BAC Information

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BAC

Clone NameB6Ng01-042O15
Chromosome10 (Build37)
Map Location 55,985,401 - 56,151,390
singlet/doubletdoublet
Overlap geneEG629732, Gja1
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042O15.bB6Ng01-042O15.g
ACCDH869138DH869139
length89699
definitionDH869138|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O15, 5' end.DH869139|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,985,401 - 55,986,190)(56,151,055 - 56,151,390)
sequence
gaattcccagcctatgctactgctgagggccatgtctgcttctatggcca
ttatggccatagaacaacaggggactatgtcaatgtatgtggcctatatt
accaccatgcctagtttgggctgcagcttgggaccacgctgatttcccca
gaagcttgcctcattggctgctgcactcaggagagcaagctctgaacctt
gcctgggtaacacagtagagctggccctggtggcaggactacaggtgagc
tggcccctagggcatgagttctggagaactgtctttgccccttgcctgcg
gtgcactgagtaggcctgggaagtgctggagagctggctctggtggtatg
ggtatgggagggctggccaactcaccaagtcagcttctacctatgcccag
atccagggcttgagttggcctcatcctaacatctactccatcaatgaaat
gctggaatgcatgaagggaccagtcctaagacatgtccaaagctgcggga
tttccatgacaaaaggcaacaacaggctatctgagaaaagtccctgtgag
gatccagtattgatagtgtagcagaagccagggaccttaccaatgactca
ttgcaatgaaatgttattgatactaaaccagattaatataaaattttcat
atgtttaatcataaaacgggaaggaaagaaacatgaggtaatagatgtta
attggcttagatgaatttttctgcaatgtatgtataatgcaatccaattt
gaaccgaataaacaaattctgttttctggattacaattgtctttacctcc
cgatgggctaatttgcagagcacaacttccatgctttctttttttctgta
tataatatcatattttaaaattaattcatataatccttgtttaagg
tcccaaggtgaccgctttctccactgctcatcaccacctagtcaacagaa
ctcagcaacctttacttcctctcctcctcctcctcctcctccaccacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_55985401_55986190
seq2: B6Ng01-042O15.b_158_943

seq1  CTAGTTTGGGCTGCAGCTTGGGACCACGCTGATTTCCCCAGAAGCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGGGCTGCAGCTTGGGACCACGCTGATTTCCCCAGAAGCTTGCC  50

seq1  TCATTGGCTGCTGCACTCAGGAGAGCAAGCTCTGAACCTTGCCTGGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTGCTGCACTCAGGAGAGCAAGCTCTGAACCTTGCCTGGGTAA  100

seq1  CACAGTAGAGCTGGCCCTGGTGGCAGGACTACAGGTGAGCTGGCCCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGAGCTGGCCCTGGTGGCAGGACTACAGGTGAGCTGGCCCCTAG  150

seq1  GGCATGAGTTCTGGAGAACTGTCTTTGCCCCTTGCCTGCGGTGCACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGTTCTGGAGAACTGTCTTTGCCCCTTGCCTGCGGTGCACTGAG  200

seq1  TAGGCCTGGGAAGTGCTGGAGAGCTGGCTCTGGTGGTATGGGTATGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGGGAAGTGCTGGAGAGCTGGCTCTGGTGGTATGGGTATGGGAG  250

seq1  GGCTGGCCAACTCACCAAGTCAGCTTCTACCTATGCCCAGATCCAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCAACTCACCAAGTCAGCTTCTACCTATGCCCAGATCCAGGGCT  300

seq1  TGAGTTGGCCTCATCCTAACATCTACTCCATCAATGAAATGCTGGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGCCTCATCCTAACATCTACTCCATCAATGAAATGCTGGAATGC  350

seq1  ATGAAGGGACCAGTCCTAAGACATGTCCAAAGCTGCGGGATTTCCATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGACCAGTCCTAAGACATGTCCAAAGCTGCGGGATTTCCATGAC  400

seq1  AAAAGGCAACAACAGGCTATCTGAGAAAAGTCCCTGTGAGGATCCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAACAACAGGCTATCTGAGAAAAGTCCCTGTGAGGATCCAGTAT  450

seq1  TGATAGTGTAGCAGAAGCCAGGGACCTTACCAATGACTCATTGCAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGTAGCAGAAGCCAGGGACCTTACCAATGACTCATTGCAATGAA  500

seq1  ATGTTATTGATACTAAACCAGATTAATATAAAATTTTCATATGTTTAAAT  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTTATTGATACTAAACCAGATTAATATAAAATTTTCATATGTTT-AAT  549

seq1  CATAAAAC-GGAAGGAAAGAAACATGAGGTAATAGATGTTAACTGGCTTA  599
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CATAAAACGGGAAGGAAAGAAACATGAGGTAATAGATGTTAATTGGCTTA  599

seq1  GATGAATTTTTCTGCAATGTATGTATAATGC-ATCCAA-TTGTACCGAAT  647
      ||||||||||||||||||||||||||||||| |||||| ||| |||||||
seq2  GATGAATTTTTCTGCAATGTATGTATAATGCAATCCAATTTGAACCGAAT  649

seq1  AAACAAATTCTGTTTTCTGGATTACAATTGTCTTTACCTCCCGATGGGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTCTGTTTTCTGGATTACAATTGTCTTTACCTCCCGATGGGCT  699

seq1  AATTTTGCAGAGCACATCTTCCATTGCTTTCTTTTTTTTCTGTATATAAT  747
      || ||||||||||||| |||||| ||||||| ||||||||||||||||||
seq2  AA-TTTGCAGAGCACAACTTCCA-TGCTTTC-TTTTTTTCTGTATATAAT  746

seq1  TATTTATTTTTTAAAATTAAGTCAAATAAATTCTTGTTTAAGG  790
         | || |||||||||||| ||| || ||| |||||||||||
seq2  --ATCATATTTTAAAATTAATTCATAT-AATCCTTGTTTAAGG  786

seq1: chr10_56151055_56151390
seq2: B6Ng01-042O15.g_74_172 (reverse)

seq1  TGGTGGTTGTAATTGTTACAACACTGTCTGCATTTATTTAGAATAAAAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACTAGCTTATCATCCATCTTTTGTTCCCTGGATGTAGCACCCATTAAAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCAGTAAATGTGTTGGATGAATAAATAAGGGAGTGAATCATAAGAATG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTACCTGAGGAGGAAAATGCTCGCCAGCCAAACAATGGAACCTCTATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA  250
                                            || || ||||||
seq2  -------------------------------------TGGTGGTGGAGGA  13

seq1  GGAGGAGGAGGAGGAGAGGAAGTAAAGGTTGCTGAGTTCTGTTGACTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGAGGAAGTAAAGGTTGCTGAGTTCTGTTGACTAGG  63

seq1  TGGTGATGAGCAGTGGAGAAAGCGGTCACCTTGGGA  336
      ||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGAGCAGTGGAGAAAGCGGTCACCTTGGGA  99