BAC Information

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BAC

Clone NameB6Ng01-045A22
Chromosome10 (Build37)
Map Location 78,310,246 - 78,423,680
singlet/doubletdoublet
Overlap geneOlfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574
Upstream geneC330046G03Rik, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6
Downstream geneOlfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045A22.bB6Ng01-045A22.g
ACCDH870626DH870627
length7171,034
definitionDH870626|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A22, 5' end.DH870627|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,422,964 - 78,423,680)(78,310,246 - 78,311,309)
sequence
gaattcatttttatttatttatttatttatttatttatttatttatttat
ttatgtggatatttggcaatggatatgtgtgcatctgtgccaatgtctgc
agagtgctgaagggagcctagatcccatttgaaccaactacaggttacta
ctgagaactgtgtcatagatacagagagtgaaattctggtcctctgcaag
agtagcaagtgtccttaactgctgagctttccttccagtcctagtaataa
catttttttattatttatatcatctatatacttttggtttaaagtctaat
ttattagacactagagctggctggattgttaacagcaattggtgctctag
cagaggatccacatttaatttctaatactcacaaggtgttttacaattcg
tgacttcagtcccagaggattcattcttctgccctttgtgagaacccagc
acagaaatgcatgtaggcagatactcaaaagtacaaaatgaaaaatgaga
aaaaaagtcatctttatcatacattagaatttctagactaacttgaatta
gtctatcacccattgtttgatagaatgatttccatcctttaattcttagc
ctgtaggtatctgtatgtgtgtgctatttttaagaagtatactaggatct
agggcttagtttcatgttatatgttctttgattattttttgaatttgtga
gtgtgggtgggtaggta
gaattcatgatgaccacatagtgcaagggatggcagatggccacaaagcg
gtcataggccatcactgataggagtaaattgtccaggcatccaaacacaa
tgaaaaaaaatatctgtgtgatgcagcccgagaaagagatgaatttgctt
tgtgtgcggatattctgcagaaccttggggatagtggtggaggtgaagcc
gatgtcagctatggacaggttggagaggaataagtacatgggcatgtgca
ggtgggggtcagatatgatggccacaatgatgagcaagttgcctgtgatg
gtgaccaggtacatagaaagaagcaacccaaagaagaaggactgcaggtc
agagtcttctgtgaatcccaggaggagaaagtttctttctcctgtttggt
tttctctttccataggactgcagggattacccaaaaggagagagagagaa
aaacagcacaaattcatctcaagtggatcctgccaaataatgctaatata
tcttattaaaacttaaggtattagctagacattgtggcacaagcctttaa
taccagcacttggaaggcagaggctggcagatgttagtgagtttgaactt
acagtctgttctatacagcaagttctacaataactagagctaagtagaga
ctctgtctcaaagtaccccaaacaaaacaaaagaacccccccccccaacc
caaggtgttatctggtaagatgacacagtaagctaaggccctttctgcca
agactgatgactgcattttgatttctagcaaacaggtggtgtaaagagag
acacaagttcttaagttgtcttttgacctctatacacgtgccatgacatg
tgtgtgcatgcacacacacagaataataataaatttagggctgatagatg
gcttagcagttaaggtcatactctttgcaggtctgattagtcacagtacc
atgtggaacagctcaaacacatgtactcagtctagagtctgatgccctct
ctggtttgcagactgcatcatgcatcatgtgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_78422964_78423680
seq2: B6Ng01-045A22.b_44_760 (reverse)

seq1  TACCTACCCACCCACACTCACAAATTCAAAAAATAATCAAAGAACATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCCACCCACACTCACAAATTCAAAAAATAATCAAAGAACATATA  50

seq1  ACATGAAACTAAGCCCTAGATCCTAGTATACTTCTTAAAAATAGCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAACTAAGCCCTAGATCCTAGTATACTTCTTAAAAATAGCACACA  100

