BAC Information

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BAC

Clone NameB6Ng01-027C19
Chromosome10 (Build37)
Map Location 103,383,025 - 103,556,724
singlet/doubletdoublet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027C19.bB6Ng01-027C19.g
ACCDH857995DH857996
length1,011941
definitionDH857995|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C19, 5' end.DH857996|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,383,025 - 103,384,046)(103,555,483 - 103,556,724)
sequence
gaattctctatgctacattctacctgcctacttaatgcttgcattttcaa
aaatgccttgatttaaaacttcttttgttatattaccatacaactccagc
aactccatgaagctaattccatattggacatatagtatcaaagtaaccta
tattgtgttttcctgggcctcggttactcaaaatttactccagaattaac
tctatcttattgtttcagttgggagctatggtttttgtacaaacagttta
aagtttagattttctttttattaaaagcttgttttcttaataaaatagta
tataagctgtgctagaacacaaatattatttccattatacatttcccctt
taataggttttcatgtttaaattttaatgcttattgttaaacaggaaata
agtttattttataattaatttaaaacttgtatttactaaatcatgtagct
atatgtagagtacgagtgtaggtttctataaaaacatattcgattttaca
gacttaaacataaaaatgaataacaggttccttcttgtatgcaccagttt
accttgggcacaaactctgcagtcagtcccacaacccagaggaagctcca
ctctcagttgctctaacacacataggatcacagaaaaataggaacccagg
atccaaggagtttggtcacaccaggatcttaaagacccaaatgcagctcg
actcccaggaactcttacacactcaggatctcagaatcacataacaccag
aatcacaggatcaaagagatagctggactctgaggagttctgacacaacc
aggatcacaggaagtacaggctccaatcagatagagcaaggacaggtagc
aatagagataatcagatggcaggaggcaagcataagatataagctcagaa
ccaagattacttgcatcatcagaatccattctcccaccatagcaagtccg
tataactgccacaccagaaagcaagattgggtctaaaacacttctcatga
gatgatgagga
gaattctctgggttttcagatgtaacacacgaatcacttagatttcatcc
tatgaaaatagaaataaaagaggaacaggaatggtagaaaggtaacagga
caaaaaaaattccttgtgatttcaaagagcaaataaagatatctgtgaaa
taatagaatgtgcttaacaacaaaggaaacattaaatttaatagcttttc
ctttattacactaattattccaggtaaaaagggaatatgggtttccatct
tagcaggaaaatgctatttgatttaatcataatactttgcatatcttatt
tcatctgagtagcagtagtttagtccaatgacttcaaaggttgtttaggt
catgaatatgaaccagagttctggacctgaaataagaataacaagtctag
atacttaggctattgctcaagaaagtccacagggacaagcctctcttgtc
actgattcatgaacataattcatgagtatcctaaaattaataaatatact
caaggattatttgaatggtaaatgtttctccgaaatttataattctcaat
atagcaataataacaaaaataaagaaataatatactaactggaataaagg
aacaattgttatggtttccaagtattgtaaaagagtaatgatatgtttca
cttctgagtaataagagaacaaaggaatataattatgggcataattataa
ttttaatgtgtaattcaaaatacaaatgaattaccgctgtaccactgtag
agatgtctaataattatgaggtgttatttctttctaaattgtcccacata
ttttagataatgtaggcaaaattggaaagtatttttatcttgaatattaa
attgttttaaatgttatgtggaatttcagtgaccaaggacgttccagaca
taaaacattgtagcctattagtggatgattgagatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103383025_103384046
seq2: B6Ng01-027C19.b_43_1053

seq1  GAATTCTCTATGCTACATTCTACCTGCCTACTTAATGCTTGCATTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGCTACATTCTACCTGCCTACTTAATGCTTGCATTTTCAA  50

seq1  AAATGCCTTGATTTAAAACTTCTTTTGTTATATTACCATACAACTCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTTGATTTAAAACTTCTTTTGTTATATTACCATACAACTCCAGC  100

seq1  AACTCCATGAAGCTAATTCCATATTGGACATATAGTATCAAAGTAACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATGAAGCTAATTCCATATTGGACATATAGTATCAAAGTAACCTA  150

seq1  TATTGTGTTTTCCTGGGCCTCGGTTACTCAAAATTTACTCCAGAATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTTTTCCTGGGCCTCGGTTACTCAAAATTTACTCCAGAATTAAC  200

