BAC Information

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BAC

Clone NameB6Ng01-040F18
Chromosome10 (Build37)
Map Location 61,000,370 - 61,144,815
singlet/doubletdoublet
Overlap geneLrrc20, Npffr1, Ppa1, Sar1a
Upstream geneCdh23, Slc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik
Downstream geneTysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F18.bB6Ng01-040F18.g
ACCDH867355DH867356
length969966
definitionDH867355|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F18, 5' end.DH867356|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,143,846 - 61,144,815)(61,000,370 - 61,001,332)
sequence
gaattcttcagtgatgttaaaaagtagtactgggactggagagatggctc
agtgggtaagagcactgactgctcttccagagttcaattcccagcaacca
catgatggctcacaaccatctgtaatgggatccgatgccctctcctggtg
tgtctaacagttacagtgtactcatatacataaaataaatacataaatct
taaaaaaaaaaaaaagtagtactcctctcagagcccagagttgggctgta
ctgctgcccaaagctgaagaaatggccttgctgacactgtccttgagatc
tcgggatctgaaccaattcatccaccagcaaccttagaatttatacagca
ccagcacaaataccttcatctcatcctcccaccaactctagcaagccaag
atgaagacgaggacactctttaggctccctgtcctgttcaagactgtgcg
gtcaaaagcatcagttccaaaagccaggagagacggatcagaggttcaga
gtaccaactgctctcccagaggccctgggttcaagccccagcacccacat
gcggctcagaactgtaacttcatctctaggggatctcacacaggcacaca
tggaggtaaaacaacaattcacatcaaataaaaataaggtatttaagaag
aaaagcctctcacctaaaaaccaaagcccttttcctgctaatattaaatt
ccaatcataagacttccaaaagggtaaaaggtaactttcttccttaacct
accacctacacagacgataatcttaagaacacactattttctattcttcg
tctactctatcatctatggaatgttaagaatattaaaaccaacaacacaa
ttcatgaaccttagtaaaacccgtgcaaatatcaagatgggaacaacaag
tgccagaagaccatcaagcaataaaaaacgttactctcaacataattcac
tccgggtgaatctgggata
gaattccacacccctaagccccttaccccataaaagcccctggcttttga
gccttggggcgggcatctgttatctcctgtgtgggattcatgccggtccg
gagctccgtaattaaacgtcctcatgtaattacagcgagtgggtcctcgt
gtttctttgggtgctctcacactcccgagactagagtgggggtccccgaa
agggggtcttacagtacttgctgcccacttcccactttcggagacggggt
ctctccatagccttggctggcctgagcctcattctgtagactcaaactca
taaagatctgcctgcctttgcctccccaagtgctgggattaaaggcatgt
gtggcacacctggaacactggttctacatcttaaagtcccctaccccagt
tccctccttccccaggggtcaggcttacagcacaagcgcattgggggatg
ctcaaacccagtctgaactgtgagcatggggaagcattcactgcacagtg
ggtgatcctgtgtggttaaagacaatttgctcggtgcttagtagccatca
tccctgtgacaggattcaacatcaccatggaaacacacctctgggcatac
ctgggacggtcttctcagaaaggtttaactgagaaaagaagacccaccct
gaatgtgggcagcatattccctgtagatacagaagcataaccacatcccc
atcttaaagtactgcaggtttccatcctggtgtcagcacagccgtagagt
gtgttgttggcttagttcctcaaggtttttgtttttttgtttctgttttt
ttgtttttttgtttgttttgataacctgggtgtctctcatctggcatttg
ttccttttttaccaacgttaagaaagttgagagttagcaaagcatttatt
tagtctgtcccttaaggcttctttttcctctccctttctgtggtatttag
catctttttaaaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61143846_61144815
seq2: B6Ng01-040F18.b_44_1012 (reverse)

seq1  TATCCCAGATTCACCCGGAGTGAA-TATGTTTGAGAGT-ACGTTTTTTAT  48
      |||||||||||||||||||||||| |||| |||||||| |||||||||||
seq2  TATCCCAGATTCACCCGGAGTGAATTATG-TTGAGAGTAACGTTTTTTAT  49

