BAC Information

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BAC

Clone NameB6Ng01-032J19
Chromosome10 (Build37)
Map Location 56,099,402 - 56,171,952
singlet/doubletdoublet
Overlap geneGja1
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032J19.bB6Ng01-032J19.g
ACCDH861893DH861894
length662767
definitionDH861893|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J19, 5' end.DH861894|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,099,402 - 56,100,063)(56,170,856 - 56,171,952)
sequence
gaattctgaattactggaatacatctatctccccggtgtgtgaaaacttt
gcacactcagaaacgggtgcagtggctatctgtcttttgtctggtgttcc
aggtggtagtggtttgatattccactgtctaaacacattatatatatata
tatatatatatataatcttcaacattgccccatcattctttgaggttggg
attcttctattgctgactttacacgggaaatttggttctaaagccagcca
cgagaagggaaggctgcatttccttccgcataaggagcagagcttggttg
cttagctgtttccaaatcccgcagagagaaggaatggcacatactctgcc
tttattacggtattgcagaggtgtagctcttgtgaactgtagaaactttg
tataccccgagggaagggaactataggaaagtcacccactgattaatacc
tgagactccacctttcctgttgttctaacttcccttcaagattcggtttg
acttttgatgtgttgaggcttatcctgctcactcgggagagagagaaaaa
tcctcttgggtgtatcattaacgtctacattaagtgtagatactcccaag
cttaaaagttcccagctgcttctaagtgggaaggtacagatgtgcgtgtg
tgtgtgtgtgtg
gaattcaagaccacatcattttatctatcattatctctgtaaaaggtcag
ccacagattatatcctggcttttactggtacggattccttgccacttcat
ggtaagctgccctatgaacctctgggagcaaactccatgcagcaataagt
aacagtagctctctttcatggctttgccctcagaggtctcccaagctatt
catttagttatgacgttgtccattgtctcagccgagtttcaaagccttct
agaacatactaaacaaggtaattaaggagaggccaactctgtgatatgtc
cccaaagtaaataatactcagccatgtagatttgggttcttttcgagatg
taaaatagctctcaactttgtgaaatagaaaaacagaggtccaggggtgt
ggtacttcctggttctaggataacttttcctcattataaactaggtcaaa
ggcacatcataaagttgagtcaggagacaaccttttgtcctaatcttctg
tcccattacaaaattaatagtgattaatcttgtctcgacaacactatttc
acccggtgagtgactccctcctcctagggacagttttggtttttccctac
tgttttgtctctctaactggctcccaagtcccaccctctgcacttgcctc
cacttgcctcatccttagctaccatcaccacttacatctctgctgcccca
tctctcctctctgcacagtctctcgaataccatggggtttttttggtttg
gtttggtttttttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56099402_56100063
seq2: B6Ng01-032J19.b_45_706

seq1  GAATTCTGAATTACTGGAATACATCTATCTCCCCGGTGTGTGAAAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATTACTGGAATACATCTATCTCCCCGGTGTGTGAAAACTTT  50

seq1  GCACACTCAGAAACGGGTGCAGTGGCTATCTGTCTTTTGTCTGGTGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCAGAAACGGGTGCAGTGGCTATCTGTCTTTTGTCTGGTGTTCC  100

seq1  AGGTGGTAGTGGTTTGATATTCCACTGTCTAAACACATTATATATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTAGTGGTTTGATATTCCACTGTCTAAACACATTATATATATATA  150

seq1  TATATATATATATAATCTTCAACATTGCCCCATCATTCTTTGAGGTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATAATCTTCAACATTGCCCCATCATTCTTTGAGGTTGGG  200

seq1  ATTCTTCTATTGCTGACTTTACACGGGAAATTTGGTTCTAAAGCCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTATTGCTGACTTTACACGGGAAATTTGGTTCTAAAGCCAGCCA  250

seq1  CGAGAAGGGAAGGCTGCATTTCCTTCCGCATAAGGAGCAGAGCTTGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGGGAAGGCTGCATTTCCTTCCGCATAAGGAGCAGAGCTTGGTTG  300

seq1  CTTAGCTGTTTCCAAATCCCGCAGAGAGAAGGAATGGCACATACTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGTTTCCAAATCCCGCAGAGAGAAGGAATGGCACATACTCTGCC  350

seq1  TTTATTACGGTATTGCAGAGGTGTAGCTCTTGTGAACTGTAGAAACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACGGTATTGCAGAGGTGTAGCTCTTGTGAACTGTAGAAACTTTG  400

seq1  TATACCCCGAGGGAAGGGAACTATAGGAAAGTCACCCACTGATTAATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCCGAGGGAAGGGAACTATAGGAAAGTCACCCACTGATTAATACC  450

seq1  TGAGACTCCACCTTTCCTGTTGTTCTAACTTCCCTTCAAGATTCGGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCCACCTTTCCTGTTGTTCTAACTTCCCTTCAAGATTCGGTTTG  500

