BAC Information

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BAC

Clone NameB6Ng01-004B17
Chromosome10 (Build37)
Map Location 106,078,305 - 106,211,113
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B17.bB6Ng01-004B17.g
ACCDH841608DH841609
length6431,188
definitionDH841608|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B17, 5' end.DH841609|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,078,305 - 106,078,933)(106,209,914 - 106,211,113)
sequence
gaattcttatcatattcataaaggctgttttaagttgttttcttttgttt
ttgttttgttttgtttttatactcatagcctgctttggtagggttgctgt
gctctagtggagacatataactacatatacatgtacatatgttttgtctt
tgttatgtgggtggatgctttcttccttgtattttgttgtcctctctggt
tcatagaaaagtgttgtggctgtttgtcatctggttggtaattcttctgg
gatactgacaggtgtggccaagatgggttccaggtaaaatgtggttctgg
gtatggagaattgagagagaggacctggaatggaccataggaggtgaggc
cgagggtttccataggagggagaagagacatgtgttccaccaggatctgc
ttgtgccttgggaacagacacagaaagtgagctgaggcttaagcaggtgg
tctacacaaacctgagaatgagtctgtgggactggacttggaggaatgga
gagagaggtgaagatatatagttaccctgtgtgatttgttgccaggagtg
gcctgtaggatatcaggatgtgcctgaagagttgggagccagcataaacc
agggtaaggagggatggatggtgggagtgtaattcaatgcgca
gaattctttattttcttaagaaaaagttacttgaattttggtaaattaag
ttactagaatgagcatgcaaggaataaaatgcatgttaaaaacagttctg
catgcagctgaatggcctgggtattttgatgtttaatgcagtcatgtgga
aaagctgtttaaaataaacatgcttgcttctgtagtcactgaaaattaac
ctgccaatggaagctttagaggtacttctgaataatccattttgtgtaat
tctattaaataattaaatgactatatgggtttctggtaatggaaaacaca
cttttaggattcaatgtacttttctttggacatgctttgtattatacatc
ttgtgtgcttttctgattttaagctacaataaattttctatgaaagaaac
aaagaagttttttgtacctattatatctacataatctagagtcactattt
aaagataacaacctagaaaatggattgtgctaacaatgcagtctccctag
atagaactgctcagagagagtttgaattcagcaaatttcaattatgtgtc
tgtgtatttataatagtttgtcttttctagttgtgtttcccagaagtaaa
aggttcaaaaatgcagattttcaattcagtatgttgtattcggtcattgc
cctgaaaaattataatgattctttactgttacaaatcgagaaaatatagc
aattctttttaatcaacactgtaatccattaccaagctcatcacatttta
taaacttctcagttaatctgcagaattaaacacaagcttatttcttgcct
ccgtaaaaacactgtttggcttattattatccacaggataaagtactgtc
actagaaactgccaactcaagtagtgctttctctggagcctgaatcccat
ttcttccccaccctgcttccagattcagctgtgttaaatacattccattg
atagtcccagcatatatctacagaattttgtctccaattgtgacttcact
gcattaaatactgccatcataattaaagtgcagcactttcttctttcact
acttgatctcccatttagcaacaacaacactagtatacaaaacggtagcc
tttaaagtttgccaattaaagaaacgagagcatataaactgtggatttag
tgctcttttagattctggctgacctgagtctatcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106078305_106078933
seq2: B6Ng01-004B17.b_43_671

seq1  GAATTCTTATCATATTCATAAAGGCTGTTTTAAGTTGTTTTCTTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCATATTCATAAAGGCTGTTTTAAGTTGTTTTCTTTTGTTT  50

seq1  TTGTTTTGTTTTGTTTTTATACTCATAGCCTGCTTTGGTAGGGTTGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTTATACTCATAGCCTGCTTTGGTAGGGTTGCTGT  100

seq1  GCTCTAGTGGAGACATATAACTACATATACATGTACATATGTTTTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTGGAGACATATAACTACATATACATGTACATATGTTTTGTCTT  150

