BAC Information

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BAC

Clone NameB6Ng01-006I19
Chromosome10 (Build37)
Map Location 92,983,104 - 93,154,298
singlet/doubletdoublet
Overlap geneAmdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338
Upstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal
Downstream geneLOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I19.bB6Ng01-006I19.g
ACCDH843376DH843377
length1,015264
definitionDH843376|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I19, 5' end.DH843377|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,983,104 - 92,984,118)(93,154,035 - 93,154,298)
sequence
gaattcttcccttgtatagacttaatcgggaagaggtctcggagtctagt
atcttagacaaagtccaggataagttataaggtgtgctggtccttctaca
ggggcagcatccgtgatctgatcaagacagggatcagattgatcatgaac
atactctaagcaactggaaaacaagcttgtaccatcaggcctgacttctc
cttacttttaaaaattacatactttatttttttttattttacatgctagg
tattttgtctgcatgtctgtccatcatgtgccatgcctagtgcttgtgaa
ggccggaagagtgtatcagattccctgacagacagctgtccttggaagag
cagccagcactcttaatggtggagccatctctgacacccccacccccacc
ccttacgcttgtaaagttacatctagtcaagtgtttgactcctgtcatga
gtatcatgccacctagctagcacagtgtgtggcatgacccaggtatcacc
tgcaatacctgcagtctggtattaaatgatttttccctctagttgaagac
atactgtgataactactgaaccaaacaagtgcagtattactaggtcatcc
agaaaggcctgagggaggtggctggaccggcctttgcttgtgggagtcaa
gagaagggagaaaaagaagaaattcaaggaacctacggtgtcagaaaata
ttcatgtcagaaaatcactcctgtggtttcctgtgtggcaacttcttttt
ttaaaaaatgttatttggcatgaggctggagcaatgaatggctcagcagc
taagacttggtggatgaattcctagacaagtggtaaccaagatcccccga
gtctttgcctttgacaacttacagcccaggcaggagccaggttagaaaac
gaatgatcatcatgggtgtgatgtgaagaaccaatcagaaaccaggtcat
ggagaagcataaattcacgataactgcacagtggggggaagggtaggctt
cagtagtgttgggtg
ttttgtgagtgcggatcagtgtttaacgcctctgagtttgaagacttcgt
aatcagtcatcacttggagtggctactgggtgttaagggactgccggtga
agctgtctcataaggcaagggtgctgaaacaagaaagttaagacctcccc
accctctcaggagaaggggctgggggacgggggcagggactctgtgaggg
ggagatgagggggcagccactgggatgtaaaagagagagaagggggaagc
gggagggggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92983104_92984118
seq2: B6Ng01-006I19.b_45_1059

seq1  GAATTCTTCCCTTGTATAGACTTAATCGGGAAGAGGTCTCGGAGTCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTTGTATAGACTTAATCGGGAAGAGGTCTCGGAGTCTAGT  50

seq1  ATCTTAGACAAAGTCCAGGATAAGTTATAAGGTGTGCTGGTCCTTCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGACAAAGTCCAGGATAAGTTATAAGGTGTGCTGGTCCTTCTACA  100

seq1  GGGGCAGCATCCGTGATCTGATCAAGACAGGGATCAGATTGATCATGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCATCCGTGATCTGATCAAGACAGGGATCAGATTGATCATGAAC  150

seq1  ATACTCTAAGCAACTGGAAAACAAGCTTGTACCATCAGGCCTGACTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTAAGCAACTGGAAAACAAGCTTGTACCATCAGGCCTGACTTCTC  200

seq1  CTTACTTTTAAAAATTACATACTTTATTTTTTTTTATTTTACATGCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTTAAAAATTACATACTTTATTTTTTTTTATTTTACATGCTAGG  250

seq1  TATTTTGTCTGCATGTCTGTCCATCATGTGCCATGCCTAGTGCTTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCTGCATGTCTGTCCATCATGTGCCATGCCTAGTGCTTGTGAA  300

seq1  GGCCGGAAGAGTGTATCAGATTCCCTGACAGACAGCTGTCCTTGGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGAAGAGTGTATCAGATTCCCTGACAGACAGCTGTCCTTGGAAGAG  350

seq1  CAGCCAGCACTCTTAATGGTGGAGCCATCTCTGACACCCCCACCCCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCACTCTTAATGGTGGAGCCATCTCTGACACCCCCACCCCCACC  400

