BAC Information

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BAC

Clone NameB6Ng01-014C03
Chromosome1 (Build37)10 (Build37)
Map Location 50,832,186 - 50,832,71996,215,189 - 96,216,300
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014C03.bB6Ng01-014C03.g
ACCDH848763DH848764
length9871,110
definitionDH848763|Mus musculus domesticus DNA, BAC clone: B6Ng01-014C03, 5' end.DH848764|Mus musculus domesticus DNA, BAC clone: B6Ng01-014C03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,186 - 50,832,719)(96,215,189 - 96,216,300)
sequence
gaattctttgttcaggtctgagccccatttttaatggggttatttgattt
tccggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttgggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgctttgcagaagctttgcaattttat
gaggtctcatatatcgattcttgatcttacagcacaagccattgctgttc
tattcaggaattttccccctgtacccatatcttcgaggcttttccctact
ttctcctctataagtttcaatgtctctggttttatgtggagttccttaat
ccacttagatttgatcttagtacaaggagatagaaatggatcaattcgca
ttcttctacatgataaccaccagttgtgccagcaccatttgttgaaactg
ctgtcttttttccactggatggtttttgctcccttgtcaaagatcaagtg
actataggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccaataccatgcagtttttatcacaattgct
ctgtagtacagctttaggtacggcatggtgattccaccagaggttctttt
atccttgagaaagagtttttgctatcctaggttgttattccagatgaatc
tgctgattgccctttctaattcattgaagaattgagttggaattttaatg
ggtattgcattgaatctgtagattgcttttggcaagatagccaattttac
aatgttgatcctgccaatccatgaccatgggagatctttccatcttctga
gatcttctttaatttttttcttcagagacttgaagttcttatcatacaga
tctttcacttccttagttagactcagccaaggtattttatattatttgtg
actattgagaaggtgttctttccctaatttctttctc
gaattcaaacaatgccgtctaatctgtgaatacagtgggagaatataaag
gaatggcagagtagctggtcagtcagtggtggctgtcattataattaacc
actttcagcagcagtagcttggggtggcaaaccaaagctggtgggctgag
tctaggttgtgccatgttcttatatggatacgggcgttttcctgaaccca
gttcagaagccaggagttgaaagaggcagggagacttgcgaagcctggaa
ctagctcctctcttctttagcctaggtccatccaagaatggtccatggac
caggtggcttccccaagatgcttatctctggtctgtgacagggaagctac
agaaaataagattaaacattcgaaaacatctgtaaatatcagccactgaa
agccaacttcattatttgcctcatgaaaaaaagaaaaacaacaaccaaag
actaaaacaagaaaccttgtcattcccccactgaaatggaatctaatatg
ttgtcatgggattttgctgtcccagtgacttagtaagacatgttcacgtg
cttgcagatggaaacatctggaaacctatcaggtgtgaatgacaaaacat
gtcgcaagattgcaagtgacctgggaaggctgatgaacaggcacattaat
aacgtcatgctaatggattttctatgcagataatgggccagccacagttc
actcatcagctaatacagttgtaatgtgttgtttcctatctgagcgagaa
ggcagtcacattcggatattcagatgcctccgacacacacacacacacac
acacacacacacacacacacacacatacacacacacacttacacacacac
acacacaaacacacacaacacacacactcacacacacacacaacacacca
cactcacaccccccaccacacacgaatactcttcccctttgaggtaatgt
attctaaactgattagttatcacccttccccaactttcctggaaatccaa
gcaaataacatttcctatgatgtccctcttgcttttggttggatgtggct
aatataacaaaggaaaagaaaaaaaaaagggcagacagaaacttttttct
tccctctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832186_50832719
seq2: B6Ng01-014C03.b_44_577 (reverse)

seq1  TGAAGACCCAGAAATGAACCCACACATCTATGGTCACTTAATTTTTGACA  50
      |||||||||||| ||||||||||||| |||| ||||||| || |||||||
seq2  TGAAGACCCAGAGATGAACCCACACACCTATAGTCACTTGATCTTTGACA  50

