BAC Information

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BAC

Clone NameB6Ng01-041B13
Chromosome10 (Build37)
Map Location 52,292,587 - 52,401,222
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041B13.bB6Ng01-041B13.g
ACCDH867859DH867860
length1,1141,052
definitionDH867859|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B13, 5' end.DH867860|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,400,104 - 52,401,222)(52,292,587 - 52,293,638)
sequence
gaattcaagcacaaaacaccatgaccaagaagcaagttggagaggaaaga
gtttattcaacttactcttccacattgctgtttatcaccaaaggaagtca
ggacaggaacttacacagggcaggaccttggaggcatgagctgatgcaga
ggccatggaggtgtgctgcttactgacttgcttcccctggcttgctcagc
ctgctttcttatagaacccaggactaccagtccagggatggcaccaccca
caatgggccctcccacccttgagcactgattgagaaaatgacttacagct
ggatctcatggagatatttcctcaagggaggctcctttctctgtgataac
tccagcttttgtcaagtgtgcacacaaaaccagccagtataccacacaaa
gaaagccacccaaatgctgaaaacggaatatatcttcatctttcaggtac
acacctgcaggaactatatagttttcatggaaaagaacaaatttacagga
agtgaaaagggtgttaagatacagagtttgcttcagcaagtgcttttctg
gcccattttgtagcaagtctccagcaaacttccttgggttccttccaatc
aaggcaatattgaagcttgcatgtggccttgccttccactcgtgaggcat
ttcggtgatgacctctgtcacaggatcctctacagtatctacaggatcct
atacagtaccgacatggtataaagaatccaacttgtcactttcacagtgt
ctgtcttctgcataaacaaaccaatttgtttcagtaatacatacaggata
ttatatatacatatatatatatatatatatattacatacacacacatata
tatatatatataataaattaaatttttgcttttaattattcagtagaaaa
tatgaaataatttaaacatttattttagtttggtttagttttggaaaact
gaaatttttcacacatactccatcaattattattattcccctttggtttc
ctgtgtatttgctagccaagggagctaagttctctcactaccaataatta
gaaagaaaaaaaggaagaagattttaaaaaatggctttccataatagagg
ttaatattaaaacc
gaattccactgggacttattctttgcactttgaccacttgtgagtttcta
cattaacaatctccactacacacacaaaaaactttttgacgtgatttgat
agctgcactcatatatgaatataggaatttagaagcaaattcgatactat
atctgtttagcagaatactagtagtaggttcattcctggggcatgtgaat
tcaaaactgtgttcttggccagatttacagtacaagccatgtgtttcttt
ctgtgaaagaagtcttaaatacaaccagcagacttttttatacctaccct
tgcacctaaaacttttggaaacttctttttgcagatttgacacagtggaa
catctgttttaactaaagaatttcctttaatacttcttaagattctgatt
gccttttttcccttagtttcccccccccactagatagaattataagctga
cagggtttaatatttttatttttaaaatttattttatttttcattatgtg
tatatatttatctaccaccactttgctagagtaggttaatttctaattac
atcctaagtcttatccttatatacacagatagatgaagctatcatcctat
attaaagagtcttctctttgtagcaaatggaaagcatcagagaaaactac
agctggaactggcaccagtgggtagatcataactcatgcacctatggctc
agagagcattgcagaagtggggatggaaagactgtaagaaccagaacacc
aggaagtctgcagtgaaaacagtctctcatggaaatagtgggtagaaaag
ccagcagccagttcagccagccaggaccatacctgcccatgctctgctag
gccataccctttctgaggacaggatgatgtctgttgcccatgttgccatc
aaaggcaagtggatgtctgtggtctatgctatactgaagccaggccatgt
ctacaggcatgctgccactggggccatatctatgtgaaacctgcactgcc
actgaaggcataatgacatagtatccaggtaacctccaaggcctttgctt
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52400104_52401222
seq2: B6Ng01-041B13.b_43_1156 (reverse)

seq1  GGTTTTAATATTAA-CTCTATTATGTGAAGCCATTTTTTTAAAAATCATC  49
      |||||||||||||| ||||||||||  ||||||||||||  |||||| ||
seq2  GGTTTTAATATTAACCTCTATTATGGAAAGCCATTTTTT--AAAATCTTC  48

seq1  TTCCTTTTTTTCTCTCATAATTATTGTAATTGGAGGAAACCTTAGCTACC  99
      ||||||||||||| || |||||||||  | ||   || | ||||||| ||
seq2  TTCCTTTTTTTCTTTC-TAATTATTGGTAGTG--AGAGAACTTAGCT-CC  94

seq1  CTAGGCTAGCAAATACACAGGAAACCAAAGGGGAATAATAAATAATTGAA  149
      || |||||||||||||||||||||||||||||||||||| |||||||| |
seq2  CTTGGCTAGCAAATACACAGGAAACCAAAGGGGAATAAT-AATAATTG-A  142