seq1  CATACAGATACCTACAGGCTAAGAATTAAAGGATGGAAATCATTCTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATACCTACAGGCTAAGAATTAAAGGATGGAAATCATTCTATCA  150

seq1  AACAATGGGTGATAGACTAATTCAAGTTAGTCTAGAAATTCTAATGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGGTGATAGACTAATTCAAGTTAGTCTAGAAATTCTAATGTATG  200

seq1  ATAAAGATGACTTTTTTTCTCATTTTTCATTTTGTACTTTTGAGTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGACTTTTTTTCTCATTTTTCATTTTGTACTTTTGAGTATCTG  250

seq1  CCTACATGCATTTCTGTGCTGGGTTCTCACAAAGGGCAGAAGAATGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGCATTTCTGTGCTGGGTTCTCACAAAGGGCAGAAGAATGAATC  300

seq1  CTCTGGGACTGAAGTCACGAATTGTAAAACACCTTGTGAGTATTAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGACTGAAGTCACGAATTGTAAAACACCTTGTGAGTATTAGAAAT  350

seq1  TAAATGTGGATCCTCTGCTAGAGCACCAATTGCTGTTAACAATCCAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGATCCTCTGCTAGAGCACCAATTGCTGTTAACAATCCAGCCA  400

seq1  GCTCTAGTGTCTAATAAATTAGACTTTAAACCAAAAGTATATAGATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTGTCTAATAAATTAGACTTTAAACCAAAAGTATATAGATGATA  450

seq1  TAAATAATAAAAAAATGTTATTACTAGGACTGGAAGGAAAGCTCAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAAAAAAATGTTATTACTAGGACTGGAAGGAAAGCTCAGCAGT  500

seq1  TAAGGACACTTGCTACTCTTGCAGAGGACCAGAATTTCACTCTCTGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACACTTGCTACTCTTGCAGAGGACCAGAATTTCACTCTCTGTATC  550

seq1  TATGACACAGTTCTCAGTAGTAACCTGTAGTTGGTTCAAATGGGATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACAGTTCTCAGTAGTAACCTGTAGTTGGTTCAAATGGGATCTAG  600

seq1  GCTCCCTTCAGCACTCTGCAGACATTGGCACAGATGCACACATATCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTCAGCACTCTGCAGACATTGGCACAGATGCACACATATCCATT  650

seq1  GCCAAATATCCACATAAATAAATAAATAAATAAATAAATAAATAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATATCCACATAAATAAATAAATAAATAAATAAATAAATAAATAAA  700

seq1  TAAATAAAAATGAATTC  717
      |||||||||||||||||
seq2  TAAATAAAAATGAATTC  717

seq1: chr10_78310246_78311309
seq2: B6Ng01-045A22.g_65_1098

seq1  GAATTCATGATGACCACATAGTGCAAGGGATGGCAGATGGCCACAAAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGACCACATAGTGCAAGGGATGGCAGATGGCCACAAAGCG  50

seq1  GTCATAGGCCATCACTGATAGGAGTAAATTGTCCAGGCATCCAAACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGGCCATCACTGATAGGAGTAAATTGTCCAGGCATCCAAACACAA  100

seq1  TGAAAAAAAATATCTGTGTGATGCAGCCCGAGAAAGAGATGAATTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAATATCTGTGTGATGCAGCCCGAGAAAGAGATGAATTTGCTT  150

seq1  TGTGTGCGGATATTCTGCAGAACCTTGGGGATAGTGGTGGAGGTGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGGATATTCTGCAGAACCTTGGGGATAGTGGTGGAGGTGAAGCC  200

seq1  GATGTCAGCTATGGACAGGTTGGAGAGGAATAAGTACATGGGCATGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGCTATGGACAGGTTGGAGAGGAATAAGTACATGGGCATGTGCA  250

seq1  GGTGGGGGTCAGATATGATGGCCACAATGATGAGCAAGTTGCCTGTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTCAGATATGATGGCCACAATGATGAGCAAGTTGCCTGTGATG  300

