BAC Information

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BAC

Clone NameB6Ng01-039N21
Chromosome10 (Build37)
Map Location 61,903,657 - 62,023,733
singlet/doubletdoublet
Overlap geneSupv3l1, Vps26a, Srgn, 2510003E04Rik
Upstream geneEif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1
Downstream geneDdx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N21.bB6Ng01-039N21.g
ACCDH867008DH867009
length1,1591,079
definitionDH867008|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N21, 5' end.DH867009|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,903,657 - 61,904,830)(62,022,639 - 62,023,733)
sequence
gaattcagagatccacctgccactgatcaacgatacgattaaagcactgg
gattctgtttcatccaagacaaaggaaaacaagcacagcaaggtttgctg
gaaaggggtaagtatttagtcacccattttctcctagatttttcactttt
caccataaagtcctataacttaagcttaaccatactgaaacccccaatcc
tagttttctgaacagcagatacatacaaggagttgcaacattgcacatct
ccacagtgcaagagacatgggtggcttgtttcccctcaggctccactgtc
agccgctcttcacctgtcaccaagtcacacggcacaccctggaatgataa
aaagaaacccagtcttatctctgacttaaaaatggtaacaaaaagccaag
gtctgaaaaggattcattccattactatcaaatgtattcaaataaccgaa
tccacgactcccaatgtttttacttccacactcctcacacacagctagct
actctgttgtatacgttagataaatctgaagaaatgttcaatcagaacct
tcagcagagagagaaactgtagtggttcctctgtatcttgagcagagtct
catgtagcccaggctggcctgaaactaactatataactaatgatgatttg
aactcccgatcgtccaattccaaagttctgggattatagacatgcaccac
gtggcccagccaacagctctggctctggatttggtcagtttcctttgcag
tggtgggcagtgaacccagggctttgcttaagcccggcaagtgctctatc
actgagctttctctcgccacattaccatctttcagtttctctctgcacat
ttcagcactaatggcgttagttaacccagcggacatgaactgctgccata
ctcaagaacaacactatgagtggagcctgagactaaaggaccctggtcta
accccccacccccagaagagcaacatcagcggtatggtatactggggtac
ccagtcaggaatgcaggctttccagatgaaggctgttttgtgctcatctg
agaaagtctagtccacagtacctacagtatttaaaaaataaaagttacag
gagacaaagactgactgaggatctggaatagcataactagaaatgtcaca
gccatgtgg
gaattcagagccacccttggctttgtaacaagttccaggccagattggcc
tacaggaacccttacctcaagagacttgaaaggctgtgggtgcagtaagg
agaagatgtctggtgcagggtaggtggcacgtgggtaggacctcggcact
caggctgtgagagccagcctgggtctccctgggcacctgaaaacagatgc
gcgcacacacacacacacacacacacacacaagtaaaaataaatctttgg
tgagaaaaaaggttttcagatctcagtgggcctgtggtgtggctccttag
aggaacactcacctaacatgttcagaaaagatcataacctgcttcagcta
tgatgcactgtcattattttttgatttttatatatatttgatttagttga
tttactttagtgtgtgtatccacgtacatgcatgtgcatgtgtgagaggt
caaaggacaacttgaaggacactgttcttctaccatgagggtcctggaga
acaatctcaggttgcaggatccgtggcagataccaccatgtagtatgtgc
tggcctggaactcactgtggaacccaggcctcagccttgctgggacggct
tagctaagagaactgaaattacagatgtgagccagccacctcgtgtcaga
tcttatccttaggttggcaatttgtttgtaaccatcagtgtacaccaggc
tggctttgaactcacagaggtctgcctgcctctgcctcctgattttttgt
tcttgtatttcctttattttatgaatatgagaagtatacgagcatgtctg
tgtactatatgtctgctggtgtccaagcaagtgaaaagagggcattggat
tgtctggattttaatgatggttggtggcctcggtgctgggagctgaacct
gagtcttctgcatagagccatctctcagcccactctttgttctttgagat
gggcttgctgtgtacttgcagccagctttgaacgtgctgttagtccagct
agtcattctgcagtcctcctgctctgctctaacggctgggattcgggtgt
tccagagctcactgtggttctctcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61903657_61904830
seq2: B6Ng01-039N21.b_48_1206

seq1  GAATTCAGAGATCCACCTGCCACTGATCAACGATACGATTAAAGCACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCCACCTGCCACTGATCAACGATACGATTAAAGCACTGG  50

seq1  GATTCTGTTTCATCCAAGACAAAGGAAAACAAGCACAGCAAGGTTTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTTTCATCCAAGACAAAGGAAAACAAGCACAGCAAGGTTTGCTG  100

seq1  GAAAGGGGTAAGTATTTAGTCACCCATTTTCTCCTAGATTTTTCACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGTAAGTATTTAGTCACCCATTTTCTCCTAGATTTTTCACTTTT  150