seq1  TGGAGTATGTGTGAAAAATTTCAGTTTTCCAAAACTAAACCAAACTAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATGTGTGAAAAATTTCAGTTTTCCAAAACTAAACCAAACTAAAA  192

seq1  TAAATGTTTAAATTATTTCATATTTTCTACTGAATAATTAAAAGC-AAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAATGTTTAAATTATTTCATATTTTCTACTGAATAATTAAAAGCAAAAA  242

seq1  TTTAATTTATTATATATATATATATATGTGTGTGTATGTAATATATATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATTATATATATATATATATGTGTGTGTATGTAATATATATAT  292

seq1  ATATATATATATGTATATAT-ATATCCTGTATGTATTACTGAAACAAATT  347
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATATATATATGTATATATAATATCCTGTATGTATTACTGAAACAAATT  342

seq1  GGTTTGTTTATGCAGAAGACAGACACTGTGAAAGTGACAAGTTGGATTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTATGCAGAAGACAGACACTGTGAAAGTGACAAGTTGGATTCT  392

seq1  TTATACCATGTCGGTACTGTATAGGATCCTGTAGATACTGTAGAGGATCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCATGTCGGTACTGTATAGGATCCTGTAGATACTGTAGAGGATCC  442

seq1  TGTGACAGAGGTCATCACCGAAATGCCTCACGAGTGGAAGGCAAGGCCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGAGGTCATCACCGAAATGCCTCACGAGTGGAAGGCAAGGCCAC  492

seq1  ATGCAAGCTTCAATATTGCCTTGATTGGAAGGAACCCAAGGAAGTTTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCTTCAATATTGCCTTGATTGGAAGGAACCCAAGGAAGTTTGCT  542

seq1  GGAGACTTGCTACAAAATGGGCCAGAAAAGCACTTGCTGAAGCAAACTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTGCTACAAAATGGGCCAGAAAAGCACTTGCTGAAGCAAACTCT  592

seq1  GTATCTTAACACCCTTTTCACTTCCTGTAAATTTGTTCTTTTCCATGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTAACACCCTTTTCACTTCCTGTAAATTTGTTCTTTTCCATGAAA  642

seq1  ACTATATAGTTCCTGCAGGTGTGTACCTGAAAGATGAAGATATATTCCGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAGTTCCTGCAGGTGTGTACCTGAAAGATGAAGATATATTCCGT  692

seq1  TTTCAGCATTTGGGTGGCTTTCTTTGTGTGGTATACTGGCTGGTTTTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATTTGGGTGGCTTTCTTTGTGTGGTATACTGGCTGGTTTTGTG  742

seq1  TGCACACTTGACAAAAGCTGGAGTTATCACAGAGAAAGGAGCCTCCCTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTTGACAAAAGCTGGAGTTATCACAGAGAAAGGAGCCTCCCTTG  792

seq1  AGGAAATATCTCCATGAGATCCAGCTGTAAGTCATTTTCTCAATCAGTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATATCTCCATGAGATCCAGCTGTAAGTCATTTTCTCAATCAGTGC  842

seq1  TCAAGGGTGGGAGGGCCCATTGTGGGTGGTGCCATCCCTGGACTGGTAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGTGGGAGGGCCCATTGTGGGTGGTGCCATCCCTGGACTGGTAGT  892

seq1  CCTGGGTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGGGAAGCAAGTCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGGGAAGCAAGTCAG  942

seq1  TAAGCAGCACACCTCCATGGCCTCTGCATCAGCTCATGCCTCCAAGGTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCACACCTCCATGGCCTCTGCATCAGCTCATGCCTCCAAGGTCC  992

seq1  TGCCCTGTGTAAGTTCCTGTCCTGACTTCCTTTGGTGATAAACAGCAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTGTAAGTTCCTGTCCTGACTTCCTTTGGTGATAAACAGCAATG  1042

seq1  TGGAAGAGTAAGTTGAATAAACTCTTTCCTCTCCAACTTGCTTCTTGGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGTAAGTTGAATAAACTCTTTCCTCTCCAACTTGCTTCTTGGTC  1092

seq1  ATGGTGTTTTGTGCTTGAATTC  1119
      ||||||||||||||||||||||
seq2  ATGGTGTTTTGTGCTTGAATTC  1114

seq1: chr10_52292587_52293638
seq2: B6Ng01-041B13.g_69_1113

seq1  GAATTCCACTGGGACTTATTCTTTGCACTTTGACCACTTGTGAGTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGGGACTTATTCTTTGCACTTTGACCACTTGTGAGTTTCTA  50

