BAC Information

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BAC

Clone NameB6Ng01-006G20
Chromosome10 (Build37)14 (Build37)
Map Location 102,218,049 - 102,219,14285,304,870 - 85,304,953
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci
Downstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006G20.bB6Ng01-006G20.g
ACCDH843290DH843291
length1,081174
definitionDH843290|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G20, 5' end.DH843291|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,218,049 - 102,219,142)(85,304,870 - 85,304,953)
sequence
gaattcagtggagcagggccctggtggcagtggcttcagaggatgtggct
ataaacttcaggaaggaaaagtaggctttgctggaactttcttggaagag
tgtgtaccaagatatgattctgggaactggctggaacattgctgctttag
gaaacaaacgacaacatcagcatgttgaaggcctttatttcaatgccaga
agaaatctaagacactgtgtatgttaccctgcatgtgaactacacaagcc
ccagaaataaccgatataacattttttctcaattattaaaagaaatatgg
ggactcacattgagattagaccttgaaaatgaaagaagctctcaacctcc
aattttattttagtgggtttctgaccccaaaaaagaaattgataagtctc
catctcctttggatcagctaaggtgagtgttgcattatctcccataggta
acgaatatagacccttgtcatctggaagcagttaccaaagaggtgatctg
ctgaccctcagcttcccatgaaaatcagtgaggatcatgtcactcatggg
gtaatgatccaggaaataaggccagctctcataatttaactccaagaccc
agcaactaaggaaggccatgaatttggcctttctctaggctgctgaggtt
aaacaaacatcttctaacaaactaagtaaagaatctcctaaaatgcatgt
gtttgtgtgcacaatgtgcattatagatacacataggatggcatatgcca
gataatggaaataataaaccctggtgtcattgagaaatgacaaaacataa
aaatgcataggaactcatatcatgtcagtaattcctttttcttagcttgg
tgtttaatatatggttgtgatattgtcacctgaacatgccatttgcttaa
ttcaaaatgttaatggcataagtgtaatcatggctctgtttcttttggta
caatcccttttttcttttcatgaaaaataatttttcacgcactatatgtt
ctgatgtattttcctcttcatctcccctaaatgcttcacccacctcccca
gcttcactctttctcgttctctctttaaaag
catgagttgaactgcactgattataggaactgaatggacctgttcgaatt
caatggaactcaactctgttcaactaaactgcactgaattcaactgaact
aaactctcttctcgctcttctctctctctctctctcatatatatatggtg
tgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102218049_102219142
seq2: B6Ng01-006G20.b_45_1125 (reverse)

seq1  CTTTTAAAAGAGAGAACGAGAAAGGAAGTGAAGCTGGGGAGGTGGGTGGA  50
      ||||| ||||||||||||||||||  ||||||||||||||||||||| ||
seq2  CTTTT-AAAGAGAGAACGAGAAAG--AGTGAAGCTGGGGAGGTGGGT-GA  46

seq1  AGCAATTAGGGGAGGATTGAAAGAGGGGAAAATACAATCAGAACATATAG  100
      |||| |||||||||   |||   || ||||||||| ||||||||||||||
seq2  AGCATTTAGGGGAG--ATGA---AGAGGAAAATAC-ATCAGAACATATAG  90

seq1  TGCGTGAAAAATTATTTTTCAATGAAAAAGAAAAAAGGGATTGTACCAAA  150
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TGCGTGAAAAATTATTTTTC-ATG-AAAAGAAAAAAGGGATTGTACCAAA  138

seq1  AGAAACAGAGCCATGATTACACTTATGCCATTAACATTTTTGAATTAAGC  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAAACAGAGCCATGATTACACTTATGCCATTAACA-TTTTGAATTAAGC  187

seq1  AAATGGCATGTTCAGGTGACAATATCACAACCATATATTAAACACCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCATGTTCAGGTGACAATATCACAACCATATATTAAACACCAAGC  237

seq1  TAAGAAAAAGGAATTACTGACATGATATGAGTTCCTATGCATTTTTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAGGAATTACTGACATGATATGAGTTCCTATGCATTTTTATGT  287