seq1  TGTTATGTGGGTGGATGCTTTCTTCCTTGTATTTTGTTGTCCTCTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTGGGTGGATGCTTTCTTCCTTGTATTTTGTTGTCCTCTCTGGT  200

seq1  TCATAGAAAAGTGTTGTGGCTGTTTGTCATCTGGTTGGTAATTCTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAAAGTGTTGTGGCTGTTTGTCATCTGGTTGGTAATTCTTCTGG  250

seq1  GATACTGACAGGTGTGGCCAAGATGGGTTCCAGGTAAAATGTGGTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGACAGGTGTGGCCAAGATGGGTTCCAGGTAAAATGTGGTTCTGG  300

seq1  GTATGGAGAATTGAGAGAGAGGACCTGGAATGGACCATAGGAGGTGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGAATTGAGAGAGAGGACCTGGAATGGACCATAGGAGGTGAGGC  350

seq1  CGAGGGTTTCCATAGGAGGGAGAAGAGACATGTGTTCCACCAGGATCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGTTTCCATAGGAGGGAGAAGAGACATGTGTTCCACCAGGATCTGC  400

seq1  TTGTGCCTTGGGAACAGACACAGAAAGTGAGCTGAGGCTTAAGCAGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTTGGGAACAGACACAGAAAGTGAGCTGAGGCTTAAGCAGGTGG  450

seq1  TCTACACAAACCTGAGAATGAGTCTGTGGGACTGGACTTGGAGGAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAAACCTGAGAATGAGTCTGTGGGACTGGACTTGGAGGAATGGA  500

seq1  GAGAGAGGTGAAGATATATAGTTACCCTGTGTGATTTGTTGCCAGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGTGAAGATATATAGTTACCCTGTGTGATTTGTTGCCAGGAGTG  550

seq1  GCCTGTAGGATATCAGGATGTGCCTGAAGAGTTGGGAGCCAGCATAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGGATATCAGGATGTGCCTGAAGAGTTGGGAGCCAGCATAAACC  600

seq1  AGGGTAAGGAGGGATGGATGGTGGGAGTG  629
      |||||||||||||||||||||||||||||
seq2  AGGGTAAGGAGGGATGGATGGTGGGAGTG  629

seq1: chr10_106209914_106211113
seq2: B6Ng01-004B17.g_64_1251 (reverse)

seq1  GGTTGATAGAACTCAGGTCCAGCAGAGATCTTAAAAGAGCACTAAAATCA  50
      ||||||||| |||||||||   |||| ||| |||||||||||||||  ||
seq2  GGTTGATAG-ACTCAGGTCAGCCAGA-ATC-TAAAAGAGCACTAAATCCA  47

seq1  CATTTTATATGCCTCT-GTTTCTTTAATTGCAAAACCTTAAAGCTAACCG  99
      || |||||||| |||| |||||||||||||  |||| ||||||   ||||
seq2  CAGTTTATATG-CTCTCGTTTCTTTAATTGGCAAACTTTAAAGGCTACCG  96

seq1  TTTTTGTATACTAGTTGTTGTTGTTGCTAAATGGGAGATCAAGTAGTGTA  149
       ||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  -TTTTGTATACTAG-TGTTGTTGTTGCTAAATGGGAGATCAAGTAGTG-A  143

seq1  AAGGAGAAAAGTGCCTTGCACTTTAATTATGATGGCAGTATTTAATGCAG  199
      ||| || |||||||  ||||||||||||||||||||||||||||||||||
seq2  AAGAAG-AAAGTGC--TGCACTTTAATTATGATGGCAGTATTTAATGCAG  190

seq1  TGAAGTCACAATTTGGGAGACAAAATTCTGTAGATATATGCTGGGACTAT  249
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TGAAGTCACAATT--GGAGACAAAATTCTGTAGATATATGCTGGGACTAT  238

seq1  CAATGGAAATGTATTTAACACAGCTGAATCTGGAAGCAGGGTGGGGAAGA  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGG-AATGTATTTAACACAGCTGAATCTGGAAGCAGGGTGGGGAAGA  287

