BAC Information

Click to search

BAC

Clone NameB6Ng01-007P06
Chromosome10 (Build37)
Map Location 72,851,693 - 72,987,429
singlet/doubletdoublet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007P06.bB6Ng01-007P06.g
ACCDH844374DH844375
length925391
definitionDH844374|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P06, 5' end.DH844375|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,851,693 - 72,852,591)(72,987,034 - 72,987,429)
sequence
gaattctttgttttattttatatgtatatgagtatgttgtgtatttacat
gtctatgccaagttcatatgtgatgcctgagaccagaaaaggatgctaga
tctcaagaaactgaagttacagatagttgtgagctgctctgtgtttgttg
gggattgtccctaggcctcctgctaaagcagctagtggtcttaaattctg
agcaactctctactacattgtggtagtgatcttgtgtaatatagttctat
agtgaatgagaatgttctcttggagaaaaattaccaacaggcaaatactg
tgagcattttctctcctctgatttagtccaaaatgttgccactttgattc
cttttgtaagaattccttgattcattgtatgtctttaacaagtttggtaa
ttcaattcttaagaagccacaagatttctttctttatttcttccttgacc
aagttattactgagtagagtattgttcagtttccatatgcatatgggctt
tccattgtttttattgtttttgaagaacagccttagtacatggtgatctg
atacgatgcatgatattatttcaatctgctgtgtctgttgaagcctattt
ttttgaccaattatatggtcaattttggagaaggtaccgtgaggtactga
gaggaacgtatatttcttttgtttttaggatgaaatgttctataggtatc
agttaaatccattttggtttcataacttctgttagtttcactgtgtctct
gttttagtttctgtttccatgatctggccatatctaagagtggggtgttt
gaaagtcttccactattattttgtcagtgcaatgcatgcttggagcttag
aaagttcccttaagaatgtgggtgtcttgcattggagctagaagttcaga
atgagaattcacctgggagatttgt
ttctgtttggttcttctgtcttctacaattgagtgactccttcatttaca
gaagcttccttagtttcctttttagagtctcagttgcttcgtttaacttt
tcttcatgctgtttgttctgccttccaaattggctatttatctattttgt
ctgggttcttaatagattttcttctttcactcatctacttacttgggtcc
tttaggtggtcattgatcctttttaaatattgcaatctgaatttccttct
ggcattttgcctatatcacctttggtttgtggtttcaaggagtagtgcct
tttatagggatcagcatactggtctgttgtttcctttcttgtctcttcat
tctattgttctcttctctcctctcctctcctctcctctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72851693_72852591
seq2: B6Ng01-007P06.b_44_942

seq1  GAATTCTTTGTTTTATTTTATATGTATATGAGTATGTTGTGTATTTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTTATTTTATATGTATATGAGTATGTTGTGTATTTACAT  50

seq1  GTCTATGCCAAGTTCATATGTGATGCCTGAGACCAGAAAAGGATGCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGCCAAGTTCATATGTGATGCCTGAGACCAGAAAAGGATGCTAGA  100

seq1  TCTCAAGAAACTGAAGTTACAGATAGTTGTGAGCTGCTCTGTGTTTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAAACTGAAGTTACAGATAGTTGTGAGCTGCTCTGTGTTTGTTG  150

seq1  GGGATTGTCCCTAGGCCTCCTGCTAAAGCAGCTAGTGGTCTTAAATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGTCCCTAGGCCTCCTGCTAAAGCAGCTAGTGGTCTTAAATTCTG  200

seq1  AGCAACTCTCTACTACATTGTGGTAGTGATCTTGTGTAATATAGTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCTCTACTACATTGTGGTAGTGATCTTGTGTAATATAGTTCTAT  250

seq1  AGTGAATGAGAATGTTCTCTTGGAGAAAAATTACCAACAGGCAAATACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGAGAATGTTCTCTTGGAGAAAAATTACCAACAGGCAAATACTG  300

seq1  TGAGCATTTTCTCTCCTCTGATTTAGTCCAAAATGTTGCCACTTTGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTTCTCTCCTCTGATTTAGTCCAAAATGTTGCCACTTTGATTC  350

seq1  CTTTTGTAAGAATTCCTTGATTCATTGTATGTCTTTAACAAGTTTGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAAGAATTCCTTGATTCATTGTATGTCTTTAACAAGTTTGGTAA  400