seq1  TCTATCTTATTGTTTCAGTTGGGAGCTATGGTTTTTGTACAAACAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTATTGTTTCAGTTGGGAGCTATGGTTTTTGTACAAACAGTTTA  250

seq1  AAGTTTAGATTTTCTTTTTATTAAAAGCTTGTTTTCTTAATAAAATAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGATTTTCTTTTTATTAAAAGCTTGTTTTCTTAATAAAATAGTA  300

seq1  TATAAGCTGTGCTAGAACACAAATATTATTTCCATTATACATTTCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTGTGCTAGAACACAAATATTATTTCCATTATACATTTCCCCTT  350

seq1  TAATAGGTTTTCATGTTTAAATTTTAATGCTTATTGTTAAACAGGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGTTTTCATGTTTAAATTTTAATGCTTATTGTTAAACAGGAAATA  400

seq1  AGTTTATTTTATAATTAATTTAAAACTTGTATTTACTAAATCATGTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTTATAATTAATTTAAAACTTGTATTTACTAAATCATGTAGCT  450

seq1  ATATGTAGAGTACGAGTGTAGGTTTCTATAAAAACATATTCGATTTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGAGTACGAGTGTAGGTTTCTATAAAAACATATTCGATTTTACA  500

seq1  GACTTAAACATAAAAATGAATAACAGGTTCCTTCTTGTATGCACCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAACATAAAAATGAATAACAGGTTCCTTCTTGTATGCACCAGTTT  550

seq1  ACCTTGGGCACAAACTCTGCAGTCAGTCCCACAACCCAGAGGAAGCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGCACAAACTCTGCAGTCAGTCCCACAACCCAGAGGAAGCTCCA  600

seq1  CTCTCAGTTGCTCTAACACACATAGGATCACAGAAAAATAGGAACCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTTGCTCTAACACACATAGGATCACAGAAAAATAGGAACCCAGG  650

seq1  ATCCAAGGAGTTTGGTCACACCAGGATCTTAAAGACCCAAATGCAGCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGAGTTTGGTCACACCAGGATCTTAAAGACCCAAATGCAGCTCG  700

seq1  ACTCCCAGGAACTCTTACACACTCAGGATCTCAGAATCACATAACACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGGAACTCTTACACACTCAGGATCTCAGAATCACATAACACCAG  750

seq1  AATCACAGGATCAAAGAGATAGCTGGACTCTGAGGAGTTCTGACACAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGGATCAAAGAGATAGCTGGACTCTGAGGAGTTCTGACACAACC  800

seq1  AGGATCACAGGAAGTACAGGCTCCAATCAGATAGAGCAAGGACAGGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACAGGAAGTACAGGCTCCAATCAGATAGAGCAAGGACAGGTAGC  850

seq1  AATAGAGATAATCAGATGGCAGGAGGCAAGCATAAGAATATAAGCTCAGA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AATAGAGATAATCAGATGGCAGGAGGCAAGCATAAG-ATATAAGCTCAG-  898

seq1  AACCAAGATTACTTGGCATCATCAGAATCCATTTCTCCCACCATAGCAAG  950
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  AACCAAGATTACTT-GCATCATCAGAATCCA-TTCTCCCACCATAGCAAG  946

seq1  TCCCGTATAAACTGCCACACCAGAAAGGCAAGATTTGGGTCTAAAATCAC  1000
      | |||||| ||||||||||||||||| |||||| |||||||||||| |||
seq2  T-CCGTAT-AACTGCCACACCAGAAA-GCAAGA-TTGGGTCTAAAA-CAC  991

seq1  TTCTCATGGAGATGATAGAGGA  1022
      ||||||| |||||||| |||||
seq2  TTCTCAT-GAGATGAT-GAGGA  1011

seq1: chr10_103555483_103556724
seq2: B6Ng01-027C19.g_68_1008 (reverse)

seq1  ATATATATCTCAATAATCTCTTTCTGAACTTTGCATTTGCCCTTATTAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTATTAAACTTTCTTTGGCCAACCTCAAATTTATTATTTTTTGTTTGTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTTCAAGACAGGGCTTCTCTGTGTAATATCACTACCTACCCTGGACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACTCTATAAATAAGGCTACCCTCTAACTCACAGAAACCTGCCTACTCCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCCTCCTTAGTACTGAGATCAAAGGGAAGTGCTATCATGCCCAACCAATT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCATGAATTTTTACACAAACTCAAACACCCTCACATATTTTCCTTAAATA  300
                                                     |||
seq2  -----------------------------------------------ATA  3

