BAC Information

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BAC

Clone NameB6Ng01-040C23
Chromosome10 (Build37)
Map Location 40,718,297 - 40,876,423
singlet/doubletdoublet
Overlap geneGpr6
Upstream geneAI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1
Downstream geneA530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040C23.bB6Ng01-040C23.g
ACCDH867232DH867233
length1,106991
definitionDH867232|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C23, 5' end.DH867233|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,875,311 - 40,876,423)(40,718,297 - 40,719,141)
sequence
gaattcaacaccagtctgggtaacctattgaggccctgtctcaaaaacaa
gggggggggggtgctgaggatagagcccagatgaagagtacatagctaac
atgtgcaacactctagattcagtctccaggaacacaataagctgaccaac
cagcccaccaatacaccaaccaaccaaaccatccacccatcaaccaacca
attaacccaccaatcaatcaactaacccaccagccaaccagcacatcaac
taacaaacctaacaacccaccaaacaaacaaccaacacaccaacacaccc
atcaactaaccaaccaaccaaccaaccaaccaacccaccagcacatcaat
caagaggcagcacggctaacaacaggctgcctcagattactctctttgtc
tgtgtaagtcaaaggggactttgcatatccttttatttttgctggagtta
tctttgctcctccccaccatccataaaatactgggcaatggctccaggac
caaccaatatatcccccgatgaacacaaatgccttcccacctttgataag
aatcaagaatatgttcttctttacaaaccaaatgaaattaacactctttt
ggggtattacagctaaatgtcagtgtttttttctgagtcttctagttaaa
gtctgtagcctcatcctgggagaaggtggttagctcattttcttcatgaa
tgatgtagcgtgtgaaccaggaagcgtggagggtgatgatgtcagcattc
aggatcactgctgcctgcttctcttgaggctgtggccaccagccactggt
cctcacagaacccagacattttcagatgggtgatccagccctcggcctcc
atacatggatcatggggagccaactgcatgaaactctatctgataggcaa
gatggcaagacaaagagagggatcttgagcagcctttgtgggctctgatt
gctttgctctggctaaatgcacctgatgcttctcgtagggcttcagtatt
caactaaatcccctaagctactactgatagttaagcccacttggagttac
aagagtgaaggatgccaaccctacagctgagacttttatgggtgtgttgg
cttgag
gaattcattaataaaatgcaaattgctttttgaagggaattctcagagga
agcagatttcagattaattggaaggccgccagcggctaggctgcaccact
ggggaaggactgcttggaaagaggaacagatcagtcagtgaaaggccgag
tctgtgcctctcatctcttccgaagcgggttgcctcccagtcagcatcaa
tgccctgtaaaaggttcgaggaatgtacactgtctggtgtgggtggcacc
ttctctgggtctgagtgatacgaattttcatctttttcatggtgtccctg
gattccggcttctctgcatctcattttttttggaggtttgatagggtctt
gtgggaccatgaaacgtagcttggtccccggttgggctaaggattgaaac
cccgcaaattctgaagagactgtagtcgcttcgcctgattccccggcacc
aagcccctgtcactagccgcggcctctcatagatttgtgaccatcagtgc
actgacccaagcctctccacttgtagaagacgtgacctgtggtcacgtag
gctcaaggcagatctccatagtaatgagtattacaggcttggagggctta
gccaataagccttccttcccagacactcttccctgcaaaaagtatttaac
ctcaggctcaccctgagaagtgagatacggttttactcatccactttcca
ccatgacagtaaacatcttaaaaccatggattaggggctggagatggtta
agagcactgactgctcttccagaggtcctgagttcaatttccagcaacca
caaccatctataatgggattcaatgcccccttctggtgtgtctgaagaca
acaacattgtactcatatacattaaataaataaattttttaaaaaagttt
gaaacaaacaaaacaaactatagactgcctcttttcatcaagatcgtcgt
gagagccatggagaagccttcgtcacagaagtcgccatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40875311_40876423
seq2: B6Ng01-040C23.b_45_1150 (reverse)

seq1  CTCAAGCC-ACCCACCCATAAACGTCTCAGCTGGTAGAGTTCGCATTCCT  49
      |||||||| || |||||||||| ||||||||| |||| ||| ||| ||||
seq2  CTCAAGCCAACACACCCATAAAAGTCTCAGCT-GTAGGGTTGGCA-TCCT  48

