BAC Information

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BAC

Clone NameB6Ng01-036N23
Chromosome10 (Build37)18 (Build37)
Map Location 122,573,993 - 122,575,05856,823,191 - 56,823,708
singlet/doubletsingletsinglet
Overlap geneUsp15
Upstream geneLOC668275, Avpr1a, Ppm1h, D630033A02Rik, Mon2
Downstream geneLOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N23.bB6Ng01-036N23.g
ACCDH864912DH864913
length1,064767
definitionDH864912|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N23, 5' end.DH864913|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,573,993 - 122,575,058)(56,823,191 - 56,823,708)
sequence
gaattcagtttttgtttttccaaaaaaccaaaacaaaacaaaaaacatta
ttacttcataggaaaagtcttatgagagaaatgaaatgtaattccagctt
tttacacttacagtactatcactgaccactaaagatagtaacatgtaagt
tgccatgattatcccaccaccttcctggaatcgccatgctttggcaggct
ctgtttgcatcccctgcattttagcttcatctcctctctgttcgtttccg
ctcatgtacagttctcccctgttttctaaatggagcatgtgggtaggatg
acccatctccttgaaaggagtagtctgtccttcctcctgttttctcatca
ctgtttcagtcagctaagcagcatgttgggccaacacatggatgtcaacc
acactgcctaattcaaactggagctcttccgcttttaacctgtatcacct
tgagtaaagaaacttggtagtttcttcatctgtaaagataaggagcttta
agatgtgttggacacgctgtgggctgtctgccagctaaggccattcagtg
cattctcagatgtctatctatgtactgacatatctcagatctatcgcttt
caactttaacatacaatgtaaagtgcgtatttgtgccaagagagcttaaa
tgactgagacttcacatgtctgccaaagctgatcctgatctggactgttt
ggtggttgtgggtccctgtctgcccctgtactggaactgtctgtgtagaa
gcagttagactgccgggagagtcttaactttagacttttagtccatattc
tatcaaccaaagatctttgtggctgaaaggataatttcgtgctttaaatg
tgaagaaatgtgcacatatgtatatttaatgagggacttgttctttagag
caccgtgtttaatagcagcagtctaagcagaagtttcagtcatccaaaga
cttttatgagtttaagatagctctataaaactaaaattgatgggttctgt
gtataatttcgatcaacagcaacaacacaagaatttaagaaccttgcttt
ctttctttctctcc
gaattcatataaataaaataaataaatcttaaaaaaaaaaagaagtgcgc
tgcagtcaacaacgctgagaggacttggagatctgaagagcactgacatc
agacatggagattgagagtttatagcttgccagctggtttctggtcttgc
ctttgcccagtatttcctcactatgatggtttggaacagtaatgtgtacc
ttgtgccactgcacaagatgtgatggtggaaaatatgcatctttcttttt
atagaggattcagttaagagaccgcatgagtctcagaagagactgtgcac
tttggatttttaaacaagtttgagactgttaagggctatggggacttttg
aagttgagctggatgtatttttgcattatgttatggctacaagcctatgg
aggccaaggagtggaatgtggtggtttaaataggtttgtaccccacagac
tcatgtgtttgaatgctaggcccacagggagtggcactattaggaggtgt
ggccttgttggaggaagtgtatcattatggagacaggctttgaggtctca
tataagctcaaagatagttttattggaatgtatgaggtcaaaacgaattt
tcataattaatactattacgatttattaattttcagtgtaatgaaaactt
tgatctgatagcataaaagcaatagcattacaacagtaaatgccttggca
ggattcatggaaaacaaaagcaaacttgtactagcatcaatacatcttca
ctgtcatacataaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_122573993_122575058
seq2: B6Ng01-036N23.b_45_1108 (reverse)

seq1  GGAGA-AAAG-AAGAAA-CCAGGTTCTTAAATTCTTGTTGTGTTGCTGTT  47
      ||||| |||| |||||| | ||||||||||||||||||  |||||||| |
seq2  GGAGAGAAAGAAAGAAAGCAAGGTTCTTAAATTCTTGTGTTGTTGCTG-T  49