seq1  GGGGAGCTAAAGCCATTCAGTGGAAAAAAGACAGCATTTTCAACAAATGG  100
       |||||| ||| |||| ||||||||||||||||||| |||||||||||||
seq2  AGGGAGCAAAAACCATCCAGTGGAAAAAAGACAGCAGTTTCAACAAATGG  100

seq1  TGCTGGCACAACTGGCGGTTATCATGCAGAAGAATGTGAAATGATTCATT  150
      ||||||||||||||| |||||||||| ||||||||| ||| |||| ||||
seq2  TGCTGGCACAACTGGTGGTTATCATGTAGAAGAATGCGAATTGATCCATT  150

seq1  CCTATCTCCTTGTAGTAATGCCAAATCTAAGTGGATTAAGGAACTCCACT  200
       ||||||||||||| |||   |||||||||||||||||||||||||||| 
seq2  TCTATCTCCTTGTACTAAGATCAAATCTAAGTGGATTAAGGAACTCCACA  200

seq1  TAAAACCAGAGACACTGAAACTTATAGAGGAGAAGGTGGGGAAAAGCCTC  250
      |||||||||||||| ||||||||||||||||||| || ||||||||||||
seq2  TAAAACCAGAGACATTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTC  250

seq1  CAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTG  300
       |||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GAAGATATGGGTACAGGGGGAAAATTCCTGAATAGAACAGCAATGGCTTG  300

seq1  TGCTGTAAGATTGAGAATGGACAAATGGGAACTCATAAAGTTGCAAACCT  350
      |||||||||||  ||||| || | ||| || |||||||| ||||||| ||
seq2  TGCTGTAAGATCAAGAATCGATATATGAGACCTCATAAAATTGCAAAGCT  350

seq1  TCTGTAAGGCAAAAGACACCTTCAATAAGACAAAAAGGCCACCAACAGAT  400
      |||| || |||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGAT  400

seq1  TGGGAGAGGATCTTTACCTATCCTAAATCAAATAGGGGACTAAGATCCAA  450
      ||||| ||||||||||||||||| |||||| |||||||||||| ||||||
seq2  TGGGAAAGGATCTTTACCTATCCCAAATCAGATAGGGGACTAATATCCAA  450

seq1  TATATATAAAGAACTTAAGAAGGTGGATTCCAGAAAATCAAATAACCCCA  500
      ||||||||||||||| ||||||||||| ||| ||||||||||||||||||
seq2  TATATATAAAGAACTCAAGAAGGTGGACTCCGGAAAATCAAATAACCCCA  500

seq1  TTAAAAATGGGGCTCAGAGCTGAACAATGAATTC  534
      |||||||||||||||||| |||||||| ||||||
seq2  TTAAAAATGGGGCTCAGACCTGAACAAAGAATTC  534

seq1: chr10_96215189_96216300
seq2: B6Ng01-014C03.g_66_1175

seq1  GAATTCAAACAATGCCGTCTAATCTGTGAATACAGTGGGAGAATATAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAATGCCGTCTAATCTGTGAATACAGTGGGAGAATATAAAG  50

seq1  GAATGGCAGAGTAGCTGGTCAGTCAGTGGTGGCTGTCATTATAATTAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCAGAGTAGCTGGTCAGTCAGTGGTGGCTGTCATTATAATTAACC  100

seq1  ACTTTCAGCAGCAGTAGCTTGGGGTGGCAAACCAAAGCTGGTGGGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGCAGCAGTAGCTTGGGGTGGCAAACCAAAGCTGGTGGGCTGAG  150

seq1  TCTAGGTTGTGCCATGTTCTTATATGGATACGGGCGTTTTCCTGAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTGTGCCATGTTCTTATATGGATACGGGCGTTTTCCTGAACCCA  200

seq1  GTTCAGAAGCCAGGAGTTGAAAGAGGCAGGGAGACTTGCGAAGCCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGCCAGGAGTTGAAAGAGGCAGGGAGACTTGCGAAGCCTGGAA  250

seq1  CTAGCTCCTCTCTTCTTTAGCCTAGGTCCATCCAAGAATGGTCCATGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTCTCTTCTTTAGCCTAGGTCCATCCAAGAATGGTCCATGGAC  300

