BAC Information

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BAC

Clone NameB6Ng01-044L22
Chromosome10 (Build37)
Map Location 100,179,901 - 100,233,590
singlet/doubletdoublet
Overlap genenone
Upstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L22.bB6Ng01-044L22.g
ACCDH870412DH870413
length1,0621,131
definitionDH870412|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L22, 5' end.DH870413|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,232,528 - 100,233,590)(100,179,901 - 100,181,040)
sequence
gaattctgaatccataatgattaatagtacaatatcgtgattgctttctg
cttatatctctactagatgaatgtggttttcctaaaatgttgttgttaag
atagagactgaaaatatacttgtaaatactttcgttattgtaaagtcaaa
cagtagccagataaaagagctgagtgcctagactgagaaacaagtcactt
actctttctgaaacaggaagaccatagtaagagccaccttcctgcataca
gttctcataagtcagggtggtggctttctccagtttacgtgaatctcagc
acttttctctctaactgtagaaacattttcaatttatgggtgtgaatttt
atgcctgcatacactaatgtgctccatgtatatgcctggttcatgaggag
atcagaaaagggcatcagatcccctggaactggagttttagatggttgtg
attgccatgtttatgctgggagtcaacacaggagttctctgtaagagcag
gaagtggttgtaaccactgagctgtctcaccagccttcttcctatctttt
attccactatattgaggtctagtgtgtagctactgtagtctaggtttttc
gtaaatgtgtcaatattatggtgtgtgtatgtgtgtgtgtgtaacatcaa
ttaaagaaaacgatactaattttaatgcatttaattttaaaagcattaat
ttgaaagagcaggtggtgataagagagattagaggagtgaaaggggaagg
tgaaaccatgtaactatattataatttcaagatgtaaaagtttacctttt
aaattgcacttacctttgtatttatggctttatacttaactgttttgccc
tagactctcatgtcctacatctgtgtactatttacttgagagtatcactt
ttttgtttcttacatccactaatgaggaagatcctggagataagagtgga
tcacactatagtctctagcccttaaagatactgatgggtagtgattgttg
tgttaatggtaataaaatgatttgaccctaaaacctatttggtgtataaa
ctttttgattaa
gaattccctcctgtagagcaagtgtcaaatccaatcagaaagctgctctt
ggaccagtaggtgtatctttcatggcaggttagaattgttgggtgcagtg
tcctgaacaggataagaccattgtgttctctatatcagctggcacagccc
attcggtatatgaaaactagcctaaaaggatgaagtttctacatcaattt
gggatttacgttgtgtaagatttttgtctttttaaaaaacatacagtata
tttaatatagagcaaacactagctgtatcctagctttggatttagcatta
tagaaaagtatttttttttcaactccaatacgtgtttttataattcagat
agttctcagaaactggtaggtagttatattataaatttggggcagaaagg
agccgacatcgagttcagaatggttttgaacatgatctagggttttgatt
ttcccatgtttttacaatgtaacctggtatttataaatttcaattctaca
ttaaacatttgccttccagcacgtttacacttatgttcattttctgacca
acaggtactcaacagcacttgtttttgaagaaattttaaattcttccctg
attctatttccccattatcttccattccccggactgcccctccccttcat
atacacagttccctggcctatggcttcatctttctgaacaggaaaactcc
ttcttttgtttaattaatgactctattatccatgtagatgaatgcataca
tgtgtgtgtttctgtgtctttacatttcatttaaatatttttcatttatt
tcattttcacctgtgattgatatcttataagcagaaagctagtgaagggg
gtatctaagtgcacgctactgttttctggactctaacttgtaaactaaca
ctgtatttctatctgcacacttccaaatgtctacattcccctaagctgta
caaaatggaatacaaaagtatttttgtgactagccgagtttcatttgtga
gagtttagcttttcaaaatcagcaataagagttaaaaaaagtctttcggt
tgaaatggtgatttttctggtgtactcctcttgccatagcagtcttgtac
tttgggtaaaagagaaacaatcaaaggtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100232528_100233590
seq2: B6Ng01-044L22.b_44_1105 (reverse)

seq1  TTAATCAAAAAGTTTCTACA-CATATAGGTTTTAAGGTCAAAAATCATTT  49
      ||||||||||||||| |||| || |||||||||| ||||  |||||| ||
seq2  TTAATCAAAAAGTTTATACACCAAATAGGTTTTAGGGTC--AAATCA-TT  47

seq1  TTATTACCATTTAACACAACAATCACTA-CCATCAGTATCTTTTAGGCTA  98
      ||||||||| |||||||||||||||||| |||||||||||||| |||   
seq2  TTATTACCA-TTAACACAACAATCACTACCCATCAGTATCTTTAAGGGCT  96

