BAC Information

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BAC

Clone NameB6Ng01-002C19
Chromosome12 (Build37)10 (Build37)
Map Location 93,301,063 - 93,301,918104,054,358 - 104,054,755
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387
Downstream geneLOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002C19.bB6Ng01-002C19.g
ACCDH840279DH840280
length856800
definitionDH840279|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C19, 5' end.DH840280|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,301,063 - 93,301,918)(104,054,358 - 104,054,755)
sequence
gaattcttcctgaacatgtgggaaagtcgaggtcaaggcaaaaccaatga
gccattgcagtcttcactagtgaaatttcaacaagtagattaaaattaat
cagactaattgggccttttctgggagcaatggagaaaaatgaacatgtgt
agagactgaaaaagttaaaactactgctgaattttgtctaacctatgagt
tttaaaaagcaaaaggaaggtgattcccctcaagggctattcaacgcatt
taaatgtgagctcaccaaagcatggactaatgttttaacagctggagtgg
ttaagcatccttctgttttaatagttttaatagcctatgacaagagggca
aggttagacacccaaagagctcagcatcctcaagggcaacacctgaagtg
agtgagaatctgttctgatggaatgcagcagcagtttctgtagagcaagg
ctgtttaatagactgctctctgcatttaaattatagtagacttgcccttc
acttaaacttgaccagcagcccccacacagctctaagggatgatgctgca
gtgctgcgatacaggaaggaaaacagaccactgtcaccatgcacatacct
ccctcttagtgtatggaagcacagggatgctgcactcagacaggcaccat
ataaagcacactagactcttggccataaagtgtgacacagcttagggatc
atcacgtccattgagttaaaatagaaagcgatctggaaaacgaaagagtt
gcattcagttcctgtttcctgatctctttcccatgtaaactctgaggtct
tcaatgctcacttacctacagacttccaggtctcagtgtgtgtgtgtgtt
gtgtgg
gaattctttgtttagttctgagccccattttttttctgagccccattttt
taatggtgttatttgattttctggagtccaccttcttgatatatatatat
atatatatatatatacatatatatacatatatatatgtatatctatctat
caagatatatatatatatatatatatatatatatatatatatatatatat
atatatactggatattagtcccctatctgatttaggattggtaaagatcc
tttcccaatctgttggtggcctttttgtcttattgacagtgtcttttacc
ttaatgaagctttgcaattttatgaggtcccatttgtcgattctcgatct
tacagcacaagccattgctgttctattcaggaatttttcccctgtgccca
tatcttcaaggctttcccccactttcttccctataagtttcagtgtctct
ggttttatgtggagttccttgatccacttagatttgaccttagtacaagg
agataggaatggatcaattcgcattcttctacatgataaccgccagttga
gatagcaccttttgttgaaaatgctgtttgttttccactggatgatttta
gctcccttgtcgaagatcaagtgaccataggtgtgtgggttcatttctgg
gtcttcaattgcattccattgatctacctgcctgtgccagtaccaagcag
ttttatcataattgctctgtagtacagcttgaggtcagggatggtgattc
catcagaggttcttttattatttgagaatagtttttgctatcccaggttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93301063_93301918
seq2: B6Ng01-002C19.b_49_903 (reverse)

seq1  CACACACACACACACACACACTGAGACCTGGAAGTCTGTAGGTAAGTGAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACACA-ACACACACACACACTGAGACCTGGAAGTCTGTAGGTAAGTGAG  49

seq1  CATTGAAGACCTCAGAGTTTACATGGGAAAGAGATCAGGAAACAGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGACCTCAGAGTTTACATGGGAAAGAGATCAGGAAACAGGAACT  99

seq1  GAATGCAACTCTTTCGTTTTCCAGATCGCTTTCTATTTTAACTCAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAACTCTTTCGTTTTCCAGATCGCTTTCTATTTTAACTCAATGGA  149

seq1  CGTGATGATCCCTAAGCTGTGTCACACTTTATGGCCAAGAGTCTAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGATCCCTAAGCTGTGTCACACTTTATGGCCAAGAGTCTAGTGTG  199

seq1  CTTTATATGGTGCCTGTCTGAGTGCAGCATCCCTGTGCTTCCATACACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGGTGCCTGTCTGAGTGCAGCATCCCTGTGCTTCCATACACTA  249

seq1  AGAGGGAGGTATGTGCATGGTGACAGTGGTCTGTTTTCCTTCCTGTATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGTATGTGCATGGTGACAGTGGTCTGTTTTCCTTCCTGTATCG  299