seq1  TGATCTGAAATTATTACACAGAACCCATCATTTTAAGTTTTTATATGAGC  97
      ||||| ||||||| |||||||||||||||| ||| || ||||||| ||| 
seq2  TGATC-GAAATTA-TACACAGAACCCATCAATTTTAG-TTTTATA-GAG-  94

seq1  CTATCTTAAACTCATAAAAGTCTTT-GATGACTGAAACATCTGCTTAGAC  146
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CTATCTTAAACTCATAAAAGTCTTTGGATGACTGAAACTTCTGCTTAGAC  144

seq1  TGCTGCTATTAAACACGGTGCTCTAAAGAACAAGTCCCTCCTTAAATATA  196
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTGCTATTAAACACGGTGCTCTAAAGAACAAGTCCCTCATTAAATATA  194

seq1  CATATGTGCACATTTCTTCACATTTAAAGCACGAAATTATCCTTTCAGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGCACATTTCTTCACATTTAAAGCACGAAATTATCCTTTCAGCC  244

seq1  ACAAAGATCTTTGGTTGATAGAATATGGACTAAAAGTCTAAAGTTAAGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATCTTTGGTTGATAGAATATGGACTAAAAGTCTAAAGTTAAGAC  294

seq1  TCTCCCGGCAGTCTAACTGCTTCTACACAGACAGTTCCAGTACAGGGGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGGCAGTCTAACTGCTTCTACACAGACAGTTCCAGTACAGGGGCA  344

seq1  GACAGGGACCCACAACCACCAAACAGTCCAGATCAGGATCAGCTTTGGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGACCCACAACCACCAAACAGTCCAGATCAGGATCAGCTTTGGCA  394

seq1  GACATGTGAAGTCTCAGTCATTTAAGCTCTCTTGGCACAAATACGCACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGAAGTCTCAGTCATTTAAGCTCTCTTGGCACAAATACGCACTT  444

seq1  TACATTGTATGTTAAAGTTGAAAGCGATAGATCTGAGATATGTCAGTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTATGTTAAAGTTGAAAGCGATAGATCTGAGATATGTCAGTACA  494

seq1  TAGATAGACATCTGAGAATGCACTGAATGGCCTTAGCTGGCAGACAGCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGACATCTGAGAATGCACTGAATGGCCTTAGCTGGCAGACAGCCC  544

seq1  ACAGCGTGTCCAACACATCTTAAAGCTCCTTATCTTTACAGATGAAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTGTCCAACACATCTTAAAGCTCCTTATCTTTACAGATGAAGAAA  594

seq1  CTACCAAGTTTCTTTACTCAAGGTGATACAGGTTAAAAGCGGAAGAGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGTTTCTTTACTCAAGGTGATACAGGTTAAAAGCGGAAGAGCTC  644

seq1  CAGTTTGAATTAGGCAGTGTGGTTGACATCCATGTGTTGGCCCAACATGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGAATTAGGCAGTGTGGTTGACATCCATGTGTTGGCCCAACATGC  694

seq1  TGCTTAGCTGACTGAAACAGTGATGAGAAAACAGGAGGAAGGACAGACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCTGACTGAAACAGTGATGAGAAAACAGGAGGAAGGACAGACTA  744

seq1  CTCCTTTCAAGGAGATGGGTCATCCTACCCACATGCTCCATTTAGAAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCAAGGAGATGGGTCATCCTACCCACATGCTCCATTTAGAAAAC  794

seq1  AGGGGAGAACTGTACATGAGCGGAAACGAACAGAGAGGAGATGAAGCTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAACTGTACATGAGCGGAAACGAACAGAGAGGAGATGAAGCTAA  844

seq1  AATGCAGGGGATGCAAACAGAGCCTGCCAAAGCATGGCGATTCCAGGAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGGGATGCAAACAGAGCCTGCCAAAGCATGGCGATTCCAGGAAG  894

seq1  GTGGTGGGATAATCATGGCAACTTACATGTTACTATCTTTAGTGGTCAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGATAATCATGGCAACTTACATGTTACTATCTTTAGTGGTCAGT  944

