Query= MSMg01no548_l07.b1 MSMg01no548_l07.b1 CHROMAT_FILE:
MSMg01no548_l07.b1 PHD_FILE: MSMg01no548_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:42 2005
(482 letters)
>mm_chr1_183452726_183453608
Length = 883
Score = 843 bits (436), Expect = 0.0
Identities = 466/476 (97%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 5 gaattctctcatgtgtcctccacttagacttccgcccttgtttaatcatcctgtctgtgt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcatgtgccctccacttagacttccgcccttgtttaatcatcctgtctgtgt 264
Query: 65 tcacatgaaccccacacacgcctgtgcacacggctacttcggaaacgcttgggaatgcgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacatgaaccccacacacgcctgtgcacacggctacttcggaaacgcttgggaatgcgt 324
Query: 125 attggccaccactgaacccaagtccacacctttccaaagcagaccacagggtgcacacac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attggccaccactgaacccaagtccacacctttccaaagcagaccacagggtgcacacac 384
Query: 185 accagccttgcttgccccttgacttcctgtaagcatcttcacctactgtgagagagatgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accagccttgcttgccccttgacttcctgtaagcatcttcacctactgtgagagagatgg 444
Query: 245 ctctcttatttcctgaaactcatgctgttacctggtcaggcttagaatctacctgaggaa 304
|| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 cttttttatttcctgcaactcatgctgttacctggtcaggcttagaatctacctgaggta 504
Query: 305 -tgctaacattgggaacaacttcagaagcgtggtcacagccgatagtccatgacagcggt 363
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 505 gtgctaacattgggaacaacttcagaagcgtggtctcagccgatagtccatgacagtggt 564
Query: 364 tctcaacccgcctaatgctgcgaccctttaactccaaccctaaaattacttccttgccac 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcaaccctcctaatgctgcgaccctttaactccaaccctaaaattacttccttgccac 624
Query: 424 ttgatacctgtaattttgctactgttacaaattgtaatataaatatctgatatgca 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ttgatacctgtaattttgctactgttacgaattgtaatataaatatctgatatgca 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_l07.g1 MSMg01no548_l07.g1 CHROMAT_FILE:
MSMg01no548_l07.g1 PHD_FILE: MSMg01no548_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:42 2005
(503 letters)
>mm_chr1_183649736_183650638
Length = 903
Score = 953 bits (493), Expect = 0.0
Identities = 500/503 (99%), Gaps = 2/503 (0%)
Strand = Plus / Minus
Query: 1 ttaaaaccaagttgctttcatttgtattagagacatacctgaggacattcataaaataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttaaaaccaagttgctttcatttgtattagagacatacctgaggacattcataaaataac 737
Query: 61 actgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacacacaagattccatttgagat 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ac--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacacacaagattccatttgagat 679
Query: 121 gttttccaacgtacctgtagatgattctggagttctgttgacagaatctggtagaaaagg 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gttttccaacatacctgtagatgattctggagttctgttgacagaatctggtagaaaagg 619
Query: 181 cttttctcgctttgatcagtcaaacgatcatgaaacacgcggctggcttcgtgaactagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttttctcgctttgatcagtcaaacgatcatgaaacacgcggctggcttcgtgaactagg 559
Query: 241 agcagagctgccatctctttggagttaattatgttcttatctgcctgcatcaatcctagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcagagctgccatctctttggagttaattatgttcttatctgcctgcatcaatcctagc 499
Query: 301 agaagctgagagaccaaaaggtaacacatgaccaacattcgctagtgtatgttacataat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agaagctgagagaccaaaaggtaacacatgaccaacattcgctagtgtatgttacataat 439
Query: 361 cacatagactttccaaggtaagattcattgatttctgtaagtgacaatctgaatgttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cacatagactttccaaggtaagattcattgatttctgtaagtgacaatctgaatgttttt 379
Query: 421 atgggacaggtgagttaaagccacagaaaatagctacaggacaacttgatagtgtctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgggacaggtgagttaaagccacagaaaatagctacaggacaacttgatagtgtctcag 319
Query: 481 gaacctctgagagaggcttacca 503
|||||||||||||||||||||||
Sbjct: 318 gaacctctgagagaggcttacca 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
