BAC Information

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BAC

Clone NameB6Ng01-035L23
Chromosome4 (Build37)10 (Build37)
Map Location 140,863,274 - 140,863,462127,700,487 - 127,701,428
singlet/doubletsingletsinglet
Overlap geneEpha2
Upstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19
Downstream geneGm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035L23.bB6Ng01-035L23.g
ACCDH864135DH864136
length429937
definitionDH864135|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L23, 5' end.DH864136|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,863,274 - 140,863,462)(127,700,487 - 127,701,428)
sequence
gaattccagaagagcagaaaactagtctttaaaaataaaaaggaagaggc
tggagagatgactcagcagttaagagcactgactgttcttccagaggtcc
agagatcaattcccagcaaccacatggtggctcacagccatctataatgg
gatccgaagccctcttctgatgtgtctgaagacagctagtgtacttaaaa
taaataaataaatatttccaaaaaaaaaaaaaaaaaaaaacagttaagag
caccagctgatcttccaaaggacccaggttcaattcccagccccatataa
cagatcacaaccgcctgtaactcaagttccacaagatccaacaccctcac
acagacaaacaggaagaccaaacaccaatgcaaatgaaatttttaaaaaa
aaatcaataaaaaagaaaaaaaggacatg
gaattcctcaggaggaacatgagaaactgagcatatggggtgtgagggac
acattcagttacagggtaagaggaggtatgttaccataggtagccctctg
aagtcctcagtcaggccatgtgaggtctgtaaacttacttgaggaagtga
gaaatcggggcagaggtgttgtgcatgctgtggcttgagcacggtataag
agaaagagctaggtgtgagtgctcagaattataattccagcaactgcaga
gtctaggctgcgtaggctgctgtcgagcctgttatgaggaggaggagggg
gaagaaacattagcatcttttgggcccacagaagagaccattccaagaga
cagaagacaaccctctgcaagtgaaggagtgtggctgaggagaagcactg
ggtttgctttatgttttcttgtcacgttgaggacaggccccaggatgcct
tgagttgtaggcaaggatagaagccatacagatgacatcttaattttgta
ccaacctcaaaaaagtgtgagaaataaatctgcaacgtgagaactaccca
ttttgtgggatgccaactttatatgcttggtgggtttcttcttctggcct
tataaatctatacaatctgaaattctactttcttcattctaagaaaaact
cttacaattagtttttttttctcacttccctttttttcagtttatttaaa
aaatccagggtctgtgttgatagctgctgggagtggctaaatcaacttga
cacctgtccatatggcttctccatacacaggagaaaatattcagccatat
ttcaattttttattttaaacagtagcagactagtccttcttgggtatagg
ctgcagtggagccaagtctgagtgattttgagcatcattttttttctctt
ttctctcccctcttcttttttaagatttatatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140863274_140863462
seq2: B6Ng01-035L23.b_91_453 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTATTGATTTTTTTTTAAAAATTTCATTTGCATTGGTGTTTGGTCTTCCT  50

seq1  --------------------------------------------------  0
                                                        
seq2  GTTTGTCTGTGTGAGGGTGTTGGATCTTGTGGAACTTGAGTTACAGGCGG  100

seq1  --------------------------------------------------  0
                                                        
seq2  TTGTGATCTGTTATATGGGGCTGGGAATTGAACCTGGGTCCTTTGGAAGA  150

seq1  --------------------------TTATTGATTTTTTAAAAAAAAATT  24
                                || ||  ||||||    ||| |||
seq2  TCAGCTGGTGCTCTTAACTGTTTTTTTTTTTTTTTTTTTTTGGAAATATT  200

seq1  TATTGTATTTATGTGTGTGCACTGTCACTCTCTTCAGACACACCAGAAGA  74
      |||| ||||||| | |  | ||  |  || |||||||||||| |||||||
seq2  TATT-TATTTAT-TTTAAGTACACTAGCTGTCTTCAGACACATCAGAAGA  248

seq1  GGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG  124
      |||| ||||||||||||| |||||| ||||||||||||||||||||||||
seq2  GGGCTTCGGATCCCATTATAGATGGCTGTGAGCCACCATGTGGTTGCTGG  298

seq1  GGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGA  174
      | ||||| ||| |||||||||||||| |||||||||||||||||  ||||
seq2  GAATTGATCTCTGGACCTCTGGAAGAACAGTCAGTGCTCTTAACTGCTGA  348

seq1  GCCATCTCTCCAGCC  189
      | |||||||||||||
seq2  GTCATCTCTCCAGCC  363

seq1: chr10_127700487_127701428
seq2: B6Ng01-035L23.g_68_1004

seq1  GAATTCCTCAGGAGGAACATGAGAAACTGAGCATATGGGGTGTGAGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGAGGAACATGAGAAACTGAGCATATGGGGTGTGAGGGAC  50

