BAC Information

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BAC

Clone NameB6Ng01-004H04
Chromosome10 (Build37)
Map Location 54,570,539 - 54,571,619
singlet/doubletsinglet
Overlap genenone
Upstream geneMan1a, LOC100041898
Downstream geneLOC382460, LOC100041927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H04.bB6Ng01-004H04.g
ACCDH841855DH841856
length1,1381,075
definitionDH841855|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H04, 5' end.DH841856|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaacccgataaacagcttcggtgaagtagctggataaaaaat
aaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctg
agaaagaaattagggaaacaacacccttctcaatagtcacaaataatata
aaatatcttggcgtgactctaactaaggaggtgaaagatctgtatgataa
aaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatgga
aagatctcccatgctcatggattggcaggatcaacattgtaaaaatggct
atcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattcc
aactcaattcttcaacaaattagaaggagcaatttgcaaattcatctgga
ataacaaaaaacctaggattgcaaaaagtcttctcaaggataaaagaacc
tctggtggaatcaccatgcctgacctaaagctttactacagagcaattgt
gataaaaactgcatggtgctggtatagagacagacaagtagaccaatgga
atagaattgaacacccagaaattaacccacacacctatggtcacttgatc
tttgacaagggagctaaaaccatccagtggaagaaagacagcattttcaa
caattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcg
atccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaa
cttcacataaaaccagagacactgaaacttatagaggagaaagtggggaa
aagcctcgaagatatgggcacaggggaaaaattcctgaacagaacagcaa
tggcttgtgctgtagatttagaattgacaaatgggacctaatgaaactca
aagtttctgcagcaaagacacgtcatagacaaaaagacacacgatggaaa
gatctactatctaatcaagggactatatcacatataagactcagaggtga
ctcgaaatcgatacccataaaatgggcccgaactacaagatccacttgag
atacgatgcgaagcttgaaagttcagtcttatctcgatgcatcagacctg
gaatctccacactagctgaatacaaattcgaccatatc
gaattcattctcattttgtatagattatttgtatgccttcctctattctc
tccatttgtattattcacctttacaactcaattttagaaactattgacag
tgttttattagacaaacagtttgaaatgctttctatgatttaatgagtta
aatattaatttacctagtgagttaaatatatagtttaaaaatgtatgagt
agtgaagatattttctgcagatactcattattcacagcaaaacattagaa
ctagaggctgtcttagttaatgtactattgctgtgaagagactccatgac
caaggcaacttatgaagaaagtgcttgtttgagggctgtttactgtttca
gagggtcagtcatggggtggtgggggcaggtaaacatgaatagcactaca
agagtagctgagagttcacatctgatccaaaggcaacaggaaaagaaaga
cagtgtctcagactggcatgggcttttcaaacctccaagcctacccctaa
agacacctctccttcagcaaagacacacttcaaaattctttttgagacta
ggacattcaaatatatgatcctacagggccacatatttattcaaaccacc
acacttgaataaatattttagaatcctaactaaaaattaaagagctaatt
attcatttaaattgatgatgtttcagtcctaggtgtattttatgccccca
gccttcatcgcaaccaaaaaaattagaactagagaaacgattaattttat
atcctttcaataattcatgaccattacctgcatgtagtatttctccattc
cttcatatttacttttccttgttctcttttcttcagtttacatagtatat
agtgttactatatattatttgttatatataaagtatatatattatatatt
acatatatattttatatatagccagattatataatgtgtatatgttatat
aggcatacataaacatgcatatttatatgtatatgtgatacatattaaca
tatagatgtaatataaatgtacatgctatatattgtatatattacaaata
tcttatataaatatgtatgaaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_54570539_54571619
seq2: B6Ng01-004H04.g_65_1139

seq1  GAATTCATTCTCATTTTGTATAGATTATTTGTATGCCTTCCTCTATTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCATTTTGTATAGATTATTTGTATGCCTTCCTCTATTCTC  50

seq1  TCCATTTGTATTATTCACCTTTACAACTCAATTTTAGAAACTATTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGTATTATTCACCTTTACAACTCAATTTTAGAAACTATTGACAG  100

seq1  TGTTTTATTAGACAAACAGTTTGAAATGCTTTCTATGATTTAATGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTAGACAAACAGTTTGAAATGCTTTCTATGATTTAATGAGTTA  150

