BAC Information

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BAC

Clone NameB6Ng01-023C15
Chromosome10 (Build37)4 (Build37)
Map Location 104,053,656 - 104,054,36350,417,263 - 50,418,283
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023C15.bB6Ng01-023C15.g
ACCDH855159DH855160
length9851,020
definitionDH855159|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C15, 5' end.DH855160|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,656 - 104,054,363)(50,417,263 - 50,418,283)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaattatcagggaaatgcaaattaaaacaactctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgttggcaaggatgtggaaaaagagaaatactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattgggcatagtactactggaggatccagcaacacctctcctgggc
atatatccagaagatgtcccaaccagtaagatggacacatgctccactat
gttcatagcagccttattcataacagccagaagctggaaaacaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttatacaat
ggagtactactcatctattaaaaagaatgaatttatgaaattcctagccc
tcttactttctgataaatataattgtttccacattttttggacctaattc
ttctctgttagttcctttaaagaatcatttcaatccctctaacatatctc
ttacattcatttcattttcctttctgggaacatatgttactttggagaaa
ctatgaatttctagaaagtggctgagtaaaacgtgccatattttaacccc
aaaaattagtaataaaataaaaatgaaatgtgttctcttttctccaaaca
ctcttttttcattttgtttatgaatctactgaattaacaaactaaaaatt
atatccagctaattcttacatgcacacacatttcactctatttgtgaaat
agtattagatattttacaaagtatgtatatcatcatttagctaatcttcc
ttgtctctcttaattatatatatattttctaaatgaaatatacgtatata
catatggttattatgttgtctttcaattcttattt
gaattcacatgaaactaatatgaatatgagtttccatctgacccattaat
ttagactaaaagtcaccgatatttggttccagacataactagtgattatc
catgttattttagagaattaattggtttgtctttcatctgagataggaaa
tagagcatagactcagaccaatgggatagatttgagcaatcagtggaaac
ataaatgaagcagattgagaggagccaggcagttatgattgcttagcaaa
tgttaatttttaatcattatatgttacacaaaaacatatgaaataaaatc
tgggaaatacgcttagataatttaattacatatgtcttgtctttagcaaa
attatgaatgatgcgatcttttataaactcatatagtgaattatgagtta
tcattttcatgctcatatttgaaataccccaggtatgaaaacttatcaaa
agagaaaaaaaaagaattaacatttcacctgatactggagtcaaaattac
aagaataaatgttattgtttcataaatgcacaatagttaatgcttctaaa
attactgatatgattatacatttgatatacaggtattaatttggtctgag
atttatgtaaaagaattttaagttctggttgaaatatctttcatatacac
ttgattaaatttagtcaaagttattcaaactgaatctgctatcaatccag
attcgctacacattttttgtactgtctagttttattacccagatttctca
gaaaattgtataacatcaaattctctccctgagtttgcacataatcattt
tcaatgatttgtcaaacatatatacataaacacacatacagtcacacaca
gactcagagacacaaactaacacagaaattagtcttttccagtaccctgg
agcttttgactctagctgcatatgtattaaaagatggcctagtcggcctt
cactggaaagaaaggcccattggacatgcatacattatatgccccctaca
gggattgccagggcccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053656_104054363
seq2: B6Ng01-023C15.b_43_539 (reverse)

seq1  CTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTTAATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTTTATA  200
                                                      ||
seq2  -----------------------------------------------CTA  3

seq1  AGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTACATTT  250
       |     ||||| |      ||| || |||  | | | || || |    |
seq2  GG-----AATTTCA------TAAATTCATTCTTTTTAATAGATGA---GT  39

seq1  AATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGT  300
      | || ||||||||| |||||||||||||||||||||||| ||||||||||
seq2  AGTA-CTCCATTGTATAAATGTACCACATTTTCTGTATCCATTCCTCTGT  88

seq1  TGAGGGGCATCTGGGTT-CTTTCCAGCTCCTGGCTATTATAAATAAGGCT  349
      |||||||||||||||||  ||||||||| |||||| |||| |||||||||
seq2  TGAGGGGCATCTGGGTTGTTTTCCAGCTTCTGGCTGTTATGAATAAGGCT  138

seq1  GCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTC  399
      |||||||| |||||||||||||||||| |||||| ||||||| |||||||
seq2  GCTATGAACATAGTGGAGCATGTGTCCATCTTACTGGTTGGGACATCTTC  188

seq1  TGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGT  449
      ||||||||||||||| |||||| |||||||||||||| ||||||||||| 
seq2  TGGATATATGCCCAGGAGAGGTGTTGCTGGATCCTCCAGTAGTACTATGC  238

seq1  CCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGC  499
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGC  288

seq1  CTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCG  549
       |||||||||||||||||||||||||| || |||||| |||||||||| |
seq2  TTGCAATCCCACCAACAATGGAGGAGTATTTCTCTTTTTCCACATCCTTG  338