seq1  ACATTCAGTTACAGGGTAAGAGGAGGTATGTTACCATAGGTAGCCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGTTACAGGGTAAGAGGAGGTATGTTACCATAGGTAGCCCTCTG  100

seq1  AAGTCCTCAGTCAGGCCATGTGAGGTCTGTAAACTTACTTGAGGAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCAGTCAGGCCATGTGAGGTCTGTAAACTTACTTGAGGAAGTGA  150

seq1  GAAATCGGGGCAGAGGTGTTGTGCATGCTGTGGCTTGAGCACGGTATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCGGGGCAGAGGTGTTGTGCATGCTGTGGCTTGAGCACGGTATAAG  200

seq1  AGAAAGAGCTAGGTGTGAGTGCTCAGAATTATAATTCCAGCAACTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGCTAGGTGTGAGTGCTCAGAATTATAATTCCAGCAACTGCAGA  250

seq1  GTCTAGGCTGCGTAGGCTGCTGTCGAGCCTGTTATGAGGAGGAGGAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGCTGCGTAGGCTGCTGTCGAGCCTGTTATGAGGAGGAGGAGGGG  300

seq1  GAAGAAACATTAGCATCTTTTGGGCCCACAGAAGAGACCATTCCAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACATTAGCATCTTTTGGGCCCACAGAAGAGACCATTCCAAGAGA  350

seq1  CAGAAGACAACCCTCTGCAAGTGAAGGAGTGTGGCTGAGGAGAAGCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAACCCTCTGCAAGTGAAGGAGTGTGGCTGAGGAGAAGCACTG  400

seq1  GGTTTGCTTTATGTTTTCTTGTCACGTTGAGGACAGGCCCCAGGATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTTTATGTTTTCTTGTCACGTTGAGGACAGGCCCCAGGATGCCT  450

seq1  TGAGTTGTAGGCAAGGATAGAAGCCATACAGATGACATCTTAATTTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTAGGCAAGGATAGAAGCCATACAGATGACATCTTAATTTTGTA  500

seq1  CCAACCTCAAAAAAGTGTGAGAAATAAATCTGCAACGTGAGAACTACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCAAAAAAGTGTGAGAAATAAATCTGCAACGTGAGAACTACCCA  550

seq1  TTTTGTGGGATGCCAACTTTATATGCTTGGTGGGTTTCTTCTTCTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGGATGCCAACTTTATATGCTTGGTGGGTTTCTTCTTCTGGCCT  600

seq1  TATAAATCTATACAATCTGAAATTCTAC-TTCTTCATTCTAAGAAAAACT  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATAAATCTATACAATCTGAAATTCTACTTTCTTCATTCTAAGAAAAACT  650

seq1  CTTACAATTAG-TTTTTTTTCTCACTT-CCTTTTTTTCAGTTTATTTAAA  697
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  CTTACAATTAGTTTTTTTTTCTCACTTCCCTTTTTTTCAGTTTATTTAAA  700

seq1  AAATCCAGGGTCTGTGTTGATAGCTGCT-GGAGTGGCTAAAATCAACTTG  746
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  AAATCCAGGGTCTGTGTTGATAGCTGCTGGGAGTGGCT-AAATCAACTTG  749

seq1  ACACCTGTCCATATGGCTTCTCCATACACAAGAAGAGATATTCAGCCATA  796
      |||||||||||||||||||||||||||||| ||  | |||||||||||||
seq2  ACACCTGTCCATATGGCTTCTCCATACACAGGAGAAAATATTCAGCCATA  799

seq1  TTTCAATTTTTATTTTAAAACAGTAGCAGACTAGTCTCTCTTGGGTATAG  846
      |||||||||||  ||| |||||||||||||||||||  ||||||||||||
seq2  TTTCAATTTTTTATTTTAAACAGTAGCAGACTAGTCCTTCTTGGGTATAG  849

seq1  GCTGCAGT-GAGCCAAGGTCTGAGGTTGATATTTGAGCATCATTTTTTTT  895
      |||||||| ||||||| |||||||  |||| |||||||||||||||||||
seq2  GCTGCAGTGGAGCCAA-GTCTGAG--TGAT-TTTGAGCATCATTTTTTTT  895

seq1  CTTCTTTTTCTCCTTCTCCTTCTTCCTTTTTTTAAGATT--TATTTATT  942
      ||  ||| ||||     || |||||  ||||||||||||  ||||||||
seq2  CTCTTTTCTCTC-----CCCTCTTC--TTTTTTAAGATTTATATTTATT  937