seq1  GATAGTACTGTAAGTGTAAAAAGCTGGAATTACATTTCATTTCTCTCATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTACTGTAAGTGTAAAAAGCTGGAATTACATTTCATTTCTCTCATA  994

seq1  AGACTTTTCCTATGAAGTAATAATGTTTTTTGTTTTGTTTTGGTTTTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCCTATGAAGTAATAATGTTTTTTGTTTTGTTTTGGTTTTTTG  1044

seq1  GAAAAACAAAAACTGAATTC  1066
      ||||||||||||||||||||
seq2  GAAAAACAAAAACTGAATTC  1064

seq1: chr18_56823191_56823708
seq2: B6Ng01-036N23.g_77_574 (reverse)

seq1  AACAAGGCCACACCTCCAAATGGTGCCACTCCC--TGGTCCAGGATATAC  48
      ||||||||||||||||| ||| |||||||||||  ||| ||  |  || |
seq2  AACAAGGCCACACCTCCTAATAGTGCCACTCCCTGTGGGCCTAG-CATTC  49

seq1  AAATCATCACAGATGCCCTGGGGGTAAAGGAACTTGCCACCCAACCCACC  98
      |||    ||||   | |   |||||| |  |||   | |   || |||||
seq2  AAA----CACATGAGTCTGTGGGGTACA--AAC---CTATTTAAACCACC  90

seq1  A-ACTCCA--GGTTGCACCCCA-------GGAGCTATACAGTTGAAGGAG  138
      | | ||||    |||  | |||       | ||| ||| |  | | | | 
seq2  ACATTCCACTCCTTGGCCTCCATAGGCTTGTAGCCATA-ACATAATGCAA  139

seq1  AGAACTGACTCCCCCCAACTTGACTTCTGCATACATGATCCTGCAGGTGT  188
      |      | | |  ||| ||  |||||     | | |  ||   |     
seq2  A------AATACATCCAGCTCAACTTC-----AAAAGTCCCCATA-----  173

seq1  GTGCTCACACACAATCAATAAACACATG-TTAAAGTTTAAAAGT--AAAA  235
      |  || | |||   ||||     || || |||||  |  |||||  | | 
seq2  GCCCTTA-ACAGTCTCAA-----ACTTGTTTAAAAATCCAAAGTGCACAG  217

seq1  GAAAATCTGAG---------------TAACTTAAGC--TAAGAAAAATTT  268
           ||||||               ||||| || |    | |||||   
seq2  TCTCTTCTGAGACTCATGCGGTCTCTTAACTGAATCCTCTATAAAAAGAA  267

seq1  GGAAGGGTATGTGGTGGCTTGTGGACTCCCTGGGAA--GGCTGAAGATAC  316
       || |  ||| |     | |    ||  | || | |  |||  ||| |||
seq2  AGATGCATATTTTCCACCAT---CACATCTTGTGCAGTGGCACAAGGTAC  314

seq1  AAACT-CAG---CATACAAGAACACTGACAACTTAAAAACTGGATATTGG  362
      | | | | |   || || |  | | |||      ||| |||||  |    
seq2  ACATTACTGTTCCAAACCATCATAGTGA----GGAAATACTGGGCA--AA  358

seq1  GGCTGGA-GAGATGGCTCAGCAGTTGAGAACACTTGTTGCTTTTGCAGAG  411
      |||  ||  |||      | ||| ||  ||        |||       | 
seq2  GGCAAGACCAGA-----AACCAGCTGGCAA--------GCT-------AT  388

seq1  GACCTGGACTCAATACCCAGGACCCAT-AAAGGGGGCTTACAACCATCCA  460
       | ||   ||||||  ||| | |  ||   || |  |||   | |  | |
seq2  AAACT---CTCAATCTCCATGTCTGATGTCAGTGCTCTTCAGATCTCCAA  435

seq1  TAACTCTAGTTCCTGGTATCTG----ACAC-TCTTTTTTTCCTTAAGATT  505
         ||||      || |  |||     ||| |||||||||  ||||||||
seq2  GTCCTCTCAGCGTTGTTGACTGCAGCGCACTTCTTTTTTTTTTTAAGATT  485

seq1  TATTTATTTTATT  518
      |||||||||||||
seq2  TATTTATTTTATT  498