BAC Information

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BAC

Clone NameB6Ng01-006A17
Chromosome10 (Build37)
Map Location 3,789,027 - 3,987,252
singlet/doubletdoublet
Overlap geneLOC237252, LOC100041224
Upstream geneCnksr3, Oprm1, A130090K04Rik
Downstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006A17.bB6Ng01-006A17.g
ACCDH843012DH843013
length1,111945
definitionDH843012|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A17, 5' end.DH843013|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,789,027 - 3,790,153)(3,986,546 - 3,987,252)
sequence
gaattctctagaaatatggttcctggtatgttgcctgtgctttactaagt
ggctttacacgggttcacaaagatgcatcactagacaaagtgatatatat
aaaaataaacaaataataaggaaagaggccatgaaattggtctcagggga
ggggaaaatctagaaggaaaaatatgtgatgagtagagatgaatgttaga
tacatgtataaaattctcgaagagtagattaatatgtttctttaaatttt
ttataaggctgttattataattttgaaaatagaatcatatggataacaaa
tctagagttatgtatacatcatccaagataaatttgagatatctatcata
tatcaaccatccagtatccacctattggaaatctcttacttataaatgaa
ctattgctacttctgactctgtaatcaatcactatgctgacagtgtcaga
tttttaaaattctgtcccgtgcagagttagtccagcattgcttttcacat
ttacttttgaaggaccctcaaattttcaggtcctcttttggactctgtga
ctcactcttactaagaagacctttctaatacatcagtgtcatcatgaaaa
tcatgtcttactgctgtgtgtccatgtgataactgcatattgcccagaat
catgttttattgctgaactctgtgtaataactgaatccctgccagtggct
catgattgattcatgatttccttgtagataagagtgttctatttttctga
agttcttaatagtgtatgttaagtgttttcagaattgaacacatatgagt
atcatgacatagtgataaagtgctttgttgggctccactctcaaagcctc
tggttcagtagggttagaaagagatttgagaccctgattctctaattaga
gctccaggatgatgccaaagatgctgatgaatagattgaggtctgagcac
ctctggtttagactaatacactattaacagaaaggataattgttacaact
aagttactggataaggattgttgcaagagaaatttctagtcccccttata
aataaggtaataagtagcagtctatgactgctcatactctattgttttga
atcagaaagga

gaattcatttaacagttttgaaaagtctcatgttctaagaaatgaactat
tgtttggattcttggttgttaatattttgttaagaaagttgtgtctctgt
tgacgtgtagctttcttctcccatatgttttttataatacctctaggttt
agagaacttgagccttagaatgaattgcaactatttcggaatggagttgt
agttaaatagcatttcttcttttacttttcagtagaattctctgatacta
tctaggcatagtgttctgggtttctataggttttgagttattgattcggt
ttctgtaggagtcatgggactggttatgtgtctgtgtctcttcaatttag
cctgttaggtggttttctttctaggaattggttcctatcactgaaattat
ccaactcatcaccaatataagctgctcagagtaccacttagttctccttt
agtgtttagagcatcagtatcacaacatagcactgttaatatcttctgtt
ttctttacttatccactgatagctgattccatgtctttatccttgtgcat
agtgatataacataggttagtacaggtgtctctttcatatgctgatttca
tttgatttatgatacgtaggtaaccatctcatgagacttacctgcttgtt
tattaggagaagctccacagtgttctccagaatggctgtcaattcacatt
atcagcagtgagctcactcttccacaccctcggcatttgctgctatgact
gtctgtcattgtagtgctagccactctacctgtggtgagaatctagccca
tcattagtttgactcatgtgtcccagtgcttgctgtgtcttttctattca
atgtaacgtcaacagattgaccagctctttgagaaagccttcatttcagt
cactgggtttatttctagcacatcgtgatttgtcagagtttctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3789027_3790153
seq2: B6Ng01-006A17.b_31_1141

seq1  GAATTCTCTAGAAATATGGTTCCTGGTATGTTGCCTGTGCTTTACTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAAATATGGTTCCTGGTATGTTGCCTGTGCTTTACTAAGT  50

