BAC Information

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BAC

Clone NameB6Ng01-030K10
Chromosome10 (Build37)
Map Location 93,804,592 - 93,951,361
singlet/doubletdoublet
Overlap geneLOC100041955
Upstream geneLOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472
Downstream geneTmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030K10.bB6Ng01-030K10.g
ACCDH860490DH860491
length1,022978
definitionDH860490|Mus musculus domesticus DNA, BAC clone: B6Ng01-030K10, 5' end.DH860491|Mus musculus domesticus DNA, BAC clone: B6Ng01-030K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,950,336 - 93,951,361)(93,804,592 - 93,805,574)
sequence
gaattccaggactgccagagctaccgcagcaagaccctgtgtcaaaaagc
caaagggtgggtggagaggcaaagaaaaaaagagaggccatcatggggtg
attgggtcatcctgatgcctgtgctctgtaaaccatgcttaggaaaaaca
caatcagtagctgttagcttagaaatctttattcatgtaggtttgtttcc
aacatcaggaaaccaccaaacctcttctacctccccagacctgcctcttc
ctttttacaacacttcatgagcgcgttaggctcccatccttgggtttcac
agccacgggcacagtatatttacatgttgtgacttactctagggagaagg
ttgaagcctccctttattcctccagctgctgaggaaacatcgaattctta
ccacagcatcctttctcacagttggcttggagtgacttcctttaagacgg
gccagtatctgaagatgctgctgccaacactctaggacccagaaccctga
ctctcagtgttcctggcaatctcgggggcttctttcccaggggaccatgc
tcagtgacgtgctgtctgcagagatggctgcagtgtctgaagctgaaggt
ggccacgaacctgcttctaggagtcgttcatatttgaggtgatatatata
tatatacatatataccactttatcttttttttaatactttttattaggta
ttttcctcatttatatttccagtgctatcccaaaagtcccccataccctc
ccacccactcccctacccacccactcccacttttttggccctggcgtccc
cctgtactggggcatataaagtttgcaagtccaatggggcctctttccag
tgatggccgactaggccatcttttgatacatatgcagctagagtcagagg
tccgggatatgggttagtcaatatgttgttctacctatagggttgcagat
cctttagttcttgggtactttctctagctccttcattgggggcctgttga
tcatcaatagctgactgataca
gaattcttaggtcccatataggctcctgcatctggatgcttactccccag
tcagagatgctgtttggggagcccagggaacttttgggagggagagcctt
gctggatgatgtgtgtcccaggaggcaggctgtaaggttttatagtctcg
gctcacttccggctcccttgttctgctgtctgagcggggatgaagaagcc
agctttttcctcctgatgtagtgctttctctgcctggtgctgtgcctccc
ctgctataatagactcagcttacatcagggtattttatatcacagcaaca
gaaatgtagctaagacagttcccagctttccatgagtcctagggaccaaa
ccctgatccttatgcacacgcagcaagaggtttccccaccaagccatccc
ctgggtcctctgttttgtttttgctttgttcctgacacccaagcgatgaa
aacacatgttttggatgagaagcaaacgaatcagattatgccccagtaac
cgtgaggcaggaaagggagagatctgagcctagtcctatccatttgttct
gggaatgcagagaagtgtgaccactctcaagggtcgcagggaggagtgta
accactctggaaaggtcccaaggctaggaggcactggtctggttccaggt
ttggcatggccatcagaattgaatcacggtctgtgatttggatacacggt
ttgagttgtttagaaaatggtgaggttggctcccaacatggcttccatgc
cgattttttcctcagtctgaagcaaaatcatcaaaaaggaaacaaatatg
tggttagcattgcacggtgctaaatgtgttcaatttaacagactctcctg
ttttctaatattaggtcctctctgctttttatgtttcatccttttattaa
ataataatagtagatggtggttggattgctttatttttttatgactttag
ttggcaaaaaaaaaggtggagatattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93950336_93951361
seq2: B6Ng01-030K10.b_45_1065 (reverse)

seq1  GTATACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTA  50
      |||| |||||||||||| ||| |||||   ||||||||||| ||||||||
seq2  GTAT-CAGTCAGCTATT-GAT-GATCAACAGGCCCCCAATGAAGGAGCTA  47

seq1  GAGAAAGTACCCAAGGAACTAAAGGGATCTGCAACCCTATAGGTAGAACA  100
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  GAGAAAGTACCCAA-GAACTAAA-GGATCTGCAACCCTATAGGTAGAACA  95

