BAC Information

Click to search

BAC

Clone NameMSMg01-548M09
Chromosome1 (Build37)
Map Location 131,145,036 - 131,397,924
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneUbxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548M09.T7 (MSMg01no548_m09.b1)MSMg01-548M09.TJ (MSMg01no548_m09.g1)
ACCAG613041AG613042
length781751
length of high quality
(start - end)
370 (46 - 415)350 (73 - 422)
definitionCHROMAT_FILE: MSMg01no548_m09.b1 PHD_FILE: MSMg01no548_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:47 2005CHROMAT_FILE: MSMg01no548_m09.g1 PHD_FILE: MSMg01no548_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,145,036 - 131,145,402)(131,397,575 - 131,397,924)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGCATTCTGTTCTCCTATTGTACCATCTGTTGGGGGTTGGGCA
AATAAAGTAAGAGAGAAGGTTTCCAACCTTGAAATGCAATAAAAACTGAA
GAAGTAGTTTGTTTTACTATCTTTCCCCATTTTTTAATATTGTGTACACC
ACTCTCCCAACGCAGATCTGGAAGACAGAACTTAAGCTGGTCAGCAAATC
TTTATCTTGAGGAGAAAAATAAAATATAGACATCTTGAATTATAGTCATA
TTCCAAAGAAAGCCCTCTTTACAAATGTTTTGAACTCAAAGATTGTTTAA
TCTTTGCTGACTGGTGGGAATGATTTTTAAAAGAGAGACAGAAATGCCTT
ATACTCTTCTACCCTCATGGCGATTAGAATTCACATTTATAACTACATTT
TTTGTTCTCTTTATAGAAGAAAATTTTTATTCACCTGTGAGAATAGTCAG
TGTAATATCAACCTTAACGGGTTCCCCCAAAAAATCTGCTACAAAGGATT
TCTGCCTTTCTTAGGAGTTCTGATTAGTGGTCCTATCACATATTCTTGGG
CATTGCAAGTTAATATTCCCCAGGGATAAATAAATTGAATACTTGCTAAC
TCAACTGATCTCTTAACCTTTGTTTTTGAAACCATCAAATATAAATGATA
ATATCTTCCACACTTTTAAAAAAATAAATTCATCCCCTTTTTCCCTGACA
AAACAAATATTATTTTTATGGCCGGGTGGAA
CTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGCTGCTGTGGGTTCAGAAGGATCTG
GATCTTGCATGGTCACTCTGCCCTGCTCTCTAGGTGATAACTTAGTCTCA
AGCTCCTTGTGGTAGCAGGATAACTACCAGAAGCTCCTGTGTGATGTTGT
CCTGGAACTGATGAATTTATTTCTGCTAACACCAACCAGCTTTAAAGGAC
AATGACACCAACTGGTCAGATCTAGTTAATGCTGTCTTTTGGTCCAGGTA
GGGGACCTGTGATGATTAATCTTCATTGATCACTGTCATCTTGACTGGAT
TAAGAAATGCTGGGAAATTAGTGAAGCACACCTCTAGATGTGTCTTCAAG
GGCATTTTAAGAGACAATTGCATCAGTAAGGCTCTGACCTACCAACGAAT
TAATTAGATCAGCTCTTTTATGGAATACCACAATATTATTGAGAGGTAGT
CAAGAATAGGGGCATGTCCTTGAATTTTGAAAGTGAGCAAGGAGGGATAT
TATGGGGAGAATGTGGAAAGAATAAAGGGAATGGGGAAATGGTATAATTT
TATTATAATCTAAAAATAAAAGGGACCAAAAACTTTTTATAGAAAGTAGC
TTCTTTAGGGATGATCTTTATCCCTTGTGGGCACCTGTTTTGTGTTGTGC
GTAGTGAAGCGTGGAGTTGTGTTTGTTGTTTCCTTTCCACCTTCTGTCTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_m09.b1 MSMg01no548_m09.b1 CHROMAT_FILE:
MSMg01no548_m09.b1 PHD_FILE: MSMg01no548_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:47 2005
         (370 letters)



>mm_chr1_131144833_131145602
          Length = 770

 Score =  702 bits (363), Expect = 0.0
 Identities = 366/367 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttgcattctgttctcctattgtaccatctgttgggggttgggcaaataaagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgcattctgttctcctattgtaccatctgttgggggttgggcaaataaagt 263

                                                                       
Query: 64  aagagagaaggtttccaaccttgaaatgcaataaaaactgaagaagtagtttgttttact 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 aagagagaaggtttccaaccttgaaatgtaataaaaactgaagaagtagtttgttttact 323

                                                                       
Query: 124 atctttccccattttttaatattgtgtacaccactctcccaacgcagatctggaagacag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atctttccccattttttaatattgtgtacaccactctcccaacgcagatctggaagacag 383

                                                                       
Query: 184 aacttaagctggtcagcaaatctttatcttgaggagaaaaataaaatatagacatcttga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacttaagctggtcagcaaatctttatcttgaggagaaaaataaaatatagacatcttga 443

                                                                       
Query: 244 attatagtcatattccaaagaaagccctctttacaaatgttttgaactcaaagattgttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attatagtcatattccaaagaaagccctctttacaaatgttttgaactcaaagattgttt 503

                                                                       
Query: 304 aatctttgctgactggtgggaatgatttttaaaagagagacagaaatgccttatactctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatctttgctgactggtgggaatgatttttaaaagagagacagaaatgccttatactctt 563

                  
Query: 364 ctaccct 370
           |||||||
Sbjct: 564 ctaccct 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no548_m09.g1 MSMg01no548_m09.g1 CHROMAT_FILE:
MSMg01no548_m09.g1 PHD_FILE: MSMg01no548_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:47 2005
         (350 letters)



>mm_chr1_131397490_131398239
          Length = 750

 Score =  661 bits (342), Expect = 0.0
 Identities = 348/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggctgctgtgggttcagaaggatctggatcttgcatggtcactctgccctgctctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgggctgctgtgggttcagaaggatctggatcttgcatggtcactctgccctgctctcta 376

                                                                       
Query: 61  ggtgataacttagtctcaagctccttgtggtagcaggataactaccagaagctcctgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtgataacttagtctcaagctccttgtggtagcaggataactaccagaagctcctgtgt 316

                                                                       
Query: 121 gatgttgtcctggaactgatgaatttatttctgctaacaccaaccagctttaaaggacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gatgttgtcctggaactgatgaatttatttctgctaacaccaaccagctttaaaggacaa 256

                                                                       
Query: 181 tgacaccaactggtcagatctagttaatgctgtcttttggtccaggtaggggacctgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgacaccaactggtcagatctagttaatgctgtcttttggtccaggtaggggacctgtga 196

                                                                       
Query: 241 tgattaatcttcattgatcactgtcatcttgactggattaagaaatgctgggaaattagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgattaatcttcattgatcactgtcatcttgactggattaagaaatgctgggaaattagt 136

                                                             
Query: 301 gaagcacacctctagatgtgtcttcaagggcattttaagagacaattgca 350
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 135 gaagcacacctctggatgtttcttcaagggcattttaagagacaattgca 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)