seq1  TGCTTGATGGTCTTTCTGGCACTTGTTTGTTCCCATCTTGATATTTGCAC  98
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TGCTTGATGGTC-TTCTGGCACTTG-TTGTTCCCATCTTGATATTTGCAC  97

seq1  GGTTTTTACTTAAGGTTCATGAATTGTGTTGTTGGTTTTAATATTCTTAA  148
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTAC-TAAGGTTCATGAATTGTGTTGTTGGTTTTAATATTCTTAA  146

seq1  CATTCCATAGATGATAGAGTAGACGAAGAATAGAAAATAGTGTGTTCTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATAGATGATAGAGTAGACGAAGAATAGAAAATAGTGTGTTCTTA  196

seq1  AGATTATCGTCTGTGTAGGTGGTAGGTTAAGGAAGAAAGTTACCTTTTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCGTCTGTGTAGGTGGTAGGTTAAGGAAGAAAGTTACCTTTTAC  246

seq1  CCTTTTGGAAGTCTTATGATTGGAATTTAATATTAGCAGGAAAAGGGCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGAAGTCTTATGATTGGAATTTAATATTAGCAGGAAAAGGGCTT  296

seq1  TGG-TTTTAGGTGAGAGGCTTTTCTTCTTAAATACCTTATTTTTATTTGA  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTAGGTGAGAGGCTTTTCTTCTTAAATACCTTATTTTTATTTGA  346

seq1  TGTGAATTGTTGTTTTACCTCCATGTGTGCCTGTGTGAGATCCCCTAGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTGTTGTTTTACCTCCATGTGTGCCTGTGTGAGATCCCCTAGAG  396

seq1  ATGAAGTTACAGTTCTGAGCCGCATGTGGGTGCTGGGGCTTGAACCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTACAGTTCTGAGCCGCATGTGGGTGCTGGGGCTTGAACCCAGG  446

seq1  GCCTCTGGGAGAGCAGTTGGTACTCTGAACCTCTGATCCGTCTCTCCTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGGAGAGCAGTTGGTACTCTGAACCTCTGATCCGTCTCTCCTGG  496

seq1  CTTTTGGAACTGATGCTTTTGACCGCACAGTCTTGAACAGGACAGGGAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAACTGATGCTTTTGACCGCACAGTCTTGAACAGGACAGGGAGC  546

seq1  CTAAAGAGTGTCCTCGTCTTCATCTTGGCTTGCTAGAGTTGGTGGGAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGTGTCCTCGTCTTCATCTTGGCTTGCTAGAGTTGGTGGGAGGA  596

seq1  TGAGATGAAGGTATTTGTGCTGGTGCTGTATAAATTCTAAGGTTGCTGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAAGGTATTTGTGCTGGTGCTGTATAAATTCTAAGGTTGCTGGT  646

seq1  GGATGAATTGGTTCAGATCCCGAGATCTCAAGGACAGTGTCAGCAAGGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATTGGTTCAGATCCCGAGATCTCAAGGACAGTGTCAGCAAGGCC  696

seq1  ATTTCTTCAGCTTTGGGCAGCAGTACAGCCCAACTCTGGGCTCTGAGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCAGCTTTGGGCAGCAGTACAGCCCAACTCTGGGCTCTGAGAGG  746

seq1  AGTACTACTTTTTTTTTTTTTTAAGATTTATGTATTTATTTTATGTATAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTACTTTTTTTTTTTTTTAAGATTTATGTATTTATTTTATGTATAT  796

seq1  GAGTACACTGTAACTGTTAGACACACCAGGAGAGGGCATCGGATCCCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACTGTAACTGTTAGACACACCAGGAGAGGGCATCGGATCCCATT  846

seq1  ACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAACTCTGGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAACTCTGGAAG  896

seq1  AGCAGTCAGTGCTCTTACCCACTGAGCCATCTCTCCAGTCCCAGTACTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGCTCTTACCCACTGAGCCATCTCTCCAGTCCCAGTACTAC  946

seq1  TTTTTAACATCACTGAAGAATTC  970
      |||||||||||||||||||||||
seq2  TTTTTAACATCACTGAAGAATTC  969

seq1: chr10_61000370_61001332
seq2: B6Ng01-040F18.g_68_1033

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAGCCCCTGGCTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAGCCCCTGGCTTTTGA  50

