BAC Information

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BAC

Clone NameB6Ng01-039J07
Chromosome10 (Build37)
Map Location 104,053,552 - 104,054,363
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039J07.bB6Ng01-039J07.g
ACCDH866812DH866813
length951,027
definitionDH866812|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J07, 5' end.DH866813|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttggtcctatgaaggctcaatagatgccccagtataggggaac
tgagggcagggaggcgggtgtgggtgggtggaagaacacccttat
gaattctcagctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaacattgagat
tccacctcataccagtcagaatggctaagattaaaaattcaggttggcag
cagatgctgtcgaggatgtggagaaagagaaacactcctccattgttggt
gggattgcaagcttgtaaaaccactctggaattcagtctggcggttcctc
agaaaattggacataattcaccagaggatccagcaatacccctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattgaaattcttgggcaaatgaatgtatctggagg
ataccatcctgagtgaggtaacccaatcacaaaagaagttactagatatg
cactcactgataagtggatattagcccagaaacgtagaataactccttta
tcttgtagacgctcccctcccgccacaagcagaagtgcaaagactaggta
caaagtgccagagtgcccatgtgcagggccacatctgagcccctaaggtg
cttggctgtcaccttcatttctctctgagcaggctcatgtgaggcaggtt
ggccttctgaggcaggaggactgaccgtctctgcctccaccatgctcttg
ttgggttattgttttattctgtggttgttttgttcccagcctggctttgg
gacctcctaagtgatggactgcctaattagtgttgtgagatgtcatttaa
catcatgttttggggaatttgctttgtcacacccagaccttcagtttgag
acagtttcagtcccagcttaacctaaagtcagctgcttctgccatgcttt
tcagcttccttgtctgcgacctgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053552_104054363
seq2: B6Ng01-039J07.g_66_648 (reverse)

seq1  GTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGCGCGAGTTCC  50
      |||||||||||||||||||||||||||||||| |||||   |  | ||| 
seq2  GTTTCTGGGCTAATATCCACTTATCAGTGAGTGCATATCTAGTAACTTCT  50

seq1  TTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCAT  100
      ||||||||||||||||| ||||||||||| ||  |||||| | ||| |||
seq2  TTTGTGATTGGGTTACCTCACTCAGGATGGTATCCTCCAGATACATTCAT  100

seq1  TTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATT  150
      ||||| | |||||||                 ||||||            
seq2  TTGCCCAAGAATTTC-----------------AATAGC------------  121

seq1  TAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTT  200
                                                        
seq2  --------------------------------------------------  121

seq1  AATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAAT  250
                                                        
seq2  --------------------------------------------------  121

seq1  TAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTT  300
                                                        
seq2  --------------------------------------------------  121

seq1  TATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTAC  350
        | ||||                             |||          
seq2  --TGAGTA-----------------------------GTA----------  130

seq1  ATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCT  400
               |||||||||||||||||||||||||||||||||| ||||||
seq2  ---------CTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCT  171

seq1  CTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAG  450
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAG  221

seq1  GCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATC  500
      ||||||||||| ||||||||||||||||||||||||||||||||  ||||
seq2  GCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGAACATC  271

seq1  TTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTA  550
      |||||||||||||||||| || ||||||||||||||||| ||| | | ||
seq2  TTCTGGATATATGCCCAGGAGGGGTATTGCTGGATCCTCTGGT-GAATTA  320

seq1  TGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACA  600
      ||||||||||||||| |||||||||||| || ||||||||||||| ||||
seq2  TGTCCAATTTTCTGAGGAACCGCCAGACTGAATTCCAGAGTGGTTTTACA  370

seq1  AGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  650
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCTTGCAATCCCACCAACAATGGAGGAGTGTTTCTCTTTCTCCACATCC  420

seq1  TCGCCAGCATCTGCTGTC-ACCTGAATTTTTGATCTTAGCCATTCTGACT  699
      ||| |||||||||||| | |||||||||||| ||||||||||||||||||
seq2  TCGACAGCATCTGCTGCCAACCTGAATTTTTAATCTTAGCCATTCTGACT  470

seq1  GGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGAT  749
      ||| |||||||||||||||  |||||||||||||||||||||||||||||
seq2  GGTATGAGGTGGAATCTCAATGTTGTTTTGATTTGCATTTCCCTGATGAT  520

seq1  TAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCT  799
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  TAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCGGTATTCCT  570

seq1  CAGGTGAGAATTC  812
      ||| |||||||||
seq2  CAGCTGAGAATTC  583