seq1  CCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTG  599
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAACATCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTGGTG  388

seq1  TGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAG  649
      |||||||||||||||| |||||||| ||||||||||||||||| ||||||
seq2  TGAGGTGGAATCTCAGAGTTGTTTTAATTTGCATTTCCCTGATAATTAAG  438

seq1  GATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGG  488

seq1  TGAGAATTC  708
      |||||||||
seq2  TGAGAATTC  497

seq1: chr4_50417263_50418283
seq2: B6Ng01-023C15.g_69_1088

seq1  GAATTCACATGAAACTAATATGAATATGAGTTTCCATCTGACCCATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGAAACTAATATGAATATGAGTTTCCATCTGACCCATTAAT  50

seq1  TTAGACTAAAAGTCACCGATATTTGGTTCCAGACATAACTAGTGATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTAAAAGTCACCGATATTTGGTTCCAGACATAACTAGTGATTATC  100

seq1  CATGTTATTTTAGAGAATTAATTGGTTTGTCTTTCATCTGAGATAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTTTAGAGAATTAATTGGTTTGTCTTTCATCTGAGATAGGAAA  150

seq1  TAGAGCATAGACTCAGACCAATGGGATAGATTTGAGCAATCAGTGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCATAGACTCAGACCAATGGGATAGATTTGAGCAATCAGTGGAAAC  200

seq1  ATAAATGAAGCAGATTGAGAGGAGCCAGGCAGTTATGATTGCTTAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAGCAGATTGAGAGGAGCCAGGCAGTTATGATTGCTTAGCAAA  250

seq1  TGTTAATTTTTAATCATTATATGTTACACAAAAACATATGAAATAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTTTTAATCATTATATGTTACACAAAAACATATGAAATAAAATC  300

seq1  TGGGAAATACGCTTAGATAATTTAATTACATATGTCTTGTCTTTAGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATACGCTTAGATAATTTAATTACATATGTCTTGTCTTTAGCAAA  350

seq1  ATTATGAATGATGCGATCTTTTATAAACTCATATAGTGAATTATGAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAATGATGCGATCTTTTATAAACTCATATAGTGAATTATGAGTTA  400

seq1  TCATTTTCATGCTCATATTTGAAATACCCCAGGTATGAAAACTTATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCATGCTCATATTTGAAATACCCCAGGTATGAAAACTTATCAAA  450

seq1  AGAGAAAAAAAAAGAATTAACATTTCACCTGATACTGGAGTCAAAATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAAAAGAATTAACATTTCACCTGATACTGGAGTCAAAATTAC  500

seq1  AAGAATAAATGTTATTGTTTCATAAATGCACAATAGTTAATGCTTCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAATGTTATTGTTTCATAAATGCACAATAGTTAATGCTTCTAAA  550

seq1  ATTACTGATATGATTATACATTTGATATACAGGTATTAATTTGGTCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGATATGATTATACATTTGATATACAGGTATTAATTTGGTCTGAG  600

seq1  ATTTATGTAAAAGAATTTTAAGTTCTGGTTGAAATATCTTTCATATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTAAAAGAATTTTAAGTTCTGGTTGAAATATCTTTCATATACAC  650

seq1  TTGATTAAATTTAGTCAAAGTTATTCAAACTGAATCTGCTATCAATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAATTTAGTCAAAGTTATTCAAACTGAATCTGCTATCAATCCAG  700

seq1  ATTCGCTACACA-TTTTTGTACTGTCTAGTTTTATTACCCAGATTTCTCA  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCGCTACACATTTTTTGTACTGTCTAGTTTTATTACCCAGATTTCTCA  750

seq1  GAAAATTGTATAACATCAAATTCTCTCCCTGAGTTTGCACATAATCATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTATAACATCAAATTCTCTCCCTGAGTTTGCACATAATCATTT  800

seq1  TCAATGATTTGTCAAACATATATACATAAACACACATACAGTCACACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATTTGTCAAACATATATACATAAACACACATACAGTCACACACA  850

seq1  GACTCAGAGACACAAACTAACACAGAAATTAGTCTTTTCCAGTACCCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAGACACAAACTAACACAGAAATTAGTCTTTTCCAGTACCCTGG  900

seq1  AGCTTTTGACTCTAGCTGCATATGTATAAAAAGATGGCCTAGTCGGCCAT  949
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  AGCTTTTGACTCTAGCTGCATATGTATTAAAAGATGGCCTAGTCGGCCTT  950

seq1  CACTGGAAAGAGAGGCCCATTGGACATGCAAACATTATATGCCCCAGTAC  999
      ||||||||||| |||||||||||||||||| ||||||||||||||  |||
seq2  CACTGGAAAGAAAGGCCCATTGGACATGCATACATTATATGCCCC-CTAC  999

seq1  AGGGGAATGCCAGGGCCAAAAT  1021
      | |||| |||||||||| ||||
seq2  A-GGGATTGCCAGGGCCCAAAT  1020