seq1  GCCTTGGGGCGGGCATCTGTTATCTCCTGTGTGGGATTCATGCCGGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGGCGGGCATCTGTTATCTCCTGTGTGGGATTCATGCCGGTCCG  100

seq1  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCGAGTGGGTCCTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCGAGTGGGTCCTCGT  150

seq1  GTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCCCCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCCCCGAA  200

seq1  AGGGGGTCTTACAGTACTTGCTGCCCACTTCCCACTTTCGGAGACGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTCTTACAGTACTTGCTGCCCACTTCCCACTTTCGGAGACGGGGT  250

seq1  CTCTCCATAGCCTTGGCTGGCCTGAGCCTCATTCTGTAGACTCAAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATAGCCTTGGCTGGCCTGAGCCTCATTCTGTAGACTCAAACTCA  300

seq1  TAAAGATCTGCCTGCCTTTGCCTCCCCAAGTGCTGGGATTAAAGGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCTGCCTGCCTTTGCCTCCCCAAGTGCTGGGATTAAAGGCATGT  350

seq1  GTGGCACACCTGGAACACTGGTTCTACATCTTAAAGTCCCCTACCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACCTGGAACACTGGTTCTACATCTTAAAGTCCCCTACCCCAGT  400

seq1  TCCCTCCTTCCCCAGGGGTCAGGCTTACAGCACAAGCGCATTGGGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTTCCCCAGGGGTCAGGCTTACAGCACAAGCGCATTGGGGGATG  450

seq1  CTCAAACCCAGTCTGAACTGTGAGCATGGGGAAGCATTCACTGCACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCCAGTCTGAACTGTGAGCATGGGGAAGCATTCACTGCACAGTG  500

seq1  GGTGATCCTGTGTGGTTAAAGACAATTTGCTCGGTGCTTAGTAGCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCCTGTGTGGTTAAAGACAATTTGCTCGGTGCTTAGTAGCCATCA  550

seq1  TCCCTGTGACAGGATTCAACATCACCATGGAAACACACCTCTGGGCATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGACAGGATTCAACATCACCATGGAAACACACCTCTGGGCATAC  600

seq1  CTGGGACGGTCTTCTCAGAAAGGTTTAACTGAGAAAAGAAGACCCACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACGGTCTTCTCAGAAAGGTTTAACTGAGAAAAGAAGACCCACCCT  650

seq1  GAATGTGGGCAGCATATTCCCTGTAGATACAGAAGCATAACCACATCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGGCAGCATATTCCCTGTAGATACAGAAGCATAACCACATCCCC  700

seq1  ATCTTAAAAGTACTGCAGGTTTCCATCCTGGTGTCAGCACAGCCGTAGAG  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTT-AAAGTACTGCAGGTTTCCATCCTGGTGTCAGCACAGCCGTAGAG  749

seq1  TGTGTTGTTGGCTTAGTTCCTCAAGGTTTTTGTTTTTTTTGTTTCTGTTT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTGTTGTTGGCTTAGTTCCTCAAGGTTTTTG-TTTTTTTGTTTCTGTTT  798

seq1  TTTTTGTTTTTTGTTTGTTTTGATAACCT-GGTGTCTCTCAGCTGGCATT  849
      ||||  ||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TTTTGTTTTTTTGTTTGTTTTGATAACCTGGGTGTCTCTCATCTGGCATT  848

seq1  TGTTCCTTTTTTACCAACGTTAAGAAAGTTGAGAGTTAGCAAAGCA-TTA  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTTCCTTTTTTACCAACGTTAAGAAAGTTGAGAGTTAGCAAAGCATTTA  898

seq1  CTTAGTCTGTCCCTT-AGGCTTC-TTTTCCTCTCCCTTTCTGT-GTAATT  945
       |||||||||||||| ||||||| ||||||||||||||||||| ||| ||
seq2  TTTAGTCTGTCCCTTAAGGCTTCTTTTTCCTCTCCCTTTCTGTGGTATTT  948

seq1  AGCATCTCTTTTAAGGTT  963
      ||||||| ||| ||||||
seq2  AGCATCTTTTTAAAGGTT  966