seq1  GGCTTTACACGGGTTCACAAAGATGCATCACTAGACAAAGTGATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACACGGGTTCACAAAGATGCATCACTAGACAAAGTGATATATAT  100

seq1  AAAAATAAACAAATAATAAGGAAAGAGGCCATGAAATTGGTCTCAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAACAAATAATAAGGAAAGAGGCCATGAAATTGGTCTCAGGGGA  150

seq1  GGGGAAAATCTAGAAGGAAAAATATGTGATGAGTAGAGATGAATGTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAATCTAGAAGGAAAAATATGTGATGAGTAGAGATGAATGTTAGA  200

seq1  TACATGTATAAAATTCTCGAAGAGTAGATTAATATGTTTCTTTAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATAAAATTCTCGAAGAGTAGATTAATATGTTTCTTTAAATTTT  250

seq1  TTATAAGGCTGTTATTATAATTTTGAAAATAGAATCATATGGATAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGGCTGTTATTATAATTTTGAAAATAGAATCATATGGATAACAAA  300

seq1  TCTAGAGTTATGTATACATCATCCAAGATAAATTTGAGATATCTATCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTTATGTATACATCATCCAAGATAAATTTGAGATATCTATCATA  350

seq1  TATCAACCATCCAGTATCCACCTATTGGAAATCTCTTACTTATAAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCATCCAGTATCCACCTATTGGAAATCTCTTACTTATAAATGAA  400

seq1  CTATTGCTACTTCTGACTCTGTAATCAATCACTATGCTGACAGTGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTACTTCTGACTCTGTAATCAATCACTATGCTGACAGTGTCAGA  450

seq1  TTTTTAAAATTCTGTCCCGTGCAGAGTTAGTCCAGCATTGCTTTTCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATTCTGTCCCGTGCAGAGTTAGTCCAGCATTGCTTTTCACAT  500

seq1  TTACTTTTGAAGGACCCTCAAATTTTCAGGTCCTCTTTTGGACTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTGAAGGACCCTCAAATTTTCAGGTCCTCTTTTGGACTCTGTGA  550

seq1  CTCACTCTTACTAAGAAGACCTTTCTAATACATCAGTGTCATCATGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTTACTAAGAAGACCTTTCTAATACATCAGTGTCATCATGAAAA  600

seq1  TCATGTCTTACTGCTGTGTGTCCATGTGATAACTGCATATTGCCCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTTACTGCTGTGTGTCCATGTGATAACTGCATATTGCCCAGAAT  650

seq1  CATGTTTTATTGCTGAACTCTGTGTAATAACTGAATCCCTGCCAGTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTATTGCTGAACTCTGTGTAATAACTGAATCCCTGCCAGTGGCT  700

seq1  CATGATTGATTCATGATTTCCTTGTAGATAAGAGTGTTCTATTTTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTGATTCATGATTTCCTTGTAGATAAGAGTGTTCTATTTTTCTGA  750

seq1  AGTTCTTAATAGTGTATGTTAAGTGTTTTCAGAATTGAACACATATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTAATAGTGTATGTTAAGTGTTTTCAGAATTGAACACATATGAGT  800

seq1  ATCATGACATAGTGATAAAGTGCTTTGTTGGGCTCCACTCTCAAAGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACATAGTGATAAAGTGCTTTGTTGGGCTCCACTCTCAAAGCCTC  850

seq1  TGGTTCAGTAGGGTTAGAAAGAGATTTGAGACCCTGATTCTCTAATTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGTAGGGTTAGAAAGAGATTTGAGACCCTGATTCTCTAATTAGA  900

seq1  GCTCCAGGATGATGCCAAAGATGCTGATGAATAGATTGAGGTCTGAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGATGATGCCAAAGATGCTGATGAATAGATTGAGGTCTGAGCAC  950

seq1  CTCTGGTTTAGACTAATACACTATTAACAG-AAGGATAAATTGTTACAAC  999
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  CTCTGGTTTAGACTAATACACTATTAACAGAAAGGAT-AATTGTTACAAC  999

