NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCG
CGGAATTCAGTAAGTGTTTGCAATTCATTTCTTTCAGAGTTCGATCATCG
TAGCCTGTCTGCTTGCTCACTGCAGGTGTTGAGGCCCGTCCTCCGCTGAG
GCTGATTGATGACACTGCCTTCTTTCTGTCCTGTTCATGGTGTATGCGCT
TACTGTGTTTTCTGCTTTTCTTTGATTTCCTTGTTTAAGATCCTCAACTG
TAGCGCTGAACCGCCCAGTAGCATTCCTATGGAAGGCCATCTTGTTTCAG
GTTAATGACTTGTTAAGTGAGCCTCATTTTGGCATCTGTCCTGGTGCTGT
TGGCGGTGAGATTAATGTCACTGCATCCTGAAGACACATAAGCCAATTCC
TTTATGACTGATGGGAATTTTGGAGCTTCACCTGATTTTTCCATTAAGAG
ACTGGTTCATTTTTTTTCCAAATTTGATATTTATGAGTATTGGCGATTGA
CTGTAATTCTTACAGTTTTCCAAAGACTGCCAGACACATTACTGTGGGCT
AGGTGACGTGACATACAGTTTTACTCTCTCAAAGTTGTAGAAGCCAGAGG
TCTAAAAGCAAGGAGTTGCCAGTCCATAGTCTCACTGAAGGCCGTTCTCC
CCTGCCCCGCTTTTAGGTTCTATTTGGTTTTGGCTTGAAGCAGCTTTAGT
TCAGTTTCTGCCTTTGTCA

AACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGGTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATTCCCCAACGGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGCTACCCAAGATATAAGATACAATTTGC
TAAACACATGAAACTCAAGAAG

Query= MSMg01no548_l14.b1 MSMg01no548_l14.b1 CHROMAT_FILE:
MSMg01no548_l14.b1 PHD_FILE: MSMg01no548_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:43 2005
         (618 letters)



>mm_chr1_141369064_141370081
          Length = 1018

 Score = 1075 bits (556), Expect = 0.0
 Identities = 598/612 (97%), Gaps = 1/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcagtaagtgtttgcaattcatttctttcagagttcgatcatcgtagcctgtctgc 67
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcagtaagtggctgaaattcatttctttcagagttcgatcatcgtagcctgtctgc 267

                                                                       
Query: 68  ttgctcactgcaggtgttgaggcccgtcctccgctgaggctgattgatgacactgccttc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgctcactgcaggtgttgaggcccgtcctccgctgaggctgattgatgacactgccttc 327

                                                                       
Query: 128 tttctgtcctgttcatggtgtatgcgcttactgtgttttctgcttttctttgatttcctt 187
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttctgtcatgttcatggtgtatgcgcttactgtgttttctgcttttctttgatttcctt 387

                                                                       
Query: 188 gtttaagatcctcaactgtagcgctgaaccgcccagtagcattcctatggaaggccatct 247
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 388 gtttaagatcctcaactgtagcgctgaaccgcccagtagcattcctaaggaaggccatct 447

                                                                       
Query: 248 tgtttcaggttaatgacttgttaagtgagcctcattttggcatctgtcctggtgctgttg 307
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 448 tgtttcaggttaatgacttgttaagtgagcttcattttggcatctgtcctggtgctgttg 507

                                                                       
Query: 308 gcggtgagattaatgtcactgcatcctgaagacacataagccaattcctttatgactgat 367
           || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 508 gccgtgagattaatgtcactgcatcctgaaaacacataagccaattcctttatgactgat 567

                                                                       
Query: 368 gggaattttggagcttcacctgatttttccattaagagactggttcatttttttt-ccaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 568 gggaattttggagcttcacctgatttttccattaagagactggttcatttttttttccaa 627

                                                                       
Query: 427 atttgatatttatgagtattggcgattgactgtaattcttacagttttccaaagactgcc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atttgatatttatgagtattggcgattgactgtaattcttacagttttccaaagactgcc 687

                                                                       
Query: 487 agacacattactgtgggctaggtgacgtgacatacagttttactctctcaaagttgtaga 546
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 688 agacacattactgtgggctaggtgacgcgacatacagttttactctctcaaagttgtaga 747

                                                                       
Query: 547 agccagaggtctaaaagcaaggagttgccagtccatagtctcactgaaggccgttctccc 606
           |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 agccagatttctaaaaacaaggagttgccagtccatagtctcactgaaggccgttctccc 807

                       
Query: 607 ctgccccgcttt 618
           ||||||| ||||
Sbjct: 808 ctgccccacttt 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)