BAC Information

Click to search

BAC

Clone NameB6Ng01-016K23
Chromosome10 (Build37)
Map Location 9,287,443 - 9,287,975
singlet/doubletsinglet
Overlap genenone
Upstream geneSash1, LOC100039173, EG666625, LOC666636
Downstream geneE130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K23.g
ACCDH850582
length1,023
definitionDH850582|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgctcctctacatcatgcctgactgaataattccatgcttct
actttgaagataattgactgaacatctgaactggtcagccaggcccaatt
aaatgttgtcatataggagtagtctttgttatggtgttttctaacaccag
taaaacactaagacaatggattacacaatatttctatatttcctaaaata
taattgataaacaaagtgtcaattttccttcattaataataatgaattga
tattttaacatataaaagagagcaataacttactgttcaactttctatca
gcaatattttcaaaattacactgtttagcatttctttgaggtgcatactg
ttgtacaatataattaattaacagacactggccagatttgcccttagtgc
atgaatgactttttatacagacacagaatacattcaaaaattcactttat
atatttgtgtgtgtgtgtgtttgtgtgtgtgttggaaaaagaggacatca
attcagtctgggaccctggcacacaggatggtcctgctcacattccttgc
cttgttaaggctgtcagacagcagttctaaacccccagtcaagttgcttt
ggggaggggtatcagatatgctgtttacactaatattcataacagtagca
agttttagaattatgaagtatcaataaaataattttatgactggggggtc
accacaacaagggattggtattaaaatgtcagagcattaggaaggtgtag
aaccactgttctaggggaaacacccctcaccagcatgctgtaaagtgtcc
ctcattgatgccctatgtatttattcttttagcctaatcaagttgacaat
gaaatgaacacctgtagcattagtgagaggatgagccctgcaatgggtcc
tgaatttcagagccttttcaagatgagctcatatacgtatagagacttgg
accctccctgactctttctactttgtccatctatgggaactctctggtgc
cgacagtgtaaaaacaaaacaaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9287443_9287975
seq2: B6Ng01-016K23.g_551_1087 (reverse)

seq1  TTTGTTTTGTTTTTA-ACTGGTCGCCA-CAGAGAGTT-CCATAGACTGGA  47
      ||||||||||||||| ||| |||| || ||||||||| ||||||| ||||
seq2  TTTGTTTTGTTTTTACACT-GTCGGCACCAGAGAGTTCCCATAGA-TGGA  48

seq1  CAAAGTTAGAAGAGTCAGGGAGGGGTCAAGTCTCTATACGTATATGAGCC  97
      ||||||   |||||||||||||||  ||||||||||||||||||||||| 
seq2  CAAAGTAGAAAGAGTCAGGGAGGGTCCAAGTCTCTATACGTATATGAGCT  98

seq1  CATCCTGAAAGGCCTCTGAAATTCA-GACCCATTGCAGGGCTCATCCTCT  146
      |||| ||||| | |||||||||||| ||||||||||||||||||||||||
seq2  CATCTTGAAAAGGCTCTGAAATTCAGGACCCATTGCAGGGCTCATCCTCT  148

seq1  CACTAATGCTACAGTTGTTCATTTCATTGTCAACTTGATTAGGCTAAAAG  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTAATGCTACAGGTGTTCATTTCATTGTCAACTTGATTAGGCTAAAAG  198

seq1  AAATAAATACATAGGGCATCAATGAGGGACACTTTACAGCATGCTGGTGA  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AATAAATACATAGGGCATCAATGAGGGACACTTTACAGCATGCTGGTGA  247

seq1  -GGGTGTTT-CCCTAGAACAGTGGTTCTACACCTTCCTAATGCTCTGACC  294
       |||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  GGGGTGTTTCCCCTAGAACAGTGGTTCTACACCTTCCTAATGCTCTGACA  297

seq1  TTTTAATACCAATCCCTTGTTGTGGTGACCCCCCAGTCATAAAATTATTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACCAATCCCTTGTTGTGGTGACCCCCCAGTCATAAAATTATTT  347

seq1  TATTGATACTTCATAATTCT-AAACTTGCTACTGTTATGAATATTAGTGT  393
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATTGATACTTCATAATTCTAAAACTTGCTACTGTTATGAATATTAGTGT  397

seq1  AAACAGCATATCTGATACCCCTCCCCAAAGCAACTTGACTGGGGGTTTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATATCTGATACCCCTCCCCAAAGCAACTTGACTGGGGGTTTAG  447

seq1  AACTGCTGTCTGACAGCCTTAACAAGGCAAGGAATGTGAGCAGGACCATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTCTGACAGCCTTAACAAGGCAAGGAATGTGAGCAGGACCATC  497

seq1  CTGTGTGCCAGGGTCCCAGACTGAATTGATGTCCTCTTTT  533
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCAGGGTCCCAGACTGAATTGATGTCCTCTTTT  537