BAC Information

Click to search

BAC

Clone NameB6Ng01-021N01
Chromosome10 (Build37)
Map Location 121,186,560 - 121,317,330
singlet/doubletdoublet
Overlap geneBC048403, Srgap1
Upstream geneMsrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik
Downstream geneEG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a, Ppm1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021N01.bB6Ng01-021N01.g
ACCDH854217DH854218
length253698
definitionDH854217|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N01, 5' end.DH854218|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,317,078 - 121,317,330)(121,186,560 - 121,187,255)
sequence
taagtctaatctgatgataaagtcagactatcctgccgagtccacctcag
tggagtcatagtgcatgcactataaatctcctttgataaacttacttcgc
agatgatctctcatcctgccgggtcatttagcttggtccaatcgctcatt
agaaaagtaaaatggctaagaaattgttagcttttggggtgcttataaaa
agataaaggggagaaggactatgttttggtggaggtgtagccaggtgtgg
ggg
gaattcagactgtcatctgccaatttaaaaattttagatttaattacaaa
ataatgggtttcatggtggcatcttcttacataggagtcactttgccctc
tccccctgccctgtgcccatcctcctgctggagggcccttcatgctgtat
ccctgtgctccgtgggccctgcctcgccttggccaccattttgtttttaa
ccatggttaactatgaaggggattagagggtggaattattaatagttctc
tggtaagtgctgtatccctttattaaatgtgtttatctcttgagctttgg
ggttataatgtttatattcatctgtaaaatgggtccatgaacactaaaac
agtttatctgtggacagcggatgtctcagaattgttttttagttgcacac
cctgaaaagaggattccttgttctgatggtagtcacacagttctcagagt
gagtgggtgaagaattagagtcagtgtcagttctccttaattttggacaa
aagttagttactttgattaaaagaaaacccacaaaattcaagctattgcc
taggagaataagatgaaatgctcaagatacaccagagtcctaaaaatgat
ccagcctaggctccgcctcttttctgccccccccccccccgcgcccctgc
cccaccatcccctctcccactgaggtggccctgtcatagcacttgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_121317078_121317330
seq2: B6Ng01-021N01.b_51_303 (reverse)

seq1  CCCCCACACCTGGCTACACCTCCACCAAAACATAGTCCTTCTCCCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACCTGGCTACACCTCCACCAAAACATAGTCCTTCTCCCCTTTA  50

seq1  TCTTTTTATAAGCACCCCAAAAGCTAACAATTTCTTAGCCATTTTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATAAGCACCCCAAAAGCTAACAATTTCTTAGCCATTTTACTTT  100

seq1  TCTAATGAGCGATTGGACCAAGCTAAATGACCCGGCAGGATGAGAGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAGCGATTGGACCAAGCTAAATGACCCGGCAGGATGAGAGATCA  150

seq1  TCTGCGAAGTAAGTTTATCAAAGGAGATTTATAGTGCATGCACTATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGAAGTAAGTTTATCAAAGGAGATTTATAGTGCATGCACTATGACT  200

seq1  CCACTGAGGTGGACTCGGCAGGATAGTCTGACTTTATCATCAGATTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGGTGGACTCGGCAGGATAGTCTGACTTTATCATCAGATTAGAC  250

seq1  TTA  253
      |||
seq2  TTA  253

seq1: chr10_121186560_121187255
seq2: B6Ng01-021N01.g_69_766

seq1  GAATTCAGACTGTCATCTGCCAATTTAAAAATTTTAGATTTAATTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTGTCATCTGCCAATTTAAAAATTTTAGATTTAATTACAAA  50

seq1  ATAATGGGTTTCATGGTGGCATCTTCTTACATAGGAGTCACTTTGCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGTTTCATGGTGGCATCTTCTTACATAGGAGTCACTTTGCCCTC  100

seq1  TCCCCCTGCCCTGTGCCCATCCTCCTGCTGGAGGGCCCTTCATGCTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCCCTGTGCCCATCCTCCTGCTGGAGGGCCCTTCATGCTGTAT  150

seq1  CCCTGTGCTCCGTGGGCCCTGCCTCGCCTTGGCCACCATTTTGTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTCCGTGGGCCCTGCCTCGCCTTGGCCACCATTTTGTTTTTAA  200

seq1  CCATGGTTAACTATGAAGGGGATTAGAGGGTGGAATTATTAATAGTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTAACTATGAAGGGGATTAGAGGGTGGAATTATTAATAGTTCTC  250

seq1  TGGTAAGTGCTGTATCCCTTTATTAAATGTGTTTATCTCTTGAGCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTGCTGTATCCCTTTATTAAATGTGTTTATCTCTTGAGCTTTGG  300

seq1  GGTTATAATGTTTATATTCATCTGTAAAATGGGTCCATGAACACTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAATGTTTATATTCATCTGTAAAATGGGTCCATGAACACTAAAAC  350

seq1  AGTTTATCTGTGGACAGCGGATGTCTCAGAATTGTTTTTTAGTTGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCTGTGGACAGCGGATGTCTCAGAATTGTTTTTTAGTTGCACAC  400

seq1  CCTGAAAAGAGGATTCCTTGTTCTGATGGTAGTCACACAGTTCTCAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGAGGATTCCTTGTTCTGATGGTAGTCACACAGTTCTCAGAGT  450

seq1  GAGTGGGTGAAGAATTAGAGTCAGTGTCAGTTCTCCTTAATTTTGGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTGAAGAATTAGAGTCAGTGTCAGTTCTCCTTAATTTTGGACAA  500

seq1  AAGTTAGTTACTTTGATTAAAAGAAAACCCACAAAATTCAAGCTATTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTTACTTTGATTAAAAGAAAACCCACAAAATTCAAGCTATTGCC  550

seq1  TAGGAGAATAAGATGAAATGCTCAAGATACACCAGAGTCCTAAAAATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAATAAGATGAAATGCTCAAGATACACCAGAGTCCTAAAAATGAT  600

seq1  CCAGCCTAGGCTCCGCCTC-TTTCTGCCCCCCCCCCCCCCGCGCCCCTG-  648
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CCAGCCTAGGCTCCGCCTCTTTTCTGCCCCCCCCCCCCCCGCGCCCCTGC  650

seq1  CCCACCATCCCCTCTCCCACTGAGGTGGCCCTGTCATAGCACTTGCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATCCCCTCTCCCACTGAGGTGGCCCTGTCATAGCACTTGCCT  698