BAC Information

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BAC

Clone NameB6Ng01-004B22
Chromosome10 (Build37)
Map Location 29,798,534 - 29,978,435
singlet/doubletdoublet
Overlap geneLOC667696, LOC100040542, 2610036L11Rik
Upstream gene6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232
Downstream geneLOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B22.bB6Ng01-004B22.g
ACCDH841617DH841618
length1,1011,168
definitionDH841617|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B22, 5' end.DH841618|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,798,534 - 29,799,646)(29,977,241 - 29,978,435)
sequence
gaattcttttgggtcttctctagttctgctctttgccactctcctccaat
tacatgggcctcttcttgctttttcattttttttttctgagaatgtaaac
tcaggtgtgctcttattaatgtctacatttgtaatataagcttccagaaa
attccagggcttttcttcatattgtacggagacagaaggacacctcctct
gattaacctgagcagaaagcattcaggcagaatcagtgctctttacccca
ctgccatgattgcttttcctttatagtatgtacgtccactgcacatgtct
ggtgcctttttattgtctagtctcactaccaacaatccaaattaagagaa
gaaattctgtcagtcttgttcatggtataaaatatgagttatccaaatat
attgctatactattgttcttgcgattcttctactttttaaagcaagtatc
ctttattatgaagattactctacccaggggttcaataaaactacttttat
tttaaattaataaaaacatggtccattaggtgttttgtttatcttgattt
tatttcatgtaaagaatatttctaacaactgtgcaaatacaatgtgagag
tagagaacataccctgttatggccatagccaaagatgggtccaccttcat
ttgtattactagtactacagtcaaaaagaaaaagttatcctgttttaata
tttcttatttgattttaatacttatcatttgcttttctgagtatcatgag
gctttttctaaatttaggcatttgataatttgcatttttaattgaaaagt
gtgagtttgtgcattcctttccagatatagtacatgtcagcaatgcctta
ataacaaggaagtgaaatgactggggagttatcagctgtgctcttgaata
cagaaaatgctaagacatataattagtcagctcccaacacatttttctct
atcttgtgaacatggatttgcatgtaaagcacggatgtgtgatacctctc
tctgatatgactgcatcccctatgggcacatcaggatattagaatcacta
tttttagatgacattccctcaccagtctagatgtagaaagtgttctctaa
a
gaattcccaagcagaagacagtaatgacattttacaaagcaatttggatg
aaatagtagggatagatagaaagaaaatgtattgtgatttttttttttga
gtaaatgaaagatactttatttcctaattgattagttgggaaaacaaatg
aaggtgtcaatgagtacaattgagaagtttaattttatttttgtaattag
aataaaaggaggcaataattagaggggcacctaaaaatccccccaaaatc
aagcaaaactgcaataaaaagggaccatgtctgtggagtctgtgtagagc
aaattccacttcaagcttgcctttgtcttcctgggattgagacgtacatt
ttattactttttaaatgttttctatgaattttaaatgtgaataatgtgtg
catatgtgtgtgtttccatgtgtgaatgtgtgcaagcactcctgtgagcc
cacacaaagttacatatttcacatgggaaatgtgaagataatcttgcttg
atcatttgtacagcttgtcactgctcagtggtgatgaataggcgagccct
aactaaactccaatcctctttgctttcttcttatacaaacaaaatctgtc
tgtcatgagctgaactgtagagtttacaaatacgttgcaacttctgtgct
gcctgctgctaacactgcaatcactccagatacaacatgtttttcctttt
taaaattaggcttttgacagcaattccttcctccgtgatttgatttcttt
atttgaaaatttagcctcattttaggagcaattggaaaactcaaccaatt
aaaatttacagatcataaagttgtattcagtgttgaggctaattctcctg
tatggtattgaatgccagagattacttttccagtgggagtgaagctcaga
acacactcattttgttactataagttatcaccaactagaatttgactgag
attccagtcatcatcttcagtacatattagatggtattacatagataatg
actcgtatttcatgatagatgataaatgaaatagatatgtttggacaact
gagtgacattgccaattagctagattgatttcatggccaagagcttcact
gggtgtgttgttctgagcccaagagttaaaccattacgtttggaaatgct
aagagtattacctagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29798534_29799646
seq2: B6Ng01-004B22.b_46_1146

seq1  GAATTCTTTTGGGTCTTCTCTAGTTCTGCTCTTTGCCACTCTCCTCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGGTCTTCTCTAGTTCTGCTCTTTGCCACTCTCCTCCAAT  50

seq1  TACATGGGCCTCTTCTTGCTTTTTCATTTTTTTTTTCTGAGAATGTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGCCTCTTCTTGCTTTTTCATTTTTTTTTTCTGAGAATGTAAAC  100

seq1  TCAGGTGTGCTCTTATTAATGTCTACATTTGTAATATAAGCTTCCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGCTCTTATTAATGTCTACATTTGTAATATAAGCTTCCAGAAA  150

seq1  ATTCCAGGGCTTTTCTTCATATTGTACGGAGACAGAAGGACACCTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGGCTTTTCTTCATATTGTACGGAGACAGAAGGACACCTCCTCT  200

