Query= MSMg01no548_k22.b1 MSMg01no548_k22.b1 CHROMAT_FILE:
MSMg01no548_k22.b1 PHD_FILE: MSMg01no548_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:40 2005
(528 letters)
>mm_chr1_172714382_172715309
Length = 928
Score = 978 bits (506), Expect = 0.0
Identities = 517/524 (98%), Gaps = 6/524 (1%)
Strand = Plus / Minus
Query: 5 gaattcctttgctcatcttgttctcccaaataattaatgtactcaccagcctcatggtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gaattcctttgctcatcttgttctcccaaataattaatgtactcaccagcctcatggtgt 548
Query: 65 cttttgcctggcaggtgggctgctgtgaatagtttcattaaggctccaactgtctgggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cttttgcctggcaggtgggctgctgtgaatagtttcattaaggctccaactgtctgggct 488
Query: 125 caagagaaggaaggagctgttcttctgttgatagaattacgtttaaggttaaaggaaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caagagaaggaaggagctgttcttctgttgatagaattacgtttaaggttaaaggaaaag 428
Query: 185 taaaccttttagagtggacctcgttctctggaaggccccgacctgcgctgccgtgactgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taaaccttttagagtggacctcgttctctggaaggccccgacctgcgctgccgtgactgt 368
Query: 245 gtctctgagcttcctacagaagcatgttttaatcctagttgaggatatgccctcattgga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtctctgagcttcctacagaagcatgttttaatcctagttgaggatatgccctcattgga 308
Query: 305 ttgaacagtataacatagaataaaaacagcagatgtcaagccatgggtggaaatcattgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttgaacagtataacatagaataaaaacagcagatgtcaagccatgggtggaaatcattgt 248
Query: 365 taacaatgttttcctagggatgagaacaagtcactctctctctcacacacacacaaacac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 247 taacaatgttttcctagggatgagaacaagtcactctctctctcacacacacacacacac 188
Query: 425 acacacacacacacacacacacacacacacacacacacacacacacacagagacacagac 484
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 187 acacacacacacacacacacacacacacacacacacacacaca------gagacacagac 134
Query: 485 acacagatacacagacacacagacacacacacagatacacacac 528
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 acacagatacacagacacacagacacacacacagatacacacac 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 171
Number of extensions: 30
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_k22.g1 MSMg01no548_k22.g1 CHROMAT_FILE:
MSMg01no548_k22.g1 PHD_FILE: MSMg01no548_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:40 2005
(617 letters)
>mm_chr1_172511472_172512488
Length = 1017
Score = 1081 bits (559), Expect = 0.0
Identities = 591/617 (95%), Gaps = 24/617 (3%)
Strand = Plus / Plus
Query: 1 atacaaggtcacatagcatgcaagggacagagctagggttcaaagccaatcacagctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atacaaggtcacatagcatgcaagggacagagctagggttcaaagccaatcacagctcca 284
Query: 61 gctcctgaatctaagctaggcactcttgccaaccaaatttatatgacataaaatagcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gctcctgaatctaagctaggcactcttgccaaccaaatttatatgacataaaatagcaag 344
Query: 121 gtaagccaagcatggtggcacatgcctttaattccagcacttttgaggcagaggtaggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtaagccaagcatggtggcacatgcctttaattccagcacttttgaggcagaggtaggta 404
Query: 181 gtccactgagttcgaggccagcctgctctaggacagccagagccacacaaagaaccaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtccactgagttcgaggccagcctgctctaggacagccagagccacacaaagaaccaatg 464
Query: 241 tctcagaaaaccaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tctcagaaaaccaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 524
Query: 301 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 360
||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaaagaaagaaagaaagaaagaaagaaagaaagaaaga---------------------- 562
Query: 361 gagaaaaggaaaaagaaaaggaaaggtaagaaagaaaaagaaaagtcaaagtaaaaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 --gaaaaggaaaaagaaaaggaaaggtaagaaagaaaaagaaaagtcaaagtaaaaacat 620
Query: 421 acacagtgaatggaggtgggtgatgcaatcattaaagaaaacataaagaacaattagtaa 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agacagtgaatggaggtgggtgatgcaatcattaaagaaaacataaagaacaattagtaa 680
Query: 481 attataattacctattcctgacattaaacatctgttttaattcaaactctaattccccac 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attataattacctattcctgaaattaaacatctgttttaattcaaactctaattccccac 740
Query: 541 tgcatttattcagggaaaaaaaaaaaaaaacctcttactgagaaatggcaccatgaaaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcatttattcagggaaaaaaaaaaaaaaacctcttactgagaaatggcaccatgaaaac 800
Query: 601 tggtagtgagacaccat 617
|||||||||||||||||
Sbjct: 801 tggtagtgagacaccat 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 157
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
