Query= MSMg01no548_h21.b1 MSMg01no548_h21.b1 CHROMAT_FILE:
MSMg01no548_h21.b1 PHD_FILE: MSMg01no548_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:25 2005
(545 letters)
>mm_chr1_94576762_94577706
Length = 945
Score = 965 bits (499), Expect = 0.0
Identities = 528/541 (97%), Gaps = 6/541 (1%)
Strand = Plus / Plus
Query: 5 gaattccagactacatttcacgtgtaagtctaggtgagcctgtggggtccacagtctaga 64
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagactacagcccatgagtaagtctaggtgagcctgtggggtccacagtctaga 264
Query: 65 gtctgatatttagggaaggcagagaaccccaatctaggattgctcaactgggatccaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtctgatatttagggaaggcagagaaccccaatctaggattgctcaactgggatccaaaa 324
Query: 125 atctcactcctgtttgggaagcaggcagtgtttgtatctgtgatcgatttcaggcccagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctcactcctgtttgggaagcaggcagtgtttgtatctgtgatcgatttcaggcccagt 384
Query: 185 ttggatctgtgatcaatttcccggctccttcttggctcttaagcatttacttcccagagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggatctgtgatcaatttcccggctccttcttggctcttaagcatttacttcccagagt 444
Query: 245 gctaccttgtgccccaaatggattcttgttgctagatcccagctgggtgagtattccacg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctaccttgtgccccaaatggattcttgttgctagatcccagctgggtgagtattccacg 504
Query: 305 gatgtcttctgcccccccccccccgtgataccccgttttacacaaagaggctgcagctgc 364
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgtcttctgccccccc------gtgataccccgttttacacaaagaggctgcagctgc 558
Query: 365 aagtccccccttcagccccagcatcaccatctaaaaatagttcccgccggggcatttcca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtccccccttcagccccagcatcaccatctaaaaatagttcccgccggggcatttcca 618
Query: 425 ttcagaagccaccagaagctgcaccccccccaaacccctccccaccctccctccaccccg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttcagaagccaccagaagctgcaccccccccaaacccctccccaccctccctccaccccg 678
Query: 485 gctcaaagagcatctggtggatcctgagtcttcactgccctaatcaatatgtggaggaga 544
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 679 gctcaaagagcatctggtggatcctgagtcttcactgacctaatcaaaatgtggaggaga 738
Query: 545 g 545
|
Sbjct: 739 g 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_h21.g1 MSMg01no548_h21.g1 CHROMAT_FILE:
MSMg01no548_h21.g1 PHD_FILE: MSMg01no548_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:25 2005
(371 letters)
>mm_chr1_94719918_94720692
Length = 775
Score = 671 bits (347), Expect = 0.0
Identities = 367/375 (97%), Gaps = 4/375 (1%)
Strand = Plus / Minus
Query: 1 cagtaaaacccaagagaacaggg---ta-ttcctgaggggtaagatggtagactggagtc 56
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 467 cagtaaaacccaagagaacagggttttacttcctgaggggtaagatggtagactggagtc 408
Query: 57 tcagacagcctggtgtggaaccagctccatgaagagctgacactgtcatccatccacagt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcagacagcctggtgtggaaccagctccatgaagagctgacactgtcatccatccacagt 348
Query: 117 ggctccagcatggaataccagagttagactgtggtggggactggcagaacagagccatgc 176
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 347 ggctccagcatggaataccagagttagattgtggtggggactggcagaacagagccatgc 288
Query: 177 catggcaacttctctgattgtaaaaacttaggggagctgtttctcaggatgaaggtgcag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 catggcaacttctctgattgtaaaaacttaggggagctgtttctcaggatgaaggtgcag 228
Query: 237 agctctgaggccccacctaaaatgccaccctactcctacccctacccctcgccccatccc 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 agccctgaggccccacctaaaatgccaccctactcctacccctacccctcgccccatccc 168
Query: 297 caccctgagccctggagtgccacagggcttcaccctgagcagaagctgaggggcagaaca 356
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 caccccgagccctgcagtgccacagggcttcaccctgagcagaagctgaggggcagaaca 108
Query: 357 ggcctctggaaccac 371
|||||||||||||||
Sbjct: 107 ggcctctggaaccac 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 775
Length adjustment: 9
Effective length of query: 362
Effective length of database: 766
Effective search space: 277292
Effective search space used: 277292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