seq1  GATTAACCTGAGCAGAAAGCATTCAGGCAGAATCAGTGCTCTTTACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACCTGAGCAGAAAGCATTCAGGCAGAATCAGTGCTCTTTACCCCA  250

seq1  CTGCCATGATTGCTTTTCCTTTATAGTATGTACGTCCACTGCACATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGATTGCTTTTCCTTTATAGTATGTACGTCCACTGCACATGTCT  300

seq1  GGTGCCTTTTTATTGTCTAGTCTCACTACCAACAATCCAAATTAAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTTTTTATTGTCTAGTCTCACTACCAACAATCCAAATTAAGAGAA  350

seq1  GAAATTCTGTCAGTCTTGTTCATGGTATAAAATATGAGTTATCCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTGTCAGTCTTGTTCATGGTATAAAATATGAGTTATCCAAATAT  400

seq1  ATTGCTATACTATTGTTCTTGCGATTCTTCTACTTTTTAAAGCAAGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATACTATTGTTCTTGCGATTCTTCTACTTTTTAAAGCAAGTATC  450

seq1  CTTTATTATGAAGATTACTCTACCCAGGGGTTCAATAAAACTACTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATGAAGATTACTCTACCCAGGGGTTCAATAAAACTACTTTTAT  500

seq1  TTTAAATTAATAAAAACATGGTCCATTAGGTGTTTTGTTTATCTTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTAATAAAAACATGGTCCATTAGGTGTTTTGTTTATCTTGATTT  550

seq1  TATTTCATGTAAAGAATATTTCTAACAACTGTGCAAATACAATGTGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATGTAAAGAATATTTCTAACAACTGTGCAAATACAATGTGAGAG  600

seq1  TAGAGAACATACCCTGTTATGGCCATAGCCAAAGATGGGTCCACCTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAACATACCCTGTTATGGCCATAGCCAAAGATGGGTCCACCTTCAT  650

seq1  TTGTATTACTAGTACTACAGTCAAAAAGAAAAAGTTATCCTGTTTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTACTAGTACTACAGTCAAAAAGAAAAAGTTATCCTGTTTTAATA  700

seq1  TTTCTTATTTGATTTTAATACTTATCATTTGCTTTTCTGAGTATCATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTTGATTTTAATACTTATCATTTGCTTTTCTGAGTATCATGAG  750

seq1  GCTTTTTCTAAATTTAGGCATTTGATAATTTGCATTTTTAATTGAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTAAATTTAGGCATTTGATAATTTGCATTTTTAATTGAAAAGT  800

seq1  GTGAGTTTGTGCATTCCTTTCCAGATATAGTACATGTCAGCAATGCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTGTGCATTCCTTTCCAGATATAGTACATGTCAGCAATGCCTTA  850

seq1  ATAACAAGGAAGTGAAATGACTGGGGAGTTATCAGCTGTGCTCTTGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGGAAGTGAAATGACTGGGGAGTTATCAGCTGTGCTCTTGAATA  900

seq1  CAGAAAATGCTAAGAACATATAATTAGTCAGCTCCCAACACA-TTTTCTC  949
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  CAGAAAATGCTAAG-ACATATAATTAGTCAGCTCCCAACACATTTTTCTC  949

seq1  TATCTTGTGAACATGGATTTTGCATGGTAAAGCACGGATGTGTTGATAAC  999
      ||||||||||||||||| ||||||| |||||||||||||||| |||| ||
seq2  TATCTTGTGAACATGGA-TTTGCAT-GTAAAGCACGGATGTG-TGAT-AC  995

seq1  CTCTCTCCTGAATATGAACTGCATCCCCTATGGGCCACATCAGGATAATA  1049
      |||||| ||| ||||| ||||||||||||||||| ||||||||||| || 
seq2  CTCTCT-CTG-ATATG-ACTGCATCCCCTATGGG-CACATCAGGAT-ATT  1040

seq1  AGAATCACTATTTTAAGAATGACA-TCCCTCACCAGTTCTAGATTGTAGA  1098
      |||||||||||||| || |||||| ||||||||||| |||||| ||||||
seq2  AGAATCACTATTTTTAG-ATGACATTCCCTCACCAG-TCTAGA-TGTAGA  1087

seq1  AAGTTGTCCTCTAAA  1113
      ||| ||| |||||||
seq2  AAG-TGTTCTCTAAA  1101

seq1: chr10_29977241_29978435
seq2: B6Ng01-004B22.g_67_1234 (reverse)

seq1  CTTCTTAGGTATATACTCTTAAGCATTTCTCCAAAACGTAAATGTGTTTT  50
      |||| |||||| |||||||| |||||||   | |||||| |||| |||| 
seq2  CTTC-TAGGTA-ATACTCTT-AGCATTT---CCAAACGT-AATG-GTTTA  42

seq1  ACTCTTTAGAGCTCAGAACAACACAACCAGTGAAAGCTCTGGGCATTGAA  100
      ||||||  | ||||||||||||||| |||||| ||||||| |||  ||||
seq2  ACTCTT--GGGCTCAGAACAACACACCCAGTG-AAGCTCTTGGCCATGAA  89

