BAC Information

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BAC

Clone NameB6Ng01-046H09
Chromosome10 (Build37)16 (Build37)
Map Location 104,053,903 - 104,054,36381,493,386 - 81,494,006
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H09.bB6Ng01-046H09.g
ACCDH871620DH871621
length879931
definitionDH871620|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H09, 5' end.DH871621|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(81,493,386 - 81,494,006)
sequence
gaattctcacccgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggaatgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttacaatagccagaagctggaaagaatccagat
gtccctcaacagaggaatggatacaaatatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaattcacgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaaa
gaactcaaatgaaatgtactcactgataagtggatattaacccagaaact
tagtatagcgcgatataaagtacaatatgtaaaacatatgaaactgaaga
agaacgaagaccaaagtgtggacactttgctcattcttagaattggaaac
aatcacccatgggaggagttacagagacaaagtttgggagctgagacaaa
aggatggtccatctagagactgccatatccagggatccatcccatattta
gcctccaagcgatgacaccattgcatacactagcaagcctttgtgcagga
tatagctgtccctgtgagactaggccagg
gaattctttgtttagctctgaaccccatttttattagaattatttgattt
tctagagtctaactttttgagttctttggatattttggatattagccctc
tattagacataagtatggtaacgatcttttcaaaatctctaggttgccat
tttgtccaattggcagtgtcctgggccttacagaagcttttcagcttcat
gaggtcccatttgtcaattgttggttttagagcctaagccattggtgttc
tcttcaggaaattttcccctgtgccgatatgttccagcctctttcccact
ttctcttctattagattcattgtatctggttttgtgttgagatccttgat
ctacttggacttcagctttgtacaaggtgataaaaatggatcactttgca
tttttctacatgcagacctccagttagaccagcaacattccttgaaaatg
ctctttattattattatttttttttactgcatgattttttcaaagatgaa
gtaaccatatatatgggattatttctgggtctttaatttttttcattgat
caacctgcctgtggctgtacaatatcatacagtatttatcactattgctc
tgtagtacagcttaaagtcaaagatggtgacagaaaactctagaacaaaa
acaaaatgccctagaagagtagatggcaagaaataaactcacaggtaaaa
tcaatcaattagaaacaaagagaactaaagaatcaaccaaactaagacct
gttcttggagaaaaaatcaaccagatgggtaaacccttaggcatctaagt
agagggcacagagacagtatctaatttgggtcatttatatagtctttgtc
cctacatctgcagcacagtagctgctaatatcagctctaacaacagcatg
ataaacatctgagtcattcagtcacatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-046H09.b_45_514 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||||||||||||||| || ||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATATT-TGTA  49

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||| ||||||| |||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGACATCTGGATTCTTTCCAGCTTCTGGCTATT  99

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
       ||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  GTAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCTGT  149

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  199

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  249

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCATTCCCACCAACAATGGAGGAGTGTTCCTCTTTC  299

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAAGTGCTTCTCTGCCATTCG  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      ||||||||| |||||||||||
seq2  GTATTCCTCGGGTGAGAATTC  470

seq1: chr16_81493386_81494006
seq2: B6Ng01-046H09.g_396_998

seq1  GTTTTGTGTTGAGATCCTTGATCTACTTGGACTTCAGCTTTGTACAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTTGAGATCCTTGATCTACTTGGACTTCAGCTTTGTACAAGGT  50

seq1  GATAAAAATGGATCACTTTGCATTTTTCTACATGCAGACCTCCAGTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAATGGATCACTTTGCATTTTTCTACATGCAGACCTCCAGTTAGA  100

seq1  CCAGCAACATTCCTTGAAAATGCTCTTTATTATTATTATTTTTTTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACATTCCTTGAAAATGCTCTTTATTATTATTATTTTTTTTTACT  150

seq1  GCATGATTTTTTCAAAGATGAAGTAACCATATATATGGGATTATTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTTTTTCAAAGATGAAGTAACCATATATATGGGATTATTTCTGG  200

seq1  GTCTTTAATTTTTTTCATTGATCAACCTGCCTGTGGCTGTACAATATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAATTTTTTTCATTGATCAACCTGCCTGTGGCTGTACAATATCAT  250

seq1  ACAGTATTTATCACTATTGCTCTGTAGTACAGCTTAAAGTCAAAGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTATCACTATTGCTCTGTAGTACAGCTTAAAGTCAAAGATGGT  300

seq1  GACAGAAAACTCTAGAACAAAAACAAAATGCCCTAGAAGAGTAGATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAACTCTAGAACAAAAACAAAATGCCCTAGAAGAGTAGATGGCA  350

seq1  AGAAATAAACTCACAGGTAAAATCAATCAATTAGAAACAAAGAGAACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAACTCACAGGTAAAATCAATCAATTAGAAACAAAGAGAACTAA  400

seq1  AGAATCAACCAAACTAAGACCTGTTCTTGGAG-AAAAATCAACCAGATGG  449
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAATCAACCAAACTAAGACCTGTTCTTGGAGAAAAAATCAACCAGATGG  450

seq1  GTAAACCCTTAGGCATCTAAGTAGAGGGCACAGAGACAGTATCTAATTTT  499
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAAACCCTTAGGCATCTAAGTAGAGGGCACAGAGACAGTATCTAA-TTT  499

seq1  GGGTCATTTATATAGTTCTTTGTCCCTACCATCTGCAGCACAAGTTAAGC  549
      ||||||||||||||| |||||||||||| |||||||||||| |||  |||
seq2  GGGTCATTTATATAG-TCTTTGTCCCTA-CATCTGCAGCAC-AGT--AGC  544

seq1  TTGCCTAAAATATCAGCTCTAAACAAACAGCAATGAATTAAACATCTGAG  599
       |||    ||||||||||||||   |||||| ||||  ||||||||||||
seq2  -TGC---TAATATCAGCTCTAA--CAACAGC-ATGA--TAAACATCTGAG  585

seq1  TCATTTTCAGGTTCACATCTGT  621
      |||  |||||  ||||||||||
seq2  TCA--TTCAG--TCACATCTGT  603