seq1  AATGGGATTCAGGCTCCAGAGAAAGCACTACTTGAGTTGGCAGTTTCTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATTCAGGCTCCAGAGAAAGCACTACTTGAGTTGGCAGTTTCTAG  337

seq1  TGACAGTACTTTATCCTGTGGATAATAATAAGCCAAACAGTGTTTTTACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTACTTTATCCTGTGGATAATAATAAGCCAAACAGTGTTTTTACG  387

seq1  GAGGCAAGAAATAAGCTTGTGTTTAATTCTGCAGATTAACTGAGAAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGAAATAAGCTTGTGTTTAATTCTGCAGATTAACTGAGAAGTTT  437

seq1  ATAAAATGTGATGAGCTTGGTAATGGATTACAGTGTTGATTAAAAAGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTGATGAGCTTGGTAATGGATTACAGTGTTGATTAAAAAGAAT  487

seq1  TGCTATATTTTCTCGATTTGTAACAGTAAAGAATCATTATAATTTTTCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATTTTCTCGATTTGTAACAGTAAAGAATCATTATAATTTTTCAG  537

seq1  GGCAATGACCGAATACAACATACTGAATTGAAAATCTGCATTTTTGAACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGACCGAATACAACATACTGAATTGAAAATCTGCATTTTTGAACC  587

seq1  TTTTACTTCTGGGAAACACAACTAGAAAAGACAAACTATTATAAATACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCTGGGAAACACAACTAGAAAAGACAAACTATTATAAATACAC  637

seq1  AGACACATAATTGAAATTTGCTGAATTCAAACTCTCTCTGAGCAGTTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATAATTGAAATTTGCTGAATTCAAACTCTCTCTGAGCAGTTCTA  687

seq1  TCTAGGGAGACTGCATTGTTAGCACAATCCATTTTCTAGGTTGTTATCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGAGACTGCATTGTTAGCACAATCCATTTTCTAGGTTGTTATCTT  737

seq1  TAAATAGTGACTCTAGATTATGTAGATATAATAGGTACAAAAAACTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTGACTCTAGATTATGTAGATATAATAGGTACAAAAAACTTCTT  787

seq1  TGTTTCTTTCATAGAAAATTTATTGTAGCTTAAAATCAGAAAAGCACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTCATAGAAAATTTATTGTAGCTTAAAATCAGAAAAGCACACA  837

seq1  AGATGTATAATACAAAGCATGTCCAAAGAAAAGTACATTGAATCCTAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATAATACAAAGCATGTCCAAAGAAAAGTACATTGAATCCTAAAA  887

seq1  GTGTGTTTTCCATTACCAGAAACCCATATAGTCATTTAATTATTTAATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTCCATTACCAGAAACCCATATAGTCATTTAATTATTTAATAG  937

seq1  AATTACACAAAATGGATTATTCAGAAGTACCTCTAAAGCTTCCATTGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACAAAATGGATTATTCAGAAGTACCTCTAAAGCTTCCATTGGCA  987

seq1  GGTTAATTTTCAGTGACTACAGAAGCAAGCATGTTTATTTTAAACAGCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTTTCAGTGACTACAGAAGCAAGCATGTTTATTTTAAACAGCTT  1037

seq1  TTCCACATGACTGCATTAAACATCAAAATACCCAGGCCATTCAGCTGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGACTGCATTAAACATCAAAATACCCAGGCCATTCAGCTGCAT  1087

seq1  GCAGAACTGTTTTTAACATGCATTTTATTCCTTGCATGCTCATTCTAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTGTTTTTAACATGCATTTTATTCCTTGCATGCTCATTCTAGTA  1137

seq1  ACTTAATTTACCAAAATTCAAGTAACTTTTTCTTAAGAAAATAAAGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTACCAAAATTCAAGTAACTTTTTCTTAAGAAAATAAAGAATT  1187

seq1  C  1200
      |
seq2  C  1188