seq1  CACCATAAAGTCCTATAACTTAAGCTTAACCATACTGAAACCCCCAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAAGTCCTATAACTTAAGCTTAACCATACTGAAACCCCCAATCC  200

seq1  TAGTTTTCTGAACAGCAGATACATACAAGGAGTTGCAACATTGCACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTGAACAGCAGATACATACAAGGAGTTGCAACATTGCACATCT  250

seq1  CCACAGTGCAAGAGACATGGGTGGCTTGTTTCCCCTCAGGCTCCACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGCAAGAGACATGGGTGGCTTGTTTCCCCTCAGGCTCCACTGTC  300

seq1  AGCCGCTCTTCACCTGTCACCAAGTCACACGGCACACCCTGGAATGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTCTTCACCTGTCACCAAGTCACACGGCACACCCTGGAATGATAA  350

seq1  AAAGAAACCCAGTCTTATCTCTGACTTAAAAATGGTAACAAAAAGCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCCAGTCTTATCTCTGACTTAAAAATGGTAACAAAAAGCCAAG  400

seq1  GTCTGAAAAGGATTCATTCCATTACTATCAAATGTATTCAAATAACCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAAAGGATTCATTCCATTACTATCAAATGTATTCAAATAACCGAA  450

seq1  TCCACGACTCCCAATGTTTTTACTTCCACACTCCTCACACACAGCTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGACTCCCAATGTTTTTACTTCCACACTCCTCACACACAGCTAGCT  500

seq1  ACTCTGTTGTATACGTTAGATAAATCTGAAGAAATGTTCAATCAGAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTGTATACGTTAGATAAATCTGAAGAAATGTTCAATCAGAACCT  550

seq1  TCAGCAGAGAGAGAAACTGTAGTGGTTCCTCTGTATCTTGAGCAGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGAGAGAAACTGTAGTGGTTCCTCTGTATCTTGAGCAGAGTCT  600

seq1  CATGTAGCCCAGGCTGGCCTGAAACTAACTATATAACTAATGATGATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCCCAGGCTGGCCTGAAACTAACTATATAACTAATGATGATTTG  650

seq1  AACTCCCGATCGTCCAATTCCAAAGTTCTGGGATTATAGACATGCACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCGATCGTCCAATTCCAAAGTTCTGGGATTATAGACATGCACCAC  700

seq1  GTGGCCCAGCCAACAGCTCTGGCTCTGGATTTGGTCAGTTTCCTTTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCAGCCAACAGCTCTGGCTCTGGATTTGGTCAGTTTCCTTTGCAG  750

seq1  TGGTGGGCAGTGAACCCAGGGCTTTGCTTAAGCCCGGCAAGTGCTCTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGCAGTGAACCCAGGGCTTTGCTTAAGCCCGGCAAGTGCTCTATC  800

seq1  ACTGAGCTTTCTCTCGCCACATTACCATCTTTCAGTTTCTCTCTGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTTTCTCTCGCCACATTACCATCTTTCAGTTTCTCTCTGCACAT  850

seq1  TTCAGCACTAATGGCGTTAGTTAACCCAGCGGACATGAACTGCTGCCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACTAATGGCGTTAGTTAACCCAGCGGACATGAACTGCTGCCATA  900

seq1  CTCAAGAACAACACTATGAGTGGAGCCTGAGACTAAAAGGACCCTGGTCT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCAAGAACAACACTATGAGTGGAGCCTGAGACT-AAAGGACCCTGGTCT  949

seq1  AACCCCCCACCCCCCAGAAGAAGCAACATCAGCGGTATGGTATACTGGGG  1000
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  AACCCCCCA-CCCCCAGAAG-AGCAACATCAGCGGTATGGTATACTGGGG  997

seq1  TACTCAGTCAGGAATGCAAGGCTTTCCAGAATGAAGGCTGTTTTGTGCTC  1050
      ||| ||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TACCCAGTCAGGAATGC-AGGCTTTCCAG-ATGAAGGCTGTTTTGTGCTC  1045

seq1  AATCTGAGAAAGTCTAGTCCACAAGTAACCTACAGTATTTAAAAAATAAA  1100
       ||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  -ATCTGAGAAAGTCTAGTCCAC-AGT-ACCTACAGTATTTAAAAAATAAA  1092

seq1  AAGGTTACAGGAGACAAAGACTGACTGAGGAATTCTGAGATTAGCATAAA  1150
      |  ||||||||||||||||||||||||||||  |||| || |||||| ||
seq2  A--GTTACAGGAGACAAAGACTGACTGAGGA--TCTG-GAATAGCAT-AA  1136

seq1  CTAGAAAATGGTCACAG-CATGTGG  1174
      |||||||   ||||||| |||||||
seq2  CTAGAAA--TGTCACAGCCATGTGG  1159

seq1: chr10_62022639_62023733
seq2: B6Ng01-039N21.g_67_1145 (reverse)

seq1  AAGAGGAGA-AACCACAGTGAAGCTCTGGAACACACCTGTAATCCCAGCC  49
      |||| |||| |||||||||| ||||||||||||| |    ||||||||||
seq2  AAGAAGAGAGAACCACAGTG-AGCTCTGGAACACCC---GAATCCCAGCC  46