seq1  ACCCTCTTTGTAACTCACAGTGGGGCTTAACTTTCAGTAGTAGCTTAGGG  99
       | ||| |||||||||  ||| |||||||||| |||||||||||||| ||
seq2  TCACTC-TTGTAACTCCAAGT-GGGCTTAACTATCAGTAGTAGCTTA-GG  95

seq1  GGATTTAGGTTGAATACTGAAGCCCTACGGAGAGCATCAGGTGCCTTTTA  149
      ||||||| |||||||||||||||||||||   ||||||||||| | ||||
seq2  GGATTTA-GTTGAATACTGAAGCCCTACGAGAAGCATCAGGTG-CATTTA  143

seq1  GCCAGAGCAAAGCAATCAGAGCCCACCAAGGGCTGCTCAAGATCCCTCTC  199
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  GCCAGAGCAAAGCAATCAGAGCCCA-CAAAGGCTGCTCAAGATCCCTCTC  192

seq1  TTTGTCTTGCCATCTTGCCTATCAGATAGAGTTTCATGCAGTTTGCTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGTCTTGCCATCTTGCCTATCAGATAGAGTTTCATGCAGTTGGCTCCC  242

seq1  CATGATCCCTGTATGGAGGCCGAGGGCTGGATCACCCATCTGAAAATGTC  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCCATGTATGGAGGCCGAGGGCTGGATCACCCATCTGAAAATGTC  292

seq1  TGGGTTCTGTGAGGACCAGTGGCTGGTGGCCACAGCCTCAAGAGAAGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTGTGAGGACCAGTGGCTGGTGGCCACAGCCTCAAGAGAAGCAG  342

seq1  GCAGCAGTGATCCTGAATGCTGACATCATCACCCTCCACGCTTCCTGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGATCCTGAATGCTGACATCATCACCCTCCACGCTTCCTGGTT  392

seq1  CACACGCTACATCATTCATGAAGAAAATGAGCTAACCACCTTCTCCCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTACATCATTCATGAAGAAAATGAGCTAACCACCTTCTCCCAGG  442

seq1  ATGAGGCTACAGACTTTAACTAGAAGACTCAGAAAAAAACACTGACATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTACAGACTTTAACTAGAAGACTCAGAAAAAAACACTGACATTT  492

seq1  AGCTGTAATACCCCAAAAGAGTGTTAATTTCATTTGGTTTGTAAAGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAATACCCCAAAAGAGTGTTAATTTCATTTGGTTTGTAAAGAAGA  542

seq1  ACATATTCTTGATTCTTATCAAAGGTGGGAAGGCATTTGTGTTCATCGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCTTGATTCTTATCAAAGGTGGGAAGGCATTTGTGTTCATCGGG  592

seq1  GGATATATTGGTTGGTCCTGGAGCCATTGCCCAGTATTTTATGGATGGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATTGGTTGGTCCTGGAGCCATTGCCCAGTATTTTATGGATGGTG  642

seq1  GGGAGGAGCAAAGATAACTCCAGCAAAAATAAAAGGATATGCAAAGTCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGCAAAGATAACTCCAGCAAAAATAAAAGGATATGCAAAGTCCC  692

seq1  CTTTGACTTACACAGACAAAGAGAGTAATCTGAGGCAGCCTGTTGTTAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTTACACAGACAAAGAGAGTAATCTGAGGCAGCCTGTTGTTAGC  742

seq1  CGTGCTGCCTCTTGATTGATGTGCTGGTGGGTTGGTTGGTTGGTTGGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGCCTCTTGATTGATGTGCTGGTGGGTTGGTTGGTTGGTTGGTTG  792

seq1  GTTGGTTAGTTGATGGGTGTGTTGGTGTGTTGGTTGTTTGTTTGGTGGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTAGTTGATGGGTGTGTTGGTGTGTTGGTTGTTTGTTTGGTGGGT  842

seq1  TGTTAGGTTTGTTAGTTGATGTGCTGGTTGGCTGGTGGGTTAGTTGATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTTTGTTAGTTGATGTGCTGGTTGGCTGGTGGGTTAGTTGATTG  892

seq1  ATTGGTGGGTTAATTGGTTGGTTGATGGGTGGATGGTTTGGTTGGTTGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGGGTTAATTGGTTGGTTGATGGGTGGATGGTTTGGTTGGTTGGT  942

