BAC Information

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BAC

Clone NameB6Ng01-029I11
Chromosome10 (Build37)
Map Location 70,796,898 - 70,851,433
singlet/doubletdoublet
Overlap geneZcd1, Ipmk
Upstream gene1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472
Downstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029I11.bB6Ng01-029I11.g
ACCDH859706DH859707
length1,1381,046
definitionDH859706|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I11, 5' end.DH859707|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,850,275 - 70,851,433)(70,796,898 - 70,797,948)
sequence
gaattcattgctttattgcttacatagtgagcactcttagccactcaggg
ttaggagttctcaaaatccattatccaccccctccccaccaggcccttaa
gcagtaactataaaggtgtagctcagtggtagagcatttgcataagtctt
gttttgatccttaatgccacatacacacaaggtaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaacccaccaccgacgacgttggaacactttcgacat
caaatgagcagaatgtcagagccaaactccaaataccacagtaatttaca
acgaaaacacctgtgccatgtttaaatgtcaaggtgctgttttatacaga
gcatgctcctgaacgggcaacctgccaccaatcaccaagagtataggcca
aggaccaagaaacagaaaatcctcacaggacgccaaacctggagcaaaaa
gcaaagttgaggtctggacctgcctaacaatccttcctttccaactaaaa
agggttggctgcccttgagccatatgggagctgcctcctctcacatctct
tgttaatttttgttttcgatggggacgcggttgttaccctgtagtcctgg
ctagcctcaaacctgtggcaaccctactacttcaatggccctagttctct
ctcttgcccatttcctttcccagctctggctatgcagcccacctggtatt
gcaatttccatacccaggcacatttcttaagttttgtttttggtttttga
agacagggtttctctgtgtagccctggctgtcctggaactcactttgtag
accaggctggccacgaactcagaaatccgcctgcctctgcctcccaagtg
ctgggataaaggcgtgcgccaccaccgcccagctccaggcacatttctta
agttttggagacagcacaatctcgcagccagtggcaccacagatgccaac
gaaggcagactcagaatttcctcagcagctcagtacctccatctcagtca
cgttggcattagtctcaatactaagttatgatgcagactacgtagcagtg
accctgctatcttgggactaggcagcagtttaacagtaaacaaaatctca
aagcatgacggcttcctttcagtctatggagcagctta
gaattcaggaacctgtggttcacattccatatcctcaggcctctgtggga
cacggtgacatctgctaagctgttttactggaccacacaacactcagcta
ctagacatgcttcctgaaatcgactgcctaggaaccaggatgggaatgaa
gggagggaggagtcgggcaggagaggatgctagaatccacatgatgtaaa
gctgaaaggggaattcctagggcttagaaaggggaccaggaagaggtgac
agaggacagtgtggggcagcaaacaacagagtatgatgacacagactcat
ggcatgcacagaagtccattgctcagcatgctaactaaaacctaaactgt
ggaccttccctccttgcccgcagggctgcagagagggctcagccggcgat
tgtgtgtgcactgctcctgtagaagagctgagttggaatccaactcccag
cacacatgttaggcatcttcgaaaactcaagctctagggaatgtgatgcc
tctggcctctgcaggcacttgtgctcaggtgaacaacacacacacacaca
cacacacacacacacacacacacacacacacacacgcttctggtctccat
gggcacctgcactcacatgcatacccatacagacacacagacatatacac
acacaattattagtaagtttaaaattaaaaaataattaaatactgtccta
aatatatctcctactaggtatgcgagagccccttccatgtttatgaccca
tgatccatgacagcattccgctgtgttaagtctccatcatactgtgattt
cagaaaatgggacttaatgaaaatctttttctctctttagaccaaaagcc
cagactcatggcttctgggtaagccacttgctggtatgcccggctcccat
gctctgggcccttaaagctttagaaatctgtctcataagttgtgaacagc
agccgggcatggtggcacacgcctttatcccagccagcacttgggagcag
agcagcgatttctgagttcgagctagtctggtctaaaagtgagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_70850275_70851433
seq2: B6Ng01-029I11.b_45_1182 (reverse)

seq1  TAAGCTGCTCCATAGGACTGAAAGGAGAGCCGGTCAATGCTTTGTGAGAT  50
      |||||||||||||| ||||||||||| |||| ||| |||||||| ||   
seq2  TAAGCTGCTCCATA-GACTGAAAGGA-AGCC-GTC-ATGCTTTGAGA---  43

seq1  TTTTGTTTTAACTGGTTAAAACTGGCTGCCTAGGTCCCAAAGATAGCAGT  100
      ||||||||  ||||  | ||||| |||||||| ||||| |||||||||| 
seq2  TTTTGTTT--ACTG--TTAAACT-GCTGCCTA-GTCCC-AAGATAGCAGG  86