seq1  GTGACCAGGTACATAGAAAGAAGCAACCCAAAGAAGAAGGACTGCAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGGTACATAGAAAGAAGCAACCCAAAGAAGAAGGACTGCAGGTC  350

seq1  AGAGTCTTCTGTGAATCCCAGGAGGAGAAAGTTTCTTTCTCCTGTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCTGTGAATCCCAGGAGGAGAAAGTTTCTTTCTCCTGTTTGGT  400

seq1  TTTCTCTTTCCATAGGACTGCAGGGATTACCCAAAAGGAGAGAGAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCCATAGGACTGCAGGGATTACCCAAAAGGAGAGAGAGAGAA  450

seq1  AAACAGCACAAATTCATCTCAAGTGGATCCTGCCAAATAATGCTAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCACAAATTCATCTCAAGTGGATCCTGCCAAATAATGCTAATATA  500

seq1  TCTTATTAAAACTTAAGGTATTAGCTAGACATTGTGGCACAAGCCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTAAAACTTAAGGTATTAGCTAGACATTGTGGCACAAGCCTTTAA  550

seq1  TACCAGCACTTGGAAGGCAGAGGCTGGCAGATGTTAGTGAGTTTGAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCACTTGGAAGGCAGAGGCTGGCAGATGTTAGTGAGTTTGAACTT  600

seq1  ACAGTCTGTTCTATACAGCAAGTTCTACAATAACTAGAGCTAAGTAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGTTCTATACAGCAAGTTCTACAATAACTAGAGCTAAGTAGAGA  650

seq1  CTCTGTCTCAAAGTACCCCAAACAAAACAAAAGAACCCCCCCCCCCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCAAAGTACCCCAAACAAAACAAAAGAACCCCCCCCCCCAACC  700

seq1  CAAGGTGTTATCTGGTAAGATGACACAGTAAGCTAAGGCCCTTTCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGTTATCTGGTAAGATGACACAGTAAGCTAAGGCCCTTTCTGCCA  750

seq1  AGACTGATGACTGCATTTTGATTTCTAGCAAACAGGTGGTGTAAAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATGACTGCATTTTGATTTCTAGCAAACAGGTGGTGTAAAGAGAG  800

seq1  ACACAAGTTCTTTAAGTTGTCTTTTGACCTCTATACACGTGCCATGACAT  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTC-TTAAGTTGTCTTTTGACCTCTATACACGTGCCATGACAT  849

seq1  GTGTGTGCATGCACACACACAGAATAAATAAATAAATTTAGGGGCTGAAT  900
      |||||||||||||||||||||||||||   |||||||||| |||||| ||
seq2  GTGTGTGCATGCACACACACAGAATAA--TAATAAATTTA-GGGCTG-AT  895

seq1  AGATGGCTTAGCAGTTAAGGGTTCATACTCCTTTTGCCAAGGTCCTGGAT  950
      ||||||||||||||||||||  ||||||||  |||||  |||| |||   
seq2  AGATGGCTTAGCAGTTAAGG--TCATACTC--TTTGC--AGGT-CTG--A  936

seq1  TTAGTTCACAGTACCCATGTGGAACAGCTCAAAACCACATGTAACTCCAG  1000
      |||| |||||||| |||||||||||||||||||  ||||||| ||| |||
seq2  TTAG-TCACAGTA-CCATGTGGAACAGCTCAAA--CACATGT-ACT-CAG  980

seq1  TTCTAGGAGGTCTGATGCCCTCTTCTGGTTTTGGCCAAGACCTGCACTCA  1050
       |||||   ||||||||||||| ||||||||  ||  ||| ||||| |||
seq2  -TCTAG--AGTCTGATGCCCTC-TCTGGTTT--GC--AGA-CTGCA-TCA  1020

seq1  TGCATCATGTGTAA  1064
      ||||||||||||||
seq2  TGCATCATGTGTAA  1034