seq1  CATTAACAATCTCCACTACACACACAAAAAACTTTTTGACGTGATTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAATCTCCACTACACACACAAAAAACTTTTTGACGTGATTTGAT  100

seq1  AGCTGCACTCATATATGAATATAGGAATTTAGAAGCAAATTCGATACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACTCATATATGAATATAGGAATTTAGAAGCAAATTCGATACTAT  150

seq1  ATCTGTTTAGCAGAATACTAGTAGTAGGTTCATTCCTGGGGCATGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTAGCAGAATACTAGTAGTAGGTTCATTCCTGGGGCATGTGAAT  200

seq1  TCAAAACTGTGTTCTTGGCCAGATTTACAGTACAAGCCATGTGTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTGTGTTCTTGGCCAGATTTACAGTACAAGCCATGTGTTTCTTT  250

seq1  CTGTGAAAGAAGTCTTAAATACAACCAGCAGACTTTTTTATACCTACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAGAAGTCTTAAATACAACCAGCAGACTTTTTTATACCTACCCT  300

seq1  TGCACCTAAAACTTTTGGAAACTTCTTTTTGCAGATTTGACACAGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTAAAACTTTTGGAAACTTCTTTTTGCAGATTTGACACAGTGGAA  350

seq1  CATCTGTTTTAACTAAAGAATTTCCTTTAATACTTCTTAAGATTCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTTAACTAAAGAATTTCCTTTAATACTTCTTAAGATTCTGATT  400

seq1  GCCTTTTTTCCCTTAGTTTCCCCCCCCCACTAGATAGAATTATAAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTTCCCTTAGTTTCCCCCCCCCACTAGATAGAATTATAAGCTGA  450

seq1  CAGGGTTTAATATTTTTATTTTTAAAATTTATTTTATTTTTCATTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTAATATTTTTATTTTTAAAATTTATTTTATTTTTCATTATGTG  500

seq1  TATATATTTATCTACCACCACTTTGCTAGAGTAGGTTAATTTCTAATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTATCTACCACCACTTTGCTAGAGTAGGTTAATTTCTAATTAC  550

seq1  ATCCTAAGTCTTATCCTTATATACACAGATAGATGAAGCTATCATCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGTCTTATCCTTATATACACAGATAGATGAAGCTATCATCCTAT  600

seq1  ATTAAAGAGTCTTCTCTTTGTAGCAAATGGAAAGCATCAGAGAAAACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAGTCTTCTCTTTGTAGCAAATGGAAAGCATCAGAGAAAACTAC  650

seq1  AGCTGGAACTGGCACCAGTGGGTAGATCATAACTCATGCACCTATGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAACTGGCACCAGTGGGTAGATCATAACTCATGCACCTATGGCTC  700

seq1  AGAGAGCATTGCAGAAGTGGGGATGGAAAGACTGTAAGAACCAGAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATTGCAGAAGTGGGGATGGAAAGACTGTAAGAACCAGAACACC  750

seq1  AGGAAGTCTGCAGTG-AAACAGTCTCTCATGGAAATAGT-GGTAGAAAAG  798
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  AGGAAGTCTGCAGTGAAAACAGTCTCTCATGGAAATAGTGGGTAGAAAAG  800

seq1  CCAGCAGCCAGTTCAGCCAGCCAGGACCATACCTGCCCATGCTCTGCTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCCAGTTCAGCCAGCCAGGACCATACCTGCCCATGCTCTGCTAG  850

seq1  GCCATACCC-TTCTGAGGACCAGGATGATGTCTGTTGCCCATGTTGCCAT  897
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  GCCATACCCTTTCTGAGGA-CAGGATGATGTCTGTTGCCCATGTTGCCAT  899

seq1  CAAAGGCAAGTGGATGTCTGTGGTCTATGCTATACCTGAAGCCATGCCCA  947
      |||||||||||||||||||||||||||||||||| ||||||||| | |||
seq2  CAAAGGCAAGTGGATGTCTGTGGTCTATGCTATA-CTGAAGCCA-GGCCA  947

seq1  TGTCTACAGGCCATGCTGCCACTGGGGCCATATCTATGTGAATACCCTGC  997
      |||||||||| ||||||||||||||||||||||||||||||  | |||||
seq2  TGTCTACAGG-CATGCTGCCACTGGGGCCATATCTATGTGA--AACCTGC  994

seq1  ACTGCCACCTGAGGCCATAATGACATCAGTAATCCAGGTAGCCTCCAAGG  1047
      ||||||| |||| | ||||||||||| ||| ||||||||| ||||||| |
seq2  ACTGCCA-CTGAAGGCATAATGACAT-AGT-ATCCAGGTAACCTCCAA-G  1040

seq1  GCCTT  1052
      |||||
seq2  GCCTT  1045