seq1  CAGCACTGCAGCATCATCCCTTAGAGCTGTGTGGGGGCTGCTGGTCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGCAGCATCATCCCTTAGAGCTGTGTGGGGGCTGCTGGTCAAGT  349

seq1  TTAAGTGAAGGGCAAGTCTACTATAATTTAAATGCAGAGAGCAGTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAAGGGCAAGTCTACTATAATTTAAATGCAGAGAGCAGTCTATT  399

seq1  AAACAGCCTTGCTCTACAGAAACTGCTGCTGCATTCCATCAGAACAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCTTGCTCTACAGAAACTGCTGCTGCATTCCATCAGAACAGATT  449

seq1  CTCACTCACTTCAGGTGTTGCCCTTGAGGATGCTGAGCTCTTTGGGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACTTCAGGTGTTGCCCTTGAGGATGCTGAGCTCTTTGGGTGTC  499

seq1  TAACCTTGCCCTCTTGTCATAGGCTATTAAAACTATTAAAACAGAAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGCCCTCTTGTCATAGGCTATTAAAACTATTAAAACAGAAGGAT  549

seq1  GCTTAACCACTCCAGCTGTTAAAACATTAGTCCATGCTTTGGTGAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACCACTCCAGCTGTTAAAACATTAGTCCATGCTTTGGTGAGCTCA  599

seq1  CATTTAAATGCGTTGAATAGCCCTTGAGGGGAATCACCTTCCTTTTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAATGCGTTGAATAGCCCTTGAGGGGAATCACCTTCCTTTTGCTT  649

seq1  TTTAAAACTCATAGGTTAGACAAAATTCAGCAGTAGTTTTAACTTTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTCATAGGTTAGACAAAATTCAGCAGTAGTTTTAACTTTTTCA  699

seq1  GTCTCTACACATGTTCATTTTTCTCCATTGCTCCCAGAAAAGGCCCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACACATGTTCATTTTTCTCCATTGCTCCCAGAAAAGGCCCAATT  749

seq1  AGTCTGATTAATTTTAATCTACTTGTTGAAATTTCACTAGTGAAGACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATTAATTTTAATCTACTTGTTGAAATTTCACTAGTGAAGACTGC  799

seq1  AATGGCTCATTGGTTTTGCCTTGACCTCGACTTTCCCACATGTTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCATTGGTTTTGCCTTGACCTCGACTTTCCCACATGTTCAGGAA  849

seq1  GAATTC  856
      ||||||
seq2  GAATTC  855

seq1: chr10_104054358_104054755
seq2: B6Ng01-002C19.g_66_585

seq1  GAATTCTTTGTTCAG------------------TTCTGAGCCCCATTTTT  32
      |||||||||||| ||                  |||||||||||||||||
seq2  GAATTCTTTGTTTAGTTCTGAGCCCCATTTTTTTTCTGAGCCCCATTTTT  50

seq1  TAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT  82
      |||| | |||||||||||||||| |||||||||||||||  | | |||||
seq2  TAATGGTGTTATTTGATTTTCTGGAGTCCACCTTCTTGATATATATATAT  100

seq1  ATGT----------------------------------------------  86
      || |                                              
seq2  ATATATATATATATACATATATATACATATATATATGTATATCTATCTAT  150

seq1  --------------------------------------------------  86
                                                        
seq2  CAAGATATATATATATATATATATATATATATATATATATATATATATAT  200

seq1  --------TGGATATTAGTCCCCTATCTGAATTAGGATAGGTAAAGATCC  128
              |||||||||||||||||||||| ||||||| |||||||||||
seq2  ATATATACTGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCC  250

seq1  TTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCC  178
      |||| |||||||||||||| ||||||||||||||||| ||||||||| ||
seq2  TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTACC  300

seq1  TTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAACTCTCTATCT  228
      ||   |||||||||||||||||||||||||||||| || | |||| ||||
seq2  TTAATGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGATCT  350

seq1  TACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCA  278
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCA  400

seq1  TATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTCAGTGTCTCT  328
      ||||||| ||||||| ||| ||||| | | ||||||||||||||||||||
seq2  TATCTTCAAGGCTTTCCCCCACTTTCTTCCCTATAAGTTTCAGTGTCTCT  450

seq1  GGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTTACCTTAGTACAAGG  378
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  GGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGG  500

seq1  AGATAGTAATTGATCAATTC  398
      |||||| ||| |||||||||
seq2  AGATAGGAATGGATCAATTC  520