seq1  TAAGTTACTGGATAAGGATTTGTTGCAAAGAGAAACTTCTAGTCACCCCT  1049
      |||||||||||||||||| ||||||| |||||||| |||||||| |||||
seq2  TAAGTTACTGGATAAGGA-TTGTTGC-AAGAGAAATTTCTAGTC-CCCCT  1046

seq1  TAACAAAATAGGTTTAAATAAGTTAGCAGTCTAATGACTTGCTCATTAAC  1099
      ||   ||||| | |  |||||| ||||||||| ||||| |||||||  ||
seq2  TA--TAAATAAGGT--AATAAG-TAGCAGTCT-ATGAC-TGCTCAT--AC  1087

seq1  TCATATTGTTTTAGAAGTCAAGAAAGGA  1127
      || ||||||||| ||| || ||||||||
seq2  TC-TATTGTTTT-GAA-TC-AGAAAGGA  1111


seq1: chr10_3986546_3987252
seq2: B6Ng01-006A17.g_64_770 (reverse)

seq1  TGCTGATAATGTGAATTGACAGCCATTCTGGAGAACACTGTGGAGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATAATGTGAATTGACAGCCATTCTGGAGAACACTGTGGAGCTTCT  50

seq1  CCTAATAAACAAGCAGGTAAGTCTCATGAGATGGTTACCTACGTATCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAACAAGCAGGTAAGTCTCATGAGATGGTTACCTACGTATCATA  100

seq1  AATCAAATGAAATCAGCATATGAAAGAGACACCTGTACTAACCTATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATGAAATCAGCATATGAAAGAGACACCTGTACTAACCTATGTTA  150

seq1  TATCACTATGCACAAGGATAAAGACATGGAATCAGCTATCAGTGGATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTATGCACAAGGATAAAGACATGGAATCAGCTATCAGTGGATAAG  200

seq1  TAAAGAAAACAGAAGATATTAACAGTGCTATGTTGTGATACTGATGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAACAGAAGATATTAACAGTGCTATGTTGTGATACTGATGCTCT  250

seq1  AAACACTAAAGGAGAACTAAGTGGTACTCTGAGCAGCTTATATTGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTAAAGGAGAACTAAGTGGTACTCTGAGCAGCTTATATTGGTGAT  300

seq1  GAGTTGGATAATTTCAGTGATAGGAACCAATTCCTAGAAAGAAAACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGATAATTTCAGTGATAGGAACCAATTCCTAGAAAGAAAACCACC  350

seq1  TAACAGGCTAAATTGAAGAGACACAGACACATAACCAGTCCCATGACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCTAAATTGAAGAGACACAGACACATAACCAGTCCCATGACTCC  400

seq1  TACAGAAACCGAATCAATAACTCAAAACCTATAGAAACCCAGAACACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAACCGAATCAATAACTCAAAACCTATAGAAACCCAGAACACTAT  450

seq1  GCCTAGATAGTATCAGAGAATTCTACTGAAAAGTAAAAGAAGAAATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATAGTATCAGAGAATTCTACTGAAAAGTAAAAGAAGAAATGCTA  500

seq1  TTTAACTACAACTCCATTCCGAAATAGTTGCAATTCATTCTAAGGCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTACAACTCCATTCCGAAATAGTTGCAATTCATTCTAAGGCTCAA  550

seq1  GTTCTCTAAACCTAGAGGTATTATAAAAAACATATGGGAGAAGAAAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTAAACCTAGAGGTATTATAAAAAACATATGGGAGAAGAAAGCTA  600

seq1  CACGTCAACAGAGACACAACTTTCTTAACAAAATATTAACAACCAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCAACAGAGACACAACTTTCTTAACAAAATATTAACAACCAAGAAT  650

seq1  CCAAACAATAGTTCATTTCTTAGAACATGAGACTTTTCAAAACTGTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAATAGTTCATTTCTTAGAACATGAGACTTTTCAAAACTGTTAAA  700

seq1  TGAATTC  707
      |||||||
seq2  TGAATTC  707


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