seq1  GTTAGGAGGCAGAGGCAGGAGGACTGCAGAATGGACTAGCCTGGACTAAA  99
      |||||   ||||| |||||||||||||||||| |||||| ||||||| ||
seq2  GTTAG--AGCAGA-GCAGGAGGACTGCAGAAT-GACTAG-CTGGACT-AA  90

seq1  CAGCACGTTTCAAAGCTGGCTGCAGGTACACAGCAAGGCCCAATCTCAAA  149
      ||||||| |||||||||||||||| ||||||||||||  || ||||||||
seq2  CAGCACG-TTCAAAGCTGGCTGCAAGTACACAGCAAG--CCCATCTCAAA  137

seq1  GAACAAAGAGTTGGGGCTGGAGAGATGGCTCTATTGCAGAAGACTCAGGT  199
      |||||||||||  ||||| |||||||||||||| ||||||||||||||||
seq2  GAACAAAGAGT--GGGCT-GAGAGATGGCTCTA-TGCAGAAGACTCAGGT  183

seq1  TCAGCTCCCAGCACCGAGGCCACCAACCATCATTAAAATCCAGACAATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCCAGCACCGAGGCCACCAACCATCATTAAAATCCAGACAATCC  233

seq1  AATGCCCTCTTTTCACTTGCTTGGACACCAGCAGACATATAGTACACAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTCTTTTCACTTGCTTGGACACCAGCAGACATATAGTACACAGA  283

seq1  CATGCTCGTATACTTCTCATATTCATAAAATAAAGGAAATACAAGAACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCGTATACTTCTCATATTCATAAAATAAAGGAAATACAAGAACAA  333

seq1  AAAATCAGGAGGCAGAGGCAGGCAGACCTCTGTGAGTTCAAAGCCAGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGGAGGCAGAGGCAGGCAGACCTCTGTGAGTTCAAAGCCAGCCT  383

seq1  GGTGTACACTGATGGTTACAAACAAATTGCCAACCTAAGGATAAGATCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACACTGATGGTTACAAACAAATTGCCAACCTAAGGATAAGATCTG  433

seq1  ACACGAGGTGGCTGGCTCACATCTGTAATTTCAGTTCTCTTAGCTAAGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGGTGGCTGGCTCACATCTGTAATTTCAGTTCTCTTAGCTAAGCC  483

seq1  GTCCCAGCAAGGCTGAGGCCTGGGTTCCACAGTGAGTTCCAGGCCAGCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCAAGGCTGAGGCCTGGGTTCCACAGTGAGTTCCAGGCCAGCAC  533

seq1  ATACTACATGGTGGTATCTGCCACGGATCCTGCAACCTGAGATTGTTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACATGGTGGTATCTGCCACGGATCCTGCAACCTGAGATTGTTCTC  583

seq1  CAGGACCCTCATGGTAGAAGAACAGTGTCCTTCAAGTTGTCCTTTGACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCTCATGGTAGAAGAACAGTGTCCTTCAAGTTGTCCTTTGACCT  633

seq1  CTCACACATGCACATGCATGTACGTGGATACACACACTAAAGTAAATCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACATGCACATGCATGTACGTGGATACACACACTAAAGTAAATCAA  683

seq1  CTAAATCAAATATATATAAAAATCAAAAAATAATGACAGTGCATCATAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAAATATATATAAAAATCAAAAAATAATGACAGTGCATCATAGC  733

seq1  TGAAGCAGGTTATGATCTTTTCTGAACATGTTAGGTGAGTGTTCCTCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGTTATGATCTTTTCTGAACATGTTAGGTGAGTGTTCCTCTAA  783

seq1  GGAGCCACACCACAGGCCCACTGAGATCTGAAAACCTTTTTTCTCACCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACACCACAGGCCCACTGAGATCTGAAAACCTTTTTTCTCACCAA  833

seq1  AGATTTATTTTTACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTTTACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCAT  883

seq1  CTGTTTTCAGGTGCCCAGGGAGACCCAGGCTGGCTCTCACAGCCTGAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCAGGTGCCCAGGGAGACCCAGGCTGGCTCTCACAGCCTGAGTG  933

seq1  CCGAGGTCCTACCCACGTGCCACCTACCCTGCACCAGACATCTTCTCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGTCCTACCCACGTGCCACCTACCCTGCACCAGACATCTTCTCCTT  983

seq1  ACTGCACCCACAGCCTTTCAAGTCTCTTGAGGTAAGGGTTCCTGTAGGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCCACAGCCTTTCAAGTCTCTTGAGGTAAGGGTTCCTGTAGGCC  1033

seq1  AATCTGGCCTGGAACTTGTTACAAAGCCAAGGGTGGCTCTGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGCCTGGAACTTGTTACAAAGCCAAGGGTGGCTCTGAATTC  1079