seq1  GTCACTGCTACGTAGTCCCTGCATCATAACTAAGTATGGAGACTAAATGC  150
      ||||||||||||||||  ||||||||||||| ||||| |||||| |||||
seq2  GTCACTGCTACGTAGT--CTGCATCATAACTTAGTATTGAGACT-AATGC  133

seq1  CAACGTGAACTGAGAATGGAGGTACTGAGCTGCTGAGGAAATTCTGAGTC  200
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CAACGTG-ACTGAG-ATGGAGGTACTGAGCTGCTGAGGAAATTCTGAGTC  181

seq1  TGGCCTTCGTTGGCATCTGTGGTGCCACTGGCTGCGAGATTGTGCTTGTC  250
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  T-GCCTTCGTTGGCATCTGTGGTGCCACTGGCTGCGAGATTGTGC-TGTC  229

seq1  T-CAAAACTTAAGAAATGTGCCTGGAGCTGGGCGGTGGTGGCGCACGCCT  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACTTAAGAAATGTGCCTGGAGCTGGGCGGTGGTGGCGCACGCCT  279

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGTGG  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-ATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGTGG  328

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGA  378

seq1  AACCCTGTCTTCAAAAACCAAAAACAAAACTTAAGAAATGTGCCTGGGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTTCAAAAACCAAAAACAAAACTTAAGAAATGTGCCTGGGTA  428

seq1  TGGAAATTGCAATACCAGGTGGGCTGCATAGCCAGAGCTGGGAAAGGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTGCAATACCAGGTGGGCTGCATAGCCAGAGCTGGGAAAGGAAA  478

seq1  TGGGCAAGAGAGAGAACTAGGGCCATTGAAGTAGTAGGGTTGCCACAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGAGAGAGAACTAGGGCCATTGAAGTAGTAGGGTTGCCACAGGT  528

seq1  TTGAGGCTAGCCAGGACTACAGGGTAACAACCGCGTCCCCATCGAAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTAGCCAGGACTACAGGGTAACAACCGCGTCCCCATCGAAAACA  578

seq1  AAAATTAACAAGAGATGTGAGAGGAGGCAGCTCCCATATGGCTCAAGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACAAGAGATGTGAGAGGAGGCAGCTCCCATATGGCTCAAGGGC  628

seq1  AGCCAACCCTTCTTAGTTGGAAAGGAAGGATTGTTAGGCAGGTCCAGACC  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCCTTTTTAGTTGGAAAGGAAGGATTGTTAGGCAGGTCCAGACC  678

seq1  TCAACTCTGCTCTCTGCTCCAGGTTTGGCGTCCTGTGAGGATTTTCTGTT  749
      |||||| |||| | ||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTGCTTTTTGCTCCAGGTTTGGCGTCCTGTGAGGATTTTCTGTT  728

seq1  TCTTGGTCCTTGGCCTATACTCTTGGTGATTGGTGGCAGGTTGCCCGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCCTTGGCCTATACTCTTGGTGATTGGTGGCAGGTTGCCCGTTC  778

seq1  AGGAGCATGCTCTGTATAAAACAGCACCTTGACATTTAAACATGGCACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATGCTCTGTATAAAACAGCACCTTGACATTTAAACATGGCACAG  828

seq1  GTGTTTTCGTTGTAAATTACTGTGGTATTTGGAGTTTGGCTCTGACATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCGTTGTAAATTACTGTGGTATTTGGAGTTTGGCTCTGACATTC  878

seq1  TGCTCATTTGATGTCGAAAGTGTTCCAACGTCGTCGGTGGTGGGTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTGATGTCGAAAGTGTTCCAACGTCGTCGGTGGTGGGTTTTTT  928

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTACCTTGTGTGTATGTGGCATTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTACCTTGTGTGTATGTGGCATTAA  978

seq1  GGATCAAAACAAGACTTATGCAAATGCTCTACCACTGAGCTACACCTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAACAAGACTTATGCAAATGCTCTACCACTGAGCTACACCTTTA  1028

seq1  TAGTTACTGCTTAAGGGCCTGGTGGGGAGGGGGTGGATAATGGATTTTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTGCTTAAGGGCCTGGTGGGGAGGGGGTGGATAATGGATTTTGA  1078

seq1  GAACTCCTAACCCTGAGTGGCTAAGAGTGCTCACTATGTAAGCAATAAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTAACCCTGAGTGGCTAAGAGTGCTCACTATGTAAGCAATAAAG  1128

