BAC Information

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BAC

Clone NameB6Ng01-013N20
Chromosome10 (Build37)
Map Location 104,265,401 - 104,370,744
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N20.bB6Ng01-013N20.g
ACCDH848571DH848572
length258843
definitionDH848571|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N20, 5' end.DH848572|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,265,401 - 104,265,659)(104,369,903 - 104,370,744)
sequence
tttggctggccaccctacctactcagtgacttccaggcagaaaatctgga
gtgtgcctgttggggtgggatgaggggaggttttcctgtgggaataatac
ctaaattcatcctcttatctcgactcacattgttagagccaaccttacct
tttaatttttaatgacattgtctaagagataggggaaacaaaatgcctct
aacctgtaaattccttgcccaaggactgtcacttcctgaaaatctcttgt
ttatagga
gaattccactactggggtatactcttggctttttaagatgtatgtagcta
gaagtaacattaaagttaaagtttgactgcatatgaattaattaataatt
ttcaagttcactataagtctttttaagtttgtcagtatcatctggaagat
aaaaagaatcctaaatatataataaccttatagcagagctacaaaagaca
tgaagaaaatccacatagatgtatgggaaatcagataaaaatgacaagat
attgtcatctcctctctttcagtaatagattgagtagtatatgccagatc
tccatttttgtgatatgtatatttctatcaagaaacctgaccaatttggc
atttaagaaaagctacaagcaaggacatttaagcctgtggtttttagtat
gaagaaagcacacaacaaaaaaaaatgtgtcatttaattaactaatggga
aataactttcaaatcatcaaggtcttagagagtactgttttaccaccatg
ggatgaattagaggtcgaaccttaaatttttagaacaactaaatgcactt
aatccccttcccccacagattttaataaagtaatctaaatatcaaactag
actagaaatcattaagaatataaatatataaaatcatttcaagcttttta
agaataaaaatatagaagatatatatgtgcatacatgtatatatgtatat
acgtatatatgtatatatgtatacacgtacatatgtacatacgtacatat
gtatatatatgtaaatatatgcatacatgtacacacgtatatatgcatac
acacatatacattatatacgtatatatgtatatattatctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104265401_104265659
seq2: B6Ng01-013N20.b_54_311

seq1  TTTGGCTGGCCACCCTACCTACTCAGTGACTTCCAGGCAGAAAATCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGGCCACCCTACCTACTCAGTGACTTCCAGGCAGAAAATCTGGA  50

seq1  GTGTGCCTGTTGGGGTGGGATGAGGGGAGGTAATTCCTGTGGGAATAATA  100
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GTGTGCCTGTTGGGGTGGGATGAGGGGAGGT-TTTCCTGTGGGAATAATA  99

seq1  CCTAAATTCATCCTCTTATCTCGACTCACATTGTGAGAGCCAAAGTTACC  150
      |||||||||||||||||||||||||||||||||| ||||||||  |||||
seq2  CCTAAATTCATCCTCTTATCTCGACTCACATTGTTAGAGCCAACCTTACC  149

seq1  TTTTAAGTTTTAATGACATTGCCTAAGAGATAGGGGAAACAAAATGCCTC  200
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTAATTTTTAATGACATTGTCTAAGAGATAGGGGAAACAAAATGCCTC  199

seq1  TAACCTGTAAGTTCCTTGCCCAAGGACAGACACTTCCTGAAAAGCTCTTG  250
      |||||||||| |||||||||||||||| | ||||||||||||| ||||||
seq2  TAACCTGTAAATTCCTTGCCCAAGGACTGTCACTTCCTGAAAATCTCTTG  249

seq1  TTTATAGGA  259
      |||||||||
seq2  TTTATAGGA  258

seq1: chr10_104369903_104370744
seq2: B6Ng01-013N20.g_67_909 (reverse)

seq1  CATAGATAATATATACATATATACGTATAT-ATGTATATGTGTGTATGCA  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATAGATAATATATACATATATACGTATATAATGTATATGTGTGTATGCA  50

seq1  TATATACGTGTGTACATGTATGCATATATGTACATATATATACATATGTA  99
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATATACGTGTGTACATGTATGCATATATTTACATATATATACATATGTA  100

seq1  CGTATGTACATATGTACGTGTATACATATATACATATATACGTATATACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGTACATATGTACGTGTATACATATATACATATATACGTATATACA  150

seq1  TATATACATGTATGCACATATATATCTTCTATATTTTTATTCTTAAAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATGTATGCACATATATATCTTCTATATTTTTATTCTTAAAAAG  200

seq1  CTTGAAATGATTTTATATATTTATATTCTTAATGATTTCTAGTCTAGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATGATTTTATATATTTATATTCTTAATGATTTCTAGTCTAGTTT  250

seq1  GATATTTAGATTACTTTATTAAAATCTGTGGGGGAAGGGGATTAAGTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAGATTACTTTATTAAAATCTGTGGGGGAAGGGGATTAAGTGCA  300

seq1  TTTAGTTGTTCTAAAAATTTAAGGTTCGACCTCTAATTCATCCCATGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTGTTCTAAAAATTTAAGGTTCGACCTCTAATTCATCCCATGGTG  350

seq1  GTAAAACAGTACTCTCTAAGACCTTGATGATTTGAAAGTTATTTCCCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAGTACTCTCTAAGACCTTGATGATTTGAAAGTTATTTCCCATT  400

seq1  AGTTAATTAAATGACACATTTTTTTTTGTTGTGTGCTTTCTTCATACTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTAAATGACACATTTTTTTTTGTTGTGTGCTTTCTTCATACTAA  450

seq1  AAACCACAGGCTTAAATGTCCTTGCTTGTAGCTTTTCTTAAATGCCAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGGCTTAAATGTCCTTGCTTGTAGCTTTTCTTAAATGCCAAAT  500

seq1  TGGTCAGGTTTCTTGATAGAAATATACATATCACAAAAATGGAGATCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGTTTCTTGATAGAAATATACATATCACAAAAATGGAGATCTGG  550

seq1  CATATACTACTCAATCTATTACTGAAAGAGAGGAGATGACAATATCTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTACTCAATCTATTACTGAAAGAGAGGAGATGACAATATCTTGT  600

seq1  CATTTTTATCTGATTTCCCATACATCTATGTGGATTTTCTTCATGTCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATCTGATTTCCCATACATCTATGTGGATTTTCTTCATGTCTTT  650

seq1  TGTAGCTCTGCTATAAGGTTATTATATATTTAGGATTCTTTTTATCTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCTGCTATAAGGTTATTATATATTTAGGATTCTTTTTATCTTCC  700

seq1  AGATGATACTGACAAACTTAAAAAGACTTATAGTGAACTTGAAAATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATACTGACAAACTTAAAAAGACTTATAGTGAACTTGAAAATTATT  750

seq1  AATTAATTCATATGCAGTCAAACTTTAACTTTAATGTTACTTCTAGCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTCATATGCAGTCAAACTTTAACTTTAATGTTACTTCTAGCTAC  800

seq1  ATACATCTTAAAAAGCCAAGAGTATACCCCAGTAGTGGAATTC  842
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTTAAAAAGCCAAGAGTATACCCCAGTAGTGGAATTC  843