seq1  CCTTACGCTTGTAAAGTTACATCTAGTCAAGTGTTTGACTCCTGTCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACGCTTGTAAAGTTACATCTAGTCAAGTGTTTGACTCCTGTCATGA  450

seq1  GTATCATGCCACCTAGCTAGCACAGTGTGTGGCATGACCCAGGTATCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATGCCACCTAGCTAGCACAGTGTGTGGCATGACCCAGGTATCACC  500

seq1  TGCAATACCTGCAGTCTGGTATTAAATGATTTTTCCCTCTAGTTGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATACCTGCAGTCTGGTATTAAATGATTTTTCCCTCTAGTTGAAGAC  550

seq1  ATACTGTGATAACTACTGAACCAAACAAGTGCAGTATTACTAGGTCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGATAACTACTGAACCAAACAAGTGCAGTATTACTAGGTCATCC  600

seq1  AGAAAGGCCTGAGGGAGGTGGCTGGACCGGCCTTTGCTTGTGGGAGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCCTGAGGGAGGTGGCTGGACCGGCCTTTGCTTGTGGGAGTCAA  650

seq1  GAGAAGGGAGAAAAAGAAGAAATTCAAGGAACCTACGGTGTCAGAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAGAAAAAGAAGAAATTCAAGGAACCTACGGTGTCAGAAAATA  700

seq1  TTCATGTCAGAAAATCACTCCTGTGGTTTCCTGTGTGGCAACTTCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCAGAAAATCACTCCTGTGGTTTCCTGTGTGGCAACTTCTTTTT  750

seq1  TTAAAAAATGTTATTTGGCATGAGGCTGGAGCAATGAATGGCTCAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATGTTATTTGGCATGAGGCTGGAGCAATGAATGGCTCAGCAGC  800

seq1  TAAGACTTGGTGGATGAATTCCTAGACAAGTGGTAACCAAGATCCCCCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTGGTGGATGAATTCCTAGACAAGTGGTAACCAAGATCCCCCGA  850

seq1  GTCTTTGCCTTTGACAACTTACAGCCCAGGCAGGGAGCCAGGTTAGAAAA  900
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GTCTTTGCCTTTGACAACTTACAGCCCAGGCA-GGAGCCAGGTTAG-AAA  898

seq1  ACGAATGATCATCATGGGTGGTGATGTGAAGAACCAATCAGAAACCAGGT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACGAATGATCATCATGGGT-GTGATGTGAAGAACCAATCAGAAACCAGGT  947

seq1  CATGGAG-AGCAT-AATTCACGATAACTGCACAGTGGGGG--AGGGTAGG  996
      ||||||| ||||| ||||||||||||||||||||||||||  ||||||||
seq2  CATGGAGAAGCATAAATTCACGATAACTGCACAGTGGGGGGAAGGGTAGG  997

seq1  CTTCAGGTAGTGGTGGGGG  1015
      ||||| |||||| |||| |
seq2  CTTCA-GTAGTGTTGGGTG  1015

seq1: chr10_93154035_93154298
seq2: B6Ng01-006I19.g_74_337 (reverse)

seq1  CCTCTCCCCCTCCCGCTTCCCCCTTCTCTCTCTTTTACATCCCAGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCTCCCGCTTCCCCCTTCTCTCTCTTTTACATCCCAGTGGCT  50

seq1  GCCCCCTCATCTCCCCCTCACAGAGTCCCTGCCCCCGTCCCCCAGCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTCATCTCCCCCTCACAGAGTCCCTGCCCCCGTCCCCCAGCCCCT  100

seq1  TCTCCTGAGAGGGTGGGGAGGTCTTAACTTTCTTGTTTCAGCACCCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGAGGGTGGGGAGGTCTTAACTTTCTTGTTTCAGCACCCTTGC  150

seq1  CTTATGAGACAGCTTCACCGGCAGTCCCTTAACACCCAGTAGCCACTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGACAGCTTCACCGGCAGTCCCTTAACACCCAGTAGCCACTCCA  200

seq1  AGTGATGACTGATTACGAAGTCTTCAAACTCAGAGGCGTTAAACACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGACTGATTACGAAGTCTTCAAACTCAGAGGCGTTAAACACTGAT  250

seq1  CCGCACTCACAAAA  264
      ||||||||||||||
seq2  CCGCACTCACAAAA  264