seq1  AATATTAATTTACCTAGTGAGTTAAATATATAGTTTAAAAATGTATGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATTTACCTAGTGAGTTAAATATATAGTTTAAAAATGTATGAGT  200

seq1  AGTGAAGATATTTTCTGCAGATACTCATTATTCACAGCAAAACATTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATATTTTCTGCAGATACTCATTATTCACAGCAAAACATTAGAA  250

seq1  CTAGAGGCTGTCTTAGTTAATGTACTATTGCTGTGAAGAGACTCCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCTGTCTTAGTTAATGTACTATTGCTGTGAAGAGACTCCATGAC  300

seq1  CAAGGCAACTTATGAAGAAAGTGCTTGTTTGAGGGCTGTTTACTGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAACTTATGAAGAAAGTGCTTGTTTGAGGGCTGTTTACTGTTTCA  350

seq1  GAGGGTCAGTCATGGGGTGGTGGGGGCAGGTAAACATGAATAGCACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCAGTCATGGGGTGGTGGGGGCAGGTAAACATGAATAGCACTACA  400

seq1  AGAGTAGCTGAGAGTTCACATCTGATCCAAAGGCAACAGGAAAAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCTGAGAGTTCACATCTGATCCAAAGGCAACAGGAAAAGAAAGA  450

seq1  CAGTGTCTCAGACTGGCATGGGCTTTTCAAACCTCCAAGCCTACCCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCAGACTGGCATGGGCTTTTCAAACCTCCAAGCCTACCCCTAA  500

seq1  AGACACCTCTCCTTCAGCAAAGACACACTTCAAAATTCTTTTTGAGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTCTCCTTCAGCAAAGACACACTTCAAAATTCTTTTTGAGACTA  550

seq1  GGACATTCAAATATATGATCCTACAGGGCCACATATTTATTCAAACCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCAAATATATGATCCTACAGGGCCACATATTTATTCAAACCACC  600

seq1  ACACTTGAATAAATATTTTAGAATCCTAACTAAAAATTAAAGAGCTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAATAAATATTTTAGAATCCTAACTAAAAATTAAAGAGCTAATT  650

seq1  ATTCATTTAAATTGATGATGTTTCAGTCCTAGGTGTATTTTATGCCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTAAATTGATGATGTTTCAGTCCTAGGTGTATTTTATGCCCCCA  700

seq1  GCCTTCATCGCAACCAAAAAAATTAGAACTAGAGAAACGATTAATTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATCGCAACCAAAAAAATTAGAACTAGAGAAACGATTAATTTTAT  750

seq1  ATCCTTTCAATAATTCATGACCATTACCTGCATGTAGTATTTCTCCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCAATAATTCATGACCATTACCTGCATGTAGTATTTCTCCATTC  800

seq1  CTTCATATTTACTTTTCCTTGTTCTCTTTTCTTCAGTTTACATAGTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTTACTTTTCCTTGTTCTCTTTTCTTCAGTTTACATAGTATAT  850

seq1  AGTGTTACTATATATTATTTGTTATATATAAAGTATATATATTATATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACTATATATTATTTGTTATATATAAAGTATATATATTATATATT  900

seq1  ACATATATATTTTATATATAGCCAGATTATATAATGTGTATATGTTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATTTTATATATAGCCAGATTATATAATGTGTATATGTTATAT  950

seq1  AGGCATACATAAACATGCATATTTAATATGTATATGTGAATAACATATTA  1000
      |||||||||||||||||||||||| ||||||||||||||   ||||||||
seq2  AGGCATACATAAACATGCATATTT-ATATGTATATGTGA--TACATATTA  997

seq1  ACAATATAGATGTAAATATAAAATGTACATGCTATATATTGTATATA-TA  1049
      || |||||||||| ||||| ||||||||||||||||||||||||||| ||
seq2  AC-ATATAGATGT-AATAT-AAATGTACATGCTATATATTGTATATATTA  1044

seq1  CATATATCTTATATAAATTATGTATGATATAC  1081
      || |||||||||||||| ||||||||| ||||
seq2  CAAATATCTTATATAAA-TATGTATGAAATAC  1075