seq1  ACATTATGAACTAACCAGTATCCCGGACCTCTTGACTCTAGCTGCATATG  150
      ||| |||  |||||||  ||||||||||||| ||||||||||||||||||
seq2  ACA-TATTGACTAACCCATATCCCGGACCTC-TGACTCTAGCTGCATATG  143

seq1  TATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGG-CCCATTGGAC  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGGCCCCATTGGAC  193

seq1  TTGCAAACTTTATATGCCCCAGTACAGGGGGACGCCAGGGCC-AAAAAGT  248
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGCAAACTTTATATGCCCCAGTACAGGGGGACGCCAGGGCCAAAAAAGT  243

seq1  GGGAGTGGGTGGGTAGGGGAGTGGGTGGGAGGGTATGGGGGACTTTTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGGTGGGTAGGGGAGTGGGTGGGAGGGTATGGGGGACTTTTGGG  293

seq1  ATAGCACTGGAAATATAAATGAGGAAAATACCTAATAAAAAGTATTAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTGGAAATATAAATGAGGAAAATACCTAATAAAAAGTATTAAAA  343

seq1  AAAAGATAAAGTGGTATATATGTATATATATATATATCACCTCAAATATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAAGTGGTATATATGTATATATATATATATCACCTCAAATATG  393

seq1  AACGACTCCTAGAAGCAGGTTCGTGGCCACCTTCAGCTTCAGACACTGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTCCTAGAAGCAGGTTCGTGGCCACCTTCAGCTTCAGACACTGCA  443

seq1  GCCATCTCTGCAGACAGCACGTCACTGAGCATGGTCCCCTGGGAAAGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTGCAGACAGCACGTCACTGAGCATGGTCCCCTGGGAAAGAAG  493

seq1  CCCCCGAGATTGCCAGGAACACTGAGAGTCAGGGTTCTGGGTCCTAGAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGAGATTGCCAGGAACACTGAGAGTCAGGGTTCTGGGTCCTAGAGT  543

seq1  GTTGGCAGCAGCATCTTCAGATACTGGCCCGTCTTAAAGGAAGTCACTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGCAGCATCTTCAGATACTGGCCCGTCTTAAAGGAAGTCACTCC  593

seq1  AAGCCAACTGTGAGAAAGGATGCTGTGGTAAGAATTCGATGTTTCCTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACTGTGAGAAAGGATGCTGTGGTAAGAATTCGATGTTTCCTCAG  643

seq1  CAGCTGGAGGAATAAAGGGAGGCTTCAACCTTCTCCCTAGAGTAAGTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAGGAATAAAGGGAGGCTTCAACCTTCTCCCTAGAGTAAGTCAC  693

seq1  AACATGTAAATATACTGTGCCCGTGGCTGTGAAACCCAAGGATGGGAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAAATATACTGTGCCCGTGGCTGTGAAACCCAAGGATGGGAGCC  743

seq1  TAACGCGCTCATGAAGTGTTGTAAAAAGGAAGAGGCAGGTCTGGGGAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCGCTCATGAAGTGTTGTAAAAAGGAAGAGGCAGGTCTGGGGAGGT  793

seq1  AGAAGAGGTTTGGTGGTTTCCTGATGTTGGAAACAAACCTACATGAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGTTTGGTGGTTTCCTGATGTTGGAAACAAACCTACATGAATAA  843

seq1  AGATTTCTAAGCTAACAGCTACTGATTGTGTTTTTCCTAAGCATGGTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTAAGCTAACAGCTACTGATTGTGTTTTTCCTAAGCATGGTTTA  893

seq1  CAGAGCACAGGCATCAGGATGACCCAATCACCCCATGATGGCCTCTCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACAGGCATCAGGATGACCCAATCACCCCATGATGGCCTCTCTTT  943

seq1  TTTTCTTTGCCTCTCCACCCACCCTTTGGCTTTTTGACACAGGGTCTTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGCCTCTCCACCCACCCTTTGGCTTTTTGACACAGGGTCTTGC  993

seq1  TGCGGTAGCTCTGGCAGTCCTGGAATTC  1026
      ||||||||||||||||||||||||||||
seq2  TGCGGTAGCTCTGGCAGTCCTGGAATTC  1021

seq1: chr10_93804592_93805574
seq2: B6Ng01-030K10.g_69_1046

seq1  GAATTCTTAGGTCCCATATAGGCTCCTGCATCTGGATGCTTACTCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGTCCCATATAGGCTCCTGCATCTGGATGCTTACTCCCCAG  50