seq1  TTCAATTCTTAAGAAGCCACAAGATTTCTTTCTTTATTTCTTCCTTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTTAAGAAGCCACAAGATTTCTTTCTTTATTTCTTCCTTGACC  450

seq1  AAGTTATTACTGAGTAGAGTATTGTTCAGTTTCCATATGCATATGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTACTGAGTAGAGTATTGTTCAGTTTCCATATGCATATGGGCTT  500

seq1  TCCATTGTTTTTATTGTTTTTGAAGAACAGCCTTAGTACATGGTGATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTTTTTATTGTTTTTGAAGAACAGCCTTAGTACATGGTGATCTG  550

seq1  ATACGATGCATGATATTATTTCAATCTGCTGTGTCTGTTGAAGCCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGATGCATGATATTATTTCAATCTGCTGTGTCTGTTGAAGCCTATTT  600

seq1  TTTTGACCAATTATATGGTCAATTTTGGAGAAGGTACCGTGAGGTACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCAATTATATGGTCAATTTTGGAGAAGGTACCGTGAGGTACTGA  650

seq1  GAGGAACGTATA-TTCTTTTG-TTTTAGGATGAAATGTTCTATAGGTATC  698
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GAGGAACGTATATTTCTTTTGTTTTTAGGATGAAATGTTCTATAGGTATC  700

seq1  AGTTAAATCCATTT--GGTTCATAACTTCTGTTAGTTTCACTGTGTCTCT  746
      ||||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  AGTTAAATCCATTTTGGTTTCATAACTTCTGTTAGTTTCACTGTGTCTCT  750

seq1  G-TTTAGTTTCTGTTTCCATGATCTGGCCATATCTAAGAGTGGGGTGTT-  794
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTTTAGTTTCTGTTTCCATGATCTGGCCATATCTAAGAGTGGGGTGTTT  800

seq1  -GAAGTCTCCCACTATTATTGTGTGCAGTGCAATGCATGCTTGGAGCTTT  843
        |||||| ||||||||||| ||| |||||||||||||||||||||| ||
seq2  GAAAGTCTTCCACTATTATTTTGT-CAGTGCAATGCATGCTTGGAGC-TT  848

seq1  AGTAAAGTTTCCTTTATGAATGTGGGTGTCCTTGCATTTGGAGCATAGAT  893
      || |||| |||| ||| |||||||||||| |||||| ||||||| |||| 
seq2  AG-AAAG-TTCCCTTAAGAATGTGGGTGT-CTTGCA-TTGGAGC-TAGAA  893

seq1  GTTCAG  899
      ||||||
seq2  GTTCAG  899

seq1: chr10_72987034_72987429
seq2: B6Ng01-007P06.g_67_462 (reverse)

seq1  GGAGAGGAGAGGAGAGGAGAGGAGAGAAGAGAACAATAGAATGAAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAGGAGAGGAGAGGAGAGAAGAGAACAATAGAATGAAGAGAC  50

seq1  AAGAAAGGAAACAACAGACCAGTATGCTGATCCCTATAAAAGGCACTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAAACAACAGACCAGTATGCTGATCCCTATAAAAGGCACTACT  100

seq1  CCTTGAAACCACAAACCAAAGGTGATATAGGCAAAATGCCAGAAGGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAACCACAAACCAAAGGTGATATAGGCAAAATGCCAGAAGGAAAT  150

seq1  TCAGATTGCAATATTTAAAAAGGATCAATGACCACCTAAAGGACCCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGCAATATTTAAAAAGGATCAATGACCACCTAAAGGACCCAAGT  200

seq1  AAGTAGATGAGTGAAAGAAGAAAATCTATTAAGAACCCAGACAAAATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGAGTGAAAGAAGAAAATCTATTAAGAACCCAGACAAAATAGA  250

seq1  TAAATAGCCAATTTGGAAGGCAGAACAAACAGCATGAAGAAAAGTTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCCAATTTGGAAGGCAGAACAAACAGCATGAAGAAAAGTTAAAC  300

seq1  GAAGCAACTGAGACTCTAAAAAGGAAACTAAGGAAGCTTCTGTAAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACTGAGACTCTAAAAAGGAAACTAAGGAAGCTTCTGTAAATGAA  350

seq1  GGAGTCACTCAATTGTAGAAGACAGAAGAACCAAACAGAAGAATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCACTCAATTGTAGAAGACAGAAGAACCAAACAGAAGAATTC  396