seq1  AGAGACTATAGTGTTGAT-CACTCTTAATCTTCAGGGTTCTCCTCATTAG  147
      ||||||||||||| |||| ||||||| |||| |||| |  ||||||||||
seq2  AGAGACTATAGTG-TGATCCACTCTT-ATCTCCAGGATCTTCCTCATTAG  144

seq1  TGGATGTAAGAAACAAAAAAGTGATACTCTCAAGTAAATAGTACACAGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTAAGAAACAAAAAAGTGATACTCTCAAGTAAATAGTACACAGAT  194

seq1  GTAGGACATGAGAGTCTAGGGCAAAACAGTTAAGTAT-AAGCCATAAATA  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTAGGACATGAGAGTCTAGGGCAAAACAGTTAAGTATAAAGCCATAAATA  244

seq1  C-AAGGTAAGTGCAATTTAAAAGGTAAACTTTTACATCTTGAAATTATAA  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAAGTGCAATTTAAAAGGTAAACTTTTACATCTTGAAATTATAA  294

seq1  TATAGTTACATGGTTTCACCTTCCCCTTTCACTCCTCTAATCTCTCTTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTACATGGTTTCACCTTCCCCTTTCACTCCTCTAATCTCTCTTAT  344

seq1  CACCACCTGCTCTTTCAAATTAATGCTTTTAAAATTAAATGCATTAAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTGCTCTTTCAAATTAATGCTTTTAAAATTAAATGCATTAAAAT  394

seq1  TAGTATCGTTTTCTTTAATTGATGTTACACACACACACATACACACACCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCGTTTTCTTTAATTGATGTTACACACACACACATACACACACCA  444

seq1  TAATATTGACACATTTACGAAAAACCTAGACTACAGTAGCTACACACTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGACACATTTACGAAAAACCTAGACTACAGTAGCTACACACTAG  494

seq1  ACCTCAATATAGTGGAATAAAAGATAGGAAGAAGGCTGGTGAGACAGCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATATAGTGGAATAAAAGATAGGAAGAAGGCTGGTGAGACAGCTC  544

seq1  AGTGGTTACAACCACTTCCTGCTCTTACAGAGAACTCCTGTGTTGACTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTACAACCACTTCCTGCTCTTACAGAGAACTCCTGTGTTGACTCC  594

seq1  CAGCATAAACATGGCAATCACAACCATCTAAAACTCCAGTTCCAGGGGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAACATGGCAATCACAACCATCTAAAACTCCAGTTCCAGGGGAT  644

seq1  CTGATGCCCTTTTCTGATCTCCTCATGAACCAGGCATATACATGGAGCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTTTTCTGATCTCCTCATGAACCAGGCATATACATGGAGCAC  694

seq1  ATTAGTGTATGCAGGCATAAAATTCACACCCATAAATTGAAAATGTTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTATGCAGGCATAAAATTCACACCCATAAATTGAAAATGTTTCT  744

seq1  ACAGTTAGAGAGAAAAGTGCTGAGATTCACGTAAACTGGAGAAAGCCACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGAGAGAAAAGTGCTGAGATTCACGTAAACTGGAGAAAGCCACC  794

seq1  ACCCTGACTTATGAGAACTGTATGCAGGAAGGTGGCTCTTACTATGGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACTTATGAGAACTGTATGCAGGAAGGTGGCTCTTACTATGGTCT  844

seq1  TCCTGTTTCAGAAAGAGTAAGTGACTTGTTTCTCAGTCTAGGCACTCAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTCAGAAAGAGTAAGTGACTTGTTTCTCAGTCTAGGCACTCAGC  894

seq1  TCTTTTATCTGGCTACTGTTTGACTTTACAATAACGAAAGTATTTACAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCTGGCTACTGTTTGACTTTACAATAACGAAAGTATTTACAAG  944

seq1  TATATTTTCAGTCTCTATCTTAACAACAACATTTTAGGAAAACCACATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAGTCTCTATCTTAACAACAACATTTTAGGAAAACCACATTC  994

seq1  ATCTAGTAGAGATATAAGCAGAAAGCAATCACGATATTGTACTATTAATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTAGAGATATAAGCAGAAAGCAATCACGATATTGTACTATTAATC  1044

seq1  ATTATGGATTCAGAATTC  1063
      ||||||||||||||||||
seq2  ATTATGGATTCAGAATTC  1062

seq1: chr10_100179901_100181040
seq2: B6Ng01-044L22.g_67_1197

seq1  GAATTCCCTCCTGTAGAGCAAGTGTCAAATCCAATCAGAAAGCTGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCTGTAGAGCAAGTGTCAAATCCAATCAGAAAGCTGCTCTT  50

seq1  GGACCAGTAGGTGTATCTTTCATGGCAGGTTAGAATTGTTGGGTGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGTAGGTGTATCTTTCATGGCAGGTTAGAATTGTTGGGTGCAGTG  100