seq1  TTTGTCATTTCTCAATGACACCAGGGTTTATTATTTCCATTATCTGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTTCTCAATGACACCAGGGTTTATTATTTCCATTATCTGGCAT  337

seq1  ATGCCATCCTATGTGTATCTATAATGCACATTGTGCACACAAACACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCCTATGTGTATCTATAATGCACATTGTGCACACAAACACATGC  387

seq1  ATTTTAGGAGATTCTTTACTTAGTTTGTTAGAAGATGTTTGTTTAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGAGATTCTTTACTTAGTTTGTTAGAAGATGTTTGTTTAACCTC  437

seq1  AGCAGCCTAGAGAAAGGCCAAATTCATGGCCTTCCTTAGTTGCTGGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTAGAGAAAGGCCAAATTCATGGCCTTCCTTAGTTGCTGGGTCT  487

seq1  TGGAGTTAAATTATGAGAGCTGGCCTTATTTCCTGGATCATTACCCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTAAATTATGAGAGCTGGCCTTATTTCCTGGATCATTACCCCATG  537

seq1  AGTGACATGATCCTCACTGATTTTCATGGGAAGCTGAGGGTCAGCAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATGATCCTCACTGATTTTCATGGGAAGCTGAGGGTCAGCAGATC  587

seq1  ACCTCTTTGGTAACTGCTTCCAGATGACAAGGGTCTATATTCGTTACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTGGTAACTGCTTCCAGATGACAAGGGTCTATATTCGTTACCTA  637

seq1  TGGGAGATAATGCAACACTCACCTTAGCTGATCCAAAGGAGATGGAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATAATGCAACACTCACCTTAGCTGATCCAAAGGAGATGGAGACT  687

seq1  TATCAATTTCTTTTTTGGGGTCAGAAACCCACTAAAATAAAATTGGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTTCTTTTTTGGGGTCAGAAACCCACTAAAATAAAATTGGAGGT  737

seq1  TGAGAGCTTCTTTCATTTTCAAGGTCTAATCTCAATGTGAGTCCCCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCTTCTTTCATTTTCAAGGTCTAATCTCAATGTGAGTCCCCATAT  787

seq1  TTCTTTTAATAATTGAGAAAAAATGTTATATCGGTTATTTCTGGGGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAATAATTGAGAAAAAATGTTATATCGGTTATTTCTGGGGCTTG  837

seq1  TGTAGTTCACATGCAGGGTAACATACACAGTGTCTTAGATTTCTTCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCACATGCAGGGTAACATACACAGTGTCTTAGATTTCTTCTGGC  887

seq1  ATTGAAATAAAGGCCTTCAACATGCTGATGTTGTCGTTTGTTTCCTAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATAAAGGCCTTCAACATGCTGATGTTGTCGTTTGTTTCCTAAAG  937

seq1  CAGCAATGTTCCAGCCAGTTCCCAGAATCATATCTTGGTACACACTCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGTTCCAGCCAGTTCCCAGAATCATATCTTGGTACACACTCTTC  987

seq1  CAAGAAAGTTCCAGCAAAGCCTACTTTTCCTTCCTGAAGTTTATAGCCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTTCCAGCAAAGCCTACTTTTCCTTCCTGAAGTTTATAGCCAC  1037

seq1  ATCCTCTGAAGCCACTGCCACCAGGGCCCTGCTCCACTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGAAGCCACTGCCACCAGGGCCCTGCTCCACTGAATTC  1081

seq1: chr14_85304870_85304953
seq2: B6Ng01-006G20.g_163_237 (reverse)

seq1  CACACACACACAGAGAGAGACACACACACACACA-CAGAGAGAGAGAGAG  49
      |||||||||||        ||||||||||||||| || | | | |  |||
seq2  CACACACACAC--------ACACACACACACACACCATATATATA-TGAG  41

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGTTTA  84
      ||||||||||||||| |||| ||||||||||||||
seq2  AGAGAGAGAGAGAGA-AGAGCGAGAAGAGAGTTTA  75