seq1  GTATTGGTGGGCTGGTTGGTCAGCTTATTGTGTTCCTGGAGACTGAATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTGGGCTGGTTGGTCAGCTTATTGTGTTCCTGGAGACTGAATCT  992

seq1  AGAGTGTTGCACATGTTAGCTATGTACTCTTCATCTGGGCTCTATCCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTGCACATGTTAGCTATGTACTCTTCATCTGGGCTCTATCCTCA  1042

seq1  GCACCCCCCCCCCCTTGTTTTTGAGACAGGGCCTCAATAGGTTACCCAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCCCCCCCCTTGTTTTTGAGACAGGGCCTCAATAGGTTACCCAGA  1092

seq1  CTGGTGTTGAATTC  1113
      ||||||||||||||
seq2  CTGGTGTTGAATTC  1106

seq1: chr10_40718297_40719141
seq2: B6Ng01-040C23.g_68_912

seq1  GAATTCATTAATAAAATGCAAATTGCTTTTTGAAGGGAATTCTCAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATAAAATGCAAATTGCTTTTTGAAGGGAATTCTCAGAGGA  50

seq1  AGCAGATTTCAGATTAATTGGAAGGCCGCCAGCGGCTAGGCTGCACCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTTCAGATTAATTGGAAGGCCGCCAGCGGCTAGGCTGCACCACT  100

seq1  GGGGAAGGACTGCTTGGAAAGAGGAACAGATCAGTCAGTGAAAGGCCGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGACTGCTTGGAAAGAGGAACAGATCAGTCAGTGAAAGGCCGAG  150

seq1  TCTGTGCCTCTCATCTCTTCCGAAGCGGGTTGCCTCCCAGTCAGCATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTCTCATCTCTTCCGAAGCGGGTTGCCTCCCAGTCAGCATCAA  200

seq1  TGCCCTGTAAAAGGTTCGAGGAATGTACACTGTCTGGTGTGGGTGGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTAAAAGGTTCGAGGAATGTACACTGTCTGGTGTGGGTGGCACC  250

seq1  TTCTCTGGGTCTGAGTGATACGAATTTTCATCTTTTTCATGGTGTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGTCTGAGTGATACGAATTTTCATCTTTTTCATGGTGTCCCTG  300

seq1  GATTCCGGCTTCTCTGCATCTCATTTTTTTTGGAGGTTTGATAGGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCGGCTTCTCTGCATCTCATTTTTTTTGGAGGTTTGATAGGGTCTT  350

seq1  GTGGGACCATGAAACGTAGCTTGGTCCCCGGTTGGGCTAAGGATTGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCATGAAACGTAGCTTGGTCCCCGGTTGGGCTAAGGATTGAAAC  400

seq1  CCCGCAAATTCTGAAGAGACTGTAGTCGCTTCGCCTGATTCCCCGGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAAATTCTGAAGAGACTGTAGTCGCTTCGCCTGATTCCCCGGCACC  450

seq1  AAGCCCCTGTCACTAGCCGCGGCCTCTCATAGATTTGTGACCATCAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTGTCACTAGCCGCGGCCTCTCATAGATTTGTGACCATCAGTGC  500

seq1  ACTGACCCAAGCCTCTCCACTTGTAGAAGACGTGACCTGTGGTCACGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCAAGCCTCTCCACTTGTAGAAGACGTGACCTGTGGTCACGTAG  550

seq1  GCTCAAGGCAGATCTCCATAGTAATGAGTATTACAGGCTTGGAGGGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGCAGATCTCCATAGTAATGAGTATTACAGGCTTGGAGGGCTTA  600

seq1  GCCAATAAGCCTTCCTTCCCAGACACTCTTCCCTGCAAAAAGTATTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAAGCCTTCCTTCCCAGACACTCTTCCCTGCAAAAAGTATTTAAC  650

seq1  CTCAGGCTCACCCTGAGAAGTGAGATACGGTTTTACTCATCCACTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCACCCTGAGAAGTGAGATACGGTTTTACTCATCCACTTTCCA  700

seq1  CCATGACAGTAAACATCTTAAAACCATGGATTAGGGGCTGGAGATGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAGTAAACATCTTAAAACCATGGATTAGGGGCTGGAGATGGTTA  750

seq1  AGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCA  800

seq1  CAACCATCTATAATGGGATTCAATGCCCCCTTCTGGTGTGTCTGA  845
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTATAATGGGATTCAATGCCCCCTTCTGGTGTGTCTGA  845