seq1  CAGGTGGCTTCCCCAAGATGCTTATCTCTGGTCTGTGACAGGGAAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCTTCCCCAAGATGCTTATCTCTGGTCTGTGACAGGGAAGCTAC  350

seq1  AGAAAATAAGATTAAACATTCGAAAACATCTGTAAATATCAGCCACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAGATTAAACATTCGAAAACATCTGTAAATATCAGCCACTGAA  400

seq1  AGCCAACTTCATTATTTGCCTCATGAAAAAAAGAAAAACAACAACCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTTCATTATTTGCCTCATGAAAAAAAGAAAAACAACAACCAAAG  450

seq1  ACTAAAACAAGAAACCTTGTCATTCCCCCACTGAAATGGAATCTAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACAAGAAACCTTGTCATTCCCCCACTGAAATGGAATCTAATATG  500

seq1  TTGTCATGGGATTTTGCTGTCCCAGTGACTTAGTAAGACATGTTCACGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGGATTTTGCTGTCCCAGTGACTTAGTAAGACATGTTCACGTG  550

seq1  CTTGCAGATGGAAACATCTGGAAACCTATCAGGTGTGAATGACAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGATGGAAACATCTGGAAACCTATCAGGTGTGAATGACAAAACAT  600

seq1  GTCGCAAGATTGCAAGTGACCTGGGAAGGCTGATGAACAGGCACATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAAGATTGCAAGTGACCTGGGAAGGCTGATGAACAGGCACATTAAT  650

seq1  AACGTCATGCTAATGGATTTTCTATGCAGATAATGGGCCAGCCACAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCATGCTAATGGATTTTCTATGCAGATAATGGGCCAGCCACAGTTC  700

seq1  ACTCATCAGCTAATACAGTTGTAATGTGTTGTTTCCTATCTGAGCGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAGCTAATACAGTTGTAATGTGTTGTTTCCTATCTGAGCGAGAA  750

seq1  GGCAGTCACATTCGGATATTACAGATGCCTCCGACACACACACACACACA  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCAGTCACATTCGGATATT-CAGATGCCTCCGACACACACACACACACA  799

seq1  CACACACACACACACACACACACACATACACACACACACATACACACACA  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACACACACACACACACACACACACATACACACACACACTTACACACACA  849

seq1  CACACACAAACACACACAAACACACACACACACACACACACACAAACACA  900
      ||||||||||||||||| ||||||||||| ||||||||||||| ||||||
seq2  CACACACAAACACACAC-AACACACACACTCACACACACACAC-AACACA  897

seq1  CACACACACACACACACACACACACACACGAATACTCATTCCCCTTTGAG  950
      | ||||| ||||| | | ||| ||||||||||||||| ||||||||||||
seq2  C-CACACTCACAC-CCCCCAC-CACACACGAATACTC-TTCCCCTTTGAG  943

seq1  GTAAATGTATTCTAAACTGATAAGTTATCA-CCTTCCCCAACTTTCCTGG  999
      || |||||||||||||||||| |||||||| |||||||||||||||||||
seq2  GT-AATGTATTCTAAACTGATTAGTTATCACCCTTCCCCAACTTTCCTGG  992

seq1  AAATCCAAGCAAATAACATTT-CTATGATGGTCCTCATGCTTTT-GTTGA  1047
      ||||||||||||||||||||| ||||||||  |||| ||||||| |||| 
seq2  AAATCCAAGCAAATAACATTTCCTATGATGTCCCTCTTGCTTTTGGTTGG  1042

seq1  ATGTGCATATTAAAAACAAAGG-AAAGAAAAAAAAAA-GGCAGACAG--A  1093
      |||||  || | | |||||||| |||||||||||||| |||||||||  |
seq2  ATGTGGCTAAT-ATAACAAAGGAAAAGAAAAAAAAAAGGGCAGACAGAAA  1091

seq1  CTTTTTCCTTTCCTCTTTT  1112
      |||||| ||| ||||||||
seq2  CTTTTTTCTTCCCTCTTTT  1110