seq1  CAATGAATTC  1159
      ||||||||||
seq2  CAATGAATTC  1138

seq1: chr10_70796898_70797948
seq2: B6Ng01-029I11.g_65_1110

seq1  GAATTCAGGAACCTGTGGTTCACATTCCATATCCTCAGGCCTCTGTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAACCTGTGGTTCACATTCCATATCCTCAGGCCTCTGTGGGA  50

seq1  CACGGTGACATCTGCTAAGCTGTTTTACTGGACCACACAACACTCAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGACATCTGCTAAGCTGTTTTACTGGACCACACAACACTCAGCTA  100

seq1  CTAGACATGCTTCCTGAAATCGACTGCCTAGGAACCAGGATGGGAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATGCTTCCTGAAATCGACTGCCTAGGAACCAGGATGGGAATGAA  150

seq1  GGGAGGGAGGAGTCGGGCAGGAGAGGATGCTAGAATCCACATGATGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGAGTCGGGCAGGAGAGGATGCTAGAATCCACATGATGTAAA  200

seq1  GCTGAAAGGGGAATTCCTAGGGCTTAGAAAGGGGACCAGGAAGAGGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGGGAATTCCTAGGGCTTAGAAAGGGGACCAGGAAGAGGTGAC  250

seq1  AGAGGACAGTGTGGGGCAGCAAACAACAGAGTATGATGACACAGACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAGTGTGGGGCAGCAAACAACAGAGTATGATGACACAGACTCAT  300

seq1  GGCATGCACAGAAGTCCATTGCTCAGCATGCTAACTAAAACCTAAACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCACAGAAGTCCATTGCTCAGCATGCTAACTAAAACCTAAACTGT  350

seq1  GGACCTTCCCTCCTTGCCCGCAGGGCTGCAGAGAGGGCTCAGCCGGCGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTCCCTCCTTGCCCGCAGGGCTGCAGAGAGGGCTCAGCCGGCGAT  400

seq1  TGTGTGTGCACTGCTCCTGTAGAAGAGCTGAGTTGGAATCCAACTCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCACTGCTCCTGTAGAAGAGCTGAGTTGGAATCCAACTCCCAG  450

seq1  CACACATGTTAGGCATCTTCGAAAACTCAAGCTCTAGGGAATGTGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTTAGGCATCTTCGAAAACTCAAGCTCTAGGGAATGTGATGCC  500

seq1  TCTGGCCTCTGCAGGCACTTGTGCTCAGGTGAACAACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTCTGCAGGCACTTGTGCTCAGGTGAACAACACACACACACACA  550

seq1  CACACACACACACACACACACACACACACACACACGCTTCTGGTCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACGCTTCTGGTCTCCAT  600

seq1  GGGCACCTGCACTCACATGCATACCCATACAGACACACAGACATATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTGCACTCACATGCATACCCATACAGACACACAGACATATACAC  650

seq1  ACACAATTATTAGTAAGTTTAAAATTAAAAAATAATTAAATACTGTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTATTAGTAAGTTTAAAATTAAAAAATAATTAAATACTGTCCTA  700

seq1  AATATATCTCCTACTAGGTATGCGAGAGCCCCTTCCATGTTTATGACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTCCTACTAGGTATGCGAGAGCCCCTTCCATGTTTATGACCCA  750

seq1  TGATCCATGACAGCATTCCGCTGTGTTAAGTCTCCATCATACTGTGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATGACAGCATTCCGCTGTGTTAAGTCTCCATCATACTGTGATTT  800

seq1  CAGAAAATGGGACTTAATGAAAATCTTTTTCTCTCTTTAGACCAAAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGGGACTTAATGAAAATCTTTTTCTCTCTTTAGACCAAAAGCC  850

seq1  CAGACTCATGGCTTCT-GGTAAGCCAC-TGCTGGTATGCCCGGCTCCCAT  898
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CAGACTCATGGCTTCTGGGTAAGCCACTTGCTGGTATGCCCGGCTCCCAT  900

seq1  GCTCTGGCCCCTT-AAGCTTTGGAAATCTGTTCTCCATAAG-TGTGAACA  946
      ||||||| ||||| ||||||| |||||||| ||| |||||| ||||||||
seq2  GCTCTGGGCCCTTAAAGCTTTAGAAATCTG-TCT-CATAAGTTGTGAACA  948

seq1  GCAGCCGGGCATGGTGGCACACGCCTTTAATCCCAGCCAGCACTTGGGAG  996
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GCAGCCGGGCATGGTGGCACACGCCTTT-ATCCCAGCCAGCACTTGGGA-  996

seq1  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  1046
      ||||| ||||   ||||||||||||||| || || |||||||| | ||||
seq2  GCAGA-GCAG--CGATTTCTGAGTTCGA-GCTAGTCTGGTCTA-AAAGTG  1041

seq1  AGTTC  1051
      |||||
seq2  AGTTC  1046