seq1  TCAGAGATGCTGTTTGGGGAGCCCAGGGAACTTTTGGGAGGGAGAGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGCTGTTTGGGGAGCCCAGGGAACTTTTGGGAGGGAGAGCCTT  100

seq1  GCTGGATGATGTGTGTCCCAGGAGGCAGGCTGTAAGGTTTTATAGTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGATGTGTGTCCCAGGAGGCAGGCTGTAAGGTTTTATAGTCTCG  150

seq1  GCTCACTTCCGGCTCCCTTGTTCTGCTGTCTGAGCGGGGATGAAGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTCCGGCTCCCTTGTTCTGCTGTCTGAGCGGGGATGAAGAAGCC  200

seq1  AGCTTTTTCCTCCTGATGTAGTGCTTTCTCTGCCTGGTGCTGTGCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTCCTCCTGATGTAGTGCTTTCTCTGCCTGGTGCTGTGCCTCCC  250

seq1  CTGCTATAATAGACTCAGCTTACATCAGGGTATTTTATATCACAGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAATAGACTCAGCTTACATCAGGGTATTTTATATCACAGCAACA  300

seq1  GAAATGTAGCTAAGACAGTTCCCAGCTTTCCATGAGTCCTAGGGACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGCTAAGACAGTTCCCAGCTTTCCATGAGTCCTAGGGACCAAA  350

seq1  CCCTGATCCTTATGCACACGCAGCAAGAGGTTTCCCCACCAAGCCATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCCTTATGCACACGCAGCAAGAGGTTTCCCCACCAAGCCATCCC  400

seq1  CTGGGTCCTCTGTTTTGTTTTTGCTTTGTTCCTGACACCCAAGCGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTCTGTTTTGTTTTTGCTTTGTTCCTGACACCCAAGCGATGAA  450

seq1  AACACATGTTTTGGATGAGAAGCAAACGAATCAGATTATGCCCCAGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGTTTTGGATGAGAAGCAAACGAATCAGATTATGCCCCAGTAAC  500

seq1  CGTGAGGCAGGAAAGGGAGAGATCTGAGCCTAGTCCTATCCATTTGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGCAGGAAAGGGAGAGATCTGAGCCTAGTCCTATCCATTTGTTCT  550

seq1  GGGAATGCAGAGAAGTGTGACCACTCTCAAGGGTCGCAGGGAGGAGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCAGAGAAGTGTGACCACTCTCAAGGGTCGCAGGGAGGAGTGTA  600

seq1  ACCACTCTGGAAAGGTCCCAAGGCTAGGAGGCACTGGTCTGGTTCCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTGGAAAGGTCCCAAGGCTAGGAGGCACTGGTCTGGTTCCAGGT  650

seq1  TTGGCATGGCCATCAGAATTGAATCACGGTCTGTGATTTGGATACACGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGGCCATCAGAATTGAATCACGGTCTGTGATTTGGATACACGGT  700

seq1  TTGAGTTGTTTAGAAAATGGTGAGGTTGGCTCCCAACATGGCTTCCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGTTTAGAAAATGGTGAGGTTGGCTCCCAACATGGCTTCCATGC  750

seq1  CGATTTTTTCCTCAGTCTGAAGCAAAAATCATC-AAAAGGAAACAAATAT  799
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CGATTTTTTCCTCAGTCTGAAGC-AAAATCATCAAAAAGGAAACAAATAT  799

seq1  GTGGTTAGCATTGCACGGTGCTAAATGTGTTCAATTTAACAGACTCTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGCATTGCACGGTGCTAAATGTGTTCAATTTAACAGACTCTCCT  849

seq1  GTTTTCTAATATTAGGTCCTCTCTGCTTTTTATGTTTCATCCTTTTATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAATATTAGGTCCTCTCTGCTTTTTATGTTTCATCCTTTTATTA  899

seq1  AATAATAATAAGTAGATGGTGGTTGGATTGCTTTTATTTTTTTTAATGAC  949
      ||||||||| ||||||||||||||||||||| |||||||||||  |||||
seq2  AATAATAAT-AGTAGATGGTGGTTGGATTGC-TTTATTTTTTT--ATGAC  945

seq1  TTTAGTTGGCAAAAAAAAAAGGTGGAGATATTGT  983
      |||||||||| |||||||||||||||||||||||
seq2  TTTAGTTGGC-AAAAAAAAAGGTGGAGATATTGT  978