no548_h11.b1 CHROMAT_FILE:
MSMg01no548_h11.b1 PHD_FILE: MSMg01no548_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:23 2005
         (432 letters)



>mm_chr1_167081486_167082324
          Length = 839

 Score =  698 bits (361), Expect = 0.0
 Identities = 409/439 (93%), Gaps = 25/439 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctcaggttcatatagtccgtgttggaggcgcccatcgaatggtcatgaactgctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aacctcaggttcatatagtccgtgttggaggcgcccatcgaatggtcatgaactgctcat 695

                                                                       
Query: 61  tccctgaaactcagttcatcgctgtgactgcctatcagaatgaggaggtagacgggcgtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 694 tccctgaaactcagttcatcgctgtgactgcctatcagaatgaggaggtagacgg----- 640

                                                                       
Query: 121 tgtgtctgtgcctgtgaacacga--gtgtgtgtgtctatgcctgt----cccccccctcc 174
                        ||||||||||  ||||||||||||||||||||    |||||||| ||
Sbjct: 639 -------------gtgaacacgagtgtgtgtgtgtctatgcctgtgcccccccccccccc 593

                                                                       
Query: 175 ccccccgcgcctcaacccgagtatcgatgtgtgtgagtgtcacacggaagagcatgtgtt 234
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ccccccccgcctcaacccgagtatcgatgtgtgtgagtgtcacacggaagagcatgtgtt 533

                                                                       
Query: 235 ggaattggtggggaatctttttatt-taagcaagactgaacggaatttagagttttgagg 293
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 532 ggaattggtggggaatctttttattgcaagcaagactgaacggaatttagagttttgagg 473

                                                                       
Query: 294 attctgacgctcacatcagtgatagggctgaacagcgaggtgcgggtagaggctccaatg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 attctgacgctcacatcagtgatagggctgaacagcgaggtgcgggtagaggctccaatg 413

                                                                       
Query: 354 cctgtctgccaaaggcccgtatgttagtaagctttctgtcgctactacaggtataggaga 413
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 412 cctgtctgccaaaggcccgtacgttagtgagctttctgtcgctactacaggtataggaga 353

                              
Query: 414 caatacagagaaaggctca 432
           |||||||||||||||||||
Sbjct: 352 caatacagagaaaggctca 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 839
Length adjustment: 9
Effective length of query: 423
Effective length of database: 830
Effective search space:   351090
Effective search space used:   351090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)