seq1  TCCTGAACAGGATAAGACCATTGTGTTCTCTATATCAGCTGGCACAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACAGGATAAGACCATTGTGTTCTCTATATCAGCTGGCACAGCCC  150

seq1  ATTCGGTATATGAAAACTAGCCTAAAAGGATGAAGTTTCTACATCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGTATATGAAAACTAGCCTAAAAGGATGAAGTTTCTACATCAATTT  200

seq1  GGGATTTACGTTGTGTAAGATTTTTGTCTTTTTAAAAAACATACAGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTACGTTGTGTAAGATTTTTGTCTTTTTAAAAAACATACAGTATA  250

seq1  TTTAATATAGAGCAAACACTAGCTGTATCCTAGCTTTGGATTTAGCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATAGAGCAAACACTAGCTGTATCCTAGCTTTGGATTTAGCATTA  300

seq1  TAGAAAAGTATTTTTTTTTCAACTCCAATACGTGTTTTTATAATTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTATTTTTTTTTCAACTCCAATACGTGTTTTTATAATTCAGAT  350

seq1  AGTTCTCAGAAACTGGTAGGTAGTTATATTATAAATTTGGGGCAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGAAACTGGTAGGTAGTTATATTATAAATTTGGGGCAGAAAGG  400

seq1  AGCCGACATCGAGTTCAGAATGGTTTTGAACATGATCTAGGGTTTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGACATCGAGTTCAGAATGGTTTTGAACATGATCTAGGGTTTTGATT  450

seq1  TTCCCATGTTTTTACAATGTAACCTGGTATTTATAAATTTCAATTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGTTTTTACAATGTAACCTGGTATTTATAAATTTCAATTCTACA  500

seq1  TTAAACATTTGCCTTCCAGCACGTTTACACTTATGTTCATTTTCTGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTTGCCTTCCAGCACGTTTACACTTATGTTCATTTTCTGACCA  550

seq1  ACAGGTACTCAACAGCACTTGTTTTTGAAGAAATTTTAAATTCTTCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACTCAACAGCACTTGTTTTTGAAGAAATTTTAAATTCTTCCCTG  600

seq1  ATTCTATTTCCCCATTATCTTCCATTCCCCGGACTGCCCCTCCCCTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTCCCCATTATCTTCCATTCCCCGGACTGCCCCTCCCCTTCAT  650

seq1  ATACACAGTTCCCTGGCCTATGGCTTCATCTTTCTGAACAGGAAAACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGTTCCCTGGCCTATGGCTTCATCTTTCTGAACAGGAAAACTCC  700

seq1  TTCTTTTGTTTAATTAATGACTCTATTATCCATGTAGATGAATGCATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTTTAATTAATGACTCTATTATCCATGTAGATGAATGCATACA  750

seq1  TGTGTGTGTTTCTGTGTCTTTACATTTCATTTAAATA-TTTTCATTTATT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTGTGTGTTTCTGTGTCTTTACATTTCATTTAAATATTTTTCATTTATT  800

seq1  TCATTTTCACCTGTGATTGATATCTTATAAGCAGAAAGCTAGTGAAGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCACCTGTGATTGATATCTTATAAGCAGAAAGCTAGTGAAGGGG  850

seq1  GTATCTAAGTGCACGCTACTGTTTTCTGGACTCTAACTTGTAAACTAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAAGTGCACGCTACTGTTTTCTGGACTCTAACTTGTAAACTAACA  900

seq1  CTGTATTTCTATCTGCACACTTCCAAATGTCTACATTCCCCTAAGCTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTCTATCTGCACACTTCCAAATGTCTACATTCCCCTAAGCTGTA  950

seq1  CAAAATGGAATACAAAAGTATTTTTGTGACTAGCCGAAGTTTCCATTTTG  999
      |||||||||||||||||||||||||||||||||||| ||||||   ||||
seq2  CAAAATGGAATACAAAAGTATTTTTGTGACTAGCCG-AGTTTC--ATTTG  997

seq1  TGAGAGTTTAGCTTTTCAAAAATTCAGCAATAAGAGTTAAAAAAAAGTCT  1049
      |||||||||||||||||||||  ||||||||||||||| |||||||||||
seq2  TGAGAGTTTAGCTTTTCAAAA--TCAGCAATAAGAGTT-AAAAAAAGTCT  1044

seq1  TTCGAGTGAAATGGTGATTTTTCTGTGTTACTCCTCTTTGCCATAGGCAG  1099
      ||||  |||||||||||||||||||   |||||||| |||||||| ||||
seq2  TTCGGTTGAAATGGTGATTTTTCTGGTGTACTCCTC-TTGCCATA-GCAG  1092

seq1  TCCTTGTACTTTGGTGTTAACAGAG-AACAATCAGAGGTGTA  1140
      | |||||||||||  | ||| |||| |||||||| |||||||
seq2  T-CTTGTACTTTG--GGTAAAAGAGAAACAATCAAAGGTGTA  1131