seq1  ACTTTTGATGTGTTGAGGCTTATCCTGCTCACTCGGGAGAGAGAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATGTGTTGAGGCTTATCCTGCTCACTCGGGAGAGAGAGAAAAA  550

seq1  TCCTCTTGGGTGTATCATTAACGTCTACATTAAGTGTAGATACTCCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGGGTGTATCATTAACGTCTACATTAAGTGTAGATACTCCCAAG  600

seq1  CTTAAAAGTTCCCAGCTGCTTCTAAGTGGGAAGGTACAGATGTGCGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGTTCCCAGCTGCTTCTAAGTGGGAAGGTACAGATGTGCGTGTG  650

seq1  TGTGTGTGTGTG  662
      ||||||||||||
seq2  TGTGTGTGTGTG  662

seq1: chr10_56170856_56171952
seq2: B6Ng01-032J19.g_68_834 (reverse)

seq1  AACCAAACTGGAGTCTGGTGAGAAGGCTTAGTGGCTAAAGGTACTTGCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACAACGTGAATTGGATCCTTAGAACCATTGTGATGGAAGGAGTCATCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCCAGCTCTGGATGTATAAAATATTTCTGCAGTGTGGGGTGATAGTTGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCGATCTGGATGTGCCAGCCCATGTTCTATTTGAGGAGCCTGCCGGTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTTAACAGCCATTGGAATACAAAAGTCGTTGTTATGTGCATAGTTAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCATTTCTCATTGGTATAAATCTATGCATATTGGTACAAAAATTGAAATA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AATATGGTTACTCTTAAAAAAAAAAACAAAAAACCAAAAAACCAAACCAA  350
                                    || | |||||||||||||||
seq2  ------------------------------AACCAAAAAAACCAAACCAA  20

seq1  ACCAAAAAAACCCCATGGTATTCGAGAGACTGTGCAGAGAGGAGAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAACCCCATGGTATTCGAGAGACTGTGCAGAGAGGAGAGATGG  70

seq1  GGCAGCAGAGATGTAAGTGGTGATGGTAGCTAAGGATGAGGCAAGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGAGATGTAAGTGGTGATGGTAGCTAAGGATGAGGCAAGTGGAG  120

seq1  GCAAGTGCAGAGGGTGGGACTTGGGAGCCAGTTAGAGAGACAAAACAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCAGAGGGTGGGACTTGGGAGCCAGTTAGAGAGACAAAACAGTA  170

seq1  GGGAAAAACCAAAACTGTCCCTAGGAGGAGGGAGTCACTCACCGGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAACCAAAACTGTCCCTAGGAGGAGGGAGTCACTCACCGGGTGAA  220

seq1  ATAGTGTTGTCGAGACAAGATTAATCACTATTAATTTTGTAATGGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTGTCGAGACAAGATTAATCACTATTAATTTTGTAATGGGACAG  270

seq1  AAGATTAGGACAAAAGGTTGTCTCCTGACTCAACTTTATGATGTGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGGACAAAAGGTTGTCTCCTGACTCAACTTTATGATGTGCCTTT  320

seq1  GACCTAGTTTATAATGAGGAAAAGTTATCCTAGAACCAGGAAGTACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGTTTATAATGAGGAAAAGTTATCCTAGAACCAGGAAGTACCACA  370

seq1  CCCCTGGACCTCTGTTTTTCTATTTCACAAAGTTGAGAGCTATTTTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGACCTCTGTTTTTCTATTTCACAAAGTTGAGAGCTATTTTACAT  420

seq1  CTCGAAAAGAACCCAAATCTACATGGCTGAGTATTATTTACTTTGGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAAGAACCCAAATCTACATGGCTGAGTATTATTTACTTTGGGGAC  470

seq1  ATATCACAGAGTTGGCCTCTCCTTAATTACCTTGTTTAGTATGTTCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGAGTTGGCCTCTCCTTAATTACCTTGTTTAGTATGTTCTAGA  520

seq1  AGGCTTTGAAACTCGGCTGAGACAATGGACAACGTCATAACTAAATGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGAAACTCGGCTGAGACAATGGACAACGTCATAACTAAATGAAT  570

seq1  AGCTTGGGAGACCTCTGAGGGCAAAGCCATGAAAGAGAGCTACTGTTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGAGACCTCTGAGGGCAAAGCCATGAAAGAGAGCTACTGTTACT  620

seq1  TATTGCTGCATGGAGTTTGCTCCCAGAGGTTCATAGGGCAGCTTACCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGCATGGAGTTTGCTCCCAGAGGTTCATAGGGCAGCTTACCATG  670

seq1  AAGTGGCAAGGAATCCGTACCAGTAAAAGCCAGGATATAATCTGTGGCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAAGGAATCCGTACCAGTAAAAGCCAGGATATAATCTGTGGCTG  720

seq1  ACCTTTTACAGAGATAATGATAGATAAAATGATGTGGTCTTGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTACAGAGATAATGATAGATAAAATGATGTGGTCTTGAATTC  767