Query= MSMg01no548_p20.b1 MSMg01no548_p20.b1 CHROMAT_FILE:
MSMg01no548_p20.b1 PHD_FILE: MSMg01no548_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:04 2005
(498 letters)
>mm_chr1_76363994_76364891
Length = 898
Score = 901 bits (466), Expect = 0.0
Identities = 487/494 (98%)
Strand = Plus / Minus
Query: 5 gaattccaacagatgcagtcccttgctcaggactctattagacctcagcaccattccagt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattccaacagatgcaatcccttgctcaggactctattagacctcagcaccattccagt 639
Query: 65 gcttgacttcaggtctcactgataaaaaaggaaagttgtgagctagcaagggtcctttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 638 acttgacttcaggtctcactgataaaaaaggaaagttgtgagctagcaaggggcctttgt 579
Query: 125 ggcaagagctctgggtgctcattcaggcttctaagtccttctgttctctattgcactgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggcaagagctctgggtgctcattcaggcttctaagtccttctgttctctattgcactgct 519
Query: 185 ctctggtcactgtgatgataaaaggaaatcattttgagatgtcttccactgtagctcaac 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 518 ctctggtcactgtgatgataaaaggaaatcattttgagatgtcttccgctgtagctcaac 459
Query: 245 tggatccatgtctcagggggcagaacctgtataagctccactggcttaaagggcctcctc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 458 tggatccatgtctcagggggcagaacctgtataagctccactggcttaaaggacctcctc 399
Query: 305 tctggtggttgttctctcttagagaacttggatctataaatacagcaccacagggcttca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tctggtggttgttctctcttagagaacttggatctataaatacagcaccacagggcttca 339
Query: 365 tgtccttaagcttgaagctcttcctaactcagtcactcggacacagtaaacatattggag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtccttaagcttgaagctcttcctaactcagtcactcggacacagtaaacatattggag 279
Query: 425 gaataaccaagcctttgaaaagaagcatgtggaccccaagtgtgagcaaagaatatttac 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gaataactaagcctttgaaaagaagcatgtggaccccaagtgtgagcaaagaatatttac 219
Query: 485 tgtgccaatatctc 498
| ||||||||||||
Sbjct: 218 tctgccaatatctc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_p20.g1 MSMg01no548_p20.g1 CHROMAT_FILE:
MSMg01no548_p20.g1 PHD_FILE: MSMg01no548_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:04 2005
(559 letters)
>mm_chr1_76241114_76242076
Length = 963
Score = 456 bits (236), Expect = e-132
Identities = 260/274 (94%), Gaps = 13/274 (4%)
Strand = Plus / Plus
Query: 295 tttctcc-gagactttgacttttgaaagggcaagatttctggactacgggggaaaccc-- 351
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 494 tttctcctgagactttgacttttgaaagggcaagatttctggactacgggggaaa-ccct 552
Query: 352 ------tttttttggggggccatggtctgtctcctcaagaggcttgttaggctggggcac 405
|||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 553 tttttttttttttggg---ccatggtctgtctcctcaagaggcttgttaggctgaggcac 609
Query: 406 tgaggagcacccatccatcatatttagcttttgttctcatcctttgggtcttatcccttt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgaggagcacccatccatcatatttagcttttgttctcatcctttgggtcttatcccttt 669
Query: 466 cttacacttgggtccccatatacttacatcaagcttcttttctgcttcaatcacacacag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cttacacttgggtccccatatacttacatcaagcttcttttctgcttcaatcacacacag 729
Query: 526 tggaggaaatctgaatgagacacccttcttccat 559
||||||||||||||||||||||||||||||||||
Sbjct: 730 tggaggaaatctgaatgagacacccttcttccat 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 963
Length adjustment: 10
Effective length of query: 549
Effective length of database: 953
Effective search space: 523197
Effective search space used: 523197
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