seq1  TATATCTCAATTCTTCCACTAATAGGCTACAATGTTTTATTGTCTTGGAC  350
      |||||||||| || ||||||||||||||||||||||||| ||||| | ||
seq2  TATATCTCAA-TCATCCACTAATAGGCTACAATGTTTTA-TGTCTGGAAC  51

seq1  GTCCTTGGTCACTGAAATTCCACATAACATTTAAAAACAATTTAATATTT  400
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  GTCCTTGGTCACTGAAATTCCACATAACATTT-AAAACAATTTAATA-TT  99

seq1  CAAGATAAAAATACTTTCCAATTTTGCCTACATTATCTAAAATATGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAAAATACTTTCCAATTTTGCCTACATTATCTAAAATATGTGGG  149

seq1  ACAATTTAGAAAGAAATAACACCTCATAATTATTAGACATCTCTACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAGAAAGAAATAACACCTCATAATTATTAGACATCTCTACAGTG  199

seq1  GTACAGCGGTAATTCATTTGTATTTTGAATTACACATTAAAATTATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCGGTAATTCATTTGTATTTTGAATTACACATTAAAATTATAATT  249

seq1  ATGCCCATAATTATATTCCTTTGTTCTCTTATTACTCAGAAGTGAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATAATTATATTCCTTTGTTCTCTTATTACTCAGAAGTGAAACAT  299

seq1  ATCATTACTCTTTTACAATACTTGGAAACCATAACAATTGTTCCTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACTCTTTTACAATACTTGGAAACCATAACAATTGTTCCTTTATT  349

seq1  CCAGTTAGTATATTATTTCTTTATTTTTGTTATTATTGCTATATTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGTATATTATTTCTTTATTTTTGTTATTATTGCTATATTGAGAA  399

seq1  TTATAAATTTCGGAGAAACATTTACCATTCAAATAATCCTTGAGTATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATTTCGGAGAAACATTTACCATTCAAATAATCCTTGAGTATATT  449

seq1  TATTAATTTTAGGATACTCATGAATTATGTTCATGAATCAGTGACAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTAGGATACTCATGAATTATGTTCATGAATCAGTGACAAGAG  499

seq1  AGGCTTGTCCCTGTGGACTTTCTTGAGCAATAGCCTAAGTATCTAGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTCCCTGTGGACTTTCTTGAGCAATAGCCTAAGTATCTAGACTT  549

seq1  GTTATTCTTATTTCAGGTCCAGAACTCTGGTTCATATTCATGACCTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTTATTTCAGGTCCAGAACTCTGGTTCATATTCATGACCTAAAC  599

seq1  AACCTTTGAAGTCATTGGACTAAACTACTGCTACTCAGATGAAATAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGAAGTCATTGGACTAAACTACTGCTACTCAGATGAAATAAGAT  649

seq1  ATGCAAAGTATTATGATTAAATCAAATAGCATTTTCCTGCTAAGATGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGTATTATGATTAAATCAAATAGCATTTTCCTGCTAAGATGGAA  699

seq1  ACCCATATTCCCTTTTTACCTGGAATAATTAGTGTAATAAAGGAAAAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATTCCCTTTTTACCTGGAATAATTAGTGTAATAAAGGAAAAGCT  749

seq1  ATTAAATTTAATGTTTCCTTTGTTGTTAAGCACATTCTATTATTTCACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTAATGTTTCCTTTGTTGTTAAGCACATTCTATTATTTCACAG  799

seq1  ATATCTTTATTTGCTCTTTGAAATCACAAGGAATTTTTTTTGTCCTGTTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTATTTGCTCTTTGAAATCACAAGGAATTTTTTTTGTCCTGTTA  849

seq1  CCTTTCTACCATTCCTGTTCCTCTTTTATTTCTATTTTCATAGGATGAAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACCATTCCTGTTCCTCTTTTATTTCTATTTTCATAGGATGAAA  899

seq1  TCTAAGTGATTCGTGTGTTACATCTGAAAACCCAGAGAATTC  1242
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGATTCGTGTGTTACATCTGAAAACCCAGAGAATTC  941