seq1  CTCATTTCTAAGCTAATTGGCCATTGTTCACTCAGTTGTCAAAACATTAT  150
       |||  ||| ||||||||||| ||   ||||||||||||| ||||| |||
seq2  ATCA-ATCT-AGCTAATTGGCAAT--GTCACTCAGTTGTCCAAACA-TAT  134

seq1  CTATTTCATTTTAATCATCTTATTCATTGAAATAACGAGTCATTATCTAT  200
      |||||||||||  |||||||   ||| |||||| ||||||||||||||| 
seq2  CTATTTCATTT--ATCATCT--ATCA-TGAAAT-ACGAGTCATTATCTA-  177

seq1  TGTAATACCATTCTAATATGTACTGAGGATGATGACTGGAATTCTCAGTC  250
      |||||||||| ||||||||||||||| |||||||||||||| ||||||||
seq2  TGTAATACCA-TCTAATATGTACTGAAGATGATGACTGGAA-TCTCAGTC  225

seq1  AAATTTCTTAGTTGGTGATAACTTATAGTAACAAAATGAGTGTGTTCTGA  300
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATT--CTAGTTGGTGATAACTTATAGTAACAAAATGAGTGTGTTCTGA  273

seq1  GCTTCACTCCCACTGGAAAAGTAATCTCTGGCATTCAATACCATACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTCCCACTGGAAAAGTAATCTCTGGCATTCAATACCATACAGGA  323

seq1  GAATTAGCCTCAACACTGAATACAACTTTATGATCTGTAAATTTTAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGCCTCAACACTGAATACAACTTTATGATCTGTAAATTTTAATTG  373

seq1  GTTGAGTTTTCCAATTGCTCCTAAAATGAGGCTAAATTTTCAAATAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTTTTCCAATTGCTCCTAAAATGAGGCTAAATTTTCAAATAAAGA  423

seq1  AATCAAATCACGGAGGAAGGAATTGCTGTCAAAAGCCTAATTTTAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATCACGGAGGAAGGAATTGCTGTCAAAAGCCTAATTTTAAAAAG  473

seq1  GAAAAACATGTTGTATCTGGAGTGATTGCAGTGTTAGCAGCAGGCAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATGTTGTATCTGGAGTGATTGCAGTGTTAGCAGCAGGCAGCAC  523

seq1  AGAAGTTGCAACGTATTTGTAAACTCTACAGTTCAGCTCATGACAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGCAACGTATTTGTAAACTCTACAGTTCAGCTCATGACAGACAG  573

seq1  ATTTTGTTTGTATAAGAAGAAAGCAAAGAGGATTGGAGTTTAGTTAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTGTATAAGAAGAAAGCAAAGAGGATTGGAGTTTAGTTAGGGC  623

seq1  TCGCCTATTCATCACCACTGAGCAGTGACAAGCTGTACAAATGATCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTATTCATCACCACTGAGCAGTGACAAGCTGTACAAATGATCAAGC  673

seq1  AAGATTATCTTCACATTTCCCATGTGAAATATGTAACTTTGTGTGGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATCTTCACATTTCCCATGTGAAATATGTAACTTTGTGTGGGCTC  723

seq1  ACAGGAGTGCTTGCACACATTCACACATGGAAACACACACATATGCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGCTTGCACACATTCACACATGGAAACACACACATATGCACAC  773

seq1  ATTATTCACATTTAAAATTCATAGAAAACATTTAAAAAGTAATAAAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCACATTTAAAATTCATAGAAAACATTTAAAAAGTAATAAAATGT  823

seq1  ACGTCTCAATCCCAGGAAGACAAAGGCAAGCTTGAAGTGGAATTTGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCAATCCCAGGAAGACAAAGGCAAGCTTGAAGTGGAATTTGCTCT  873

seq1  ACACAGACTCCACAGACATGGTCCCTTTTTATTGCAGTTTTGCTTGATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTCCACAGACATGGTCCCTTTTTATTGCAGTTTTGCTTGATTT  923

seq1  TGGGGGGATTTTTAGGTGCCCCTCTAATTATTGCCTCCTTTTATTCTAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGATTTTTAGGTGCCCCTCTAATTATTGCCTCCTTTTATTCTAAT  973

seq1  TACAAAAATAAAATTAAACTTCTCAATTGTACTCATTGACACCTTCATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAATAAAATTAAACTTCTCAATTGTACTCATTGACACCTTCATTT  1023

seq1  GTTTTCCCAACTAATCAATTAGGAAATAAAGTATCTTTCATTTACTCAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCAACTAATCAATTAGGAAATAAAGTATCTTTCATTTACTCAAA  1073

seq1  AAAAAAAATCACAATACATTTTCTTTCTATCTATCCCTACTATTTCATCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCACAATACATTTTCTTTCTATCTATCCCTACTATTTCATCC  1123

seq1  AAATTGCTTTGTAAAATGTCATTACTGTCTTCTGCTTGGGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTTTGTAAAATGTCATTACTGTCTTCTGCTTGGGAATTC  1168