BAC Information

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BAC

Clone NameB6Ng01-046P12
Chromosome1 (Build37)10 (Build37)
Map Location 4,602,841 - 4,603,954104,054,218 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneXkr4, LOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853
Downstream geneLOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046P12.bB6Ng01-046P12.g
ACCDH871963DH871964
length1,098932
definitionDH871963|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P12, 5' end.DH871964|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,602,841 - 4,603,954)(104,054,218 - 104,054,363)
sequence
gaattcagttgtctcctggcaagaaacttactgaggcttccctttgtcaa
cttgggccagcagcatcttctgcacctctgactaattgtattttaatagg
cacacactgagaaaatgtttggatttagtggagaagagcacagctgccag
acttctgtagtatgggactaacatggctatgttgactggcctgtgacctt
cctgcagtttcttcactggctcagcttggagatagattcagaaatgggag
gaagtgggcatttctatatggcaggctggtgcacgtcacccctctcaagg
gtggctttatctgtagcacgtaggcttttaggataaaccggggtctccac
ttccctgctttgttagtgtgtgctagcatctgtcggagacatttgtttat
gtgtggcctagaagctgccagccactggggagggcagtctgcctgcctgg
gctttagcatgtcagtttagaggtggacttcagcatgtcagttcttcctt
ttgacattttatttatttatttattttttggctacttgggagcacattgt
tttaaaacaaagttaatagtgccagttaaaatgcctaagagataataatc
cccttaagcctccttaactccctgctccatttaccaagtaacccattcct
cttggaatgaacttctaaactatctctacacaggactcagaggtcttcac
ctctggccagctcctgcttcccgaggatgaggggctgtcagttcatgctg
agctgggttcttttgcatgtagaatagaacatgtgtctttcttttctgta
ctggtaatggacacagcttagaaaattgtcatttaaatctttgtaaaatt
ccgcaagcttgggcctggggaggtggctcagttcataagatcagtaagat
cactttccagtctaatgtcccaaattcaatccttagagccacatggtgac
atgagagaaccatcataaagtgtctctgatacaacatacatgtgctgtgg
catatctgcaccccactaaaataataaatagccaaaaaatttaaatgttt
attttgtacaagttctaagtatctgagattagcatgctaggtccatcc
gaattctcacctggggaataccaaatggctgagaagcaactgaaaaaaat
gttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccttgaga
ttccatctcacaccagtcagaatggctaagatcaaaaattcaggtgagag
acaaccggccaccttcctggtgagagcacaggagtctgccctgcctgaga
ggtttctgcctcaggcctcggacagaggccagccgtttcagggacaggcg
agagccagagagcttctgaggcggcgccatcttcggctccagacaactgg
ccacgttcctggtgagagcacaggggtccgcccggtttctgcctcaggcc
ccaggggcgggagcctccttggctccgggactccggggagggcaggctgc
atgggtgagggtgtggaatacagaggccagccgtttctgggacaggcgag
agccagagagcttctgaggcggcgctttcttcggccccagacaactggcc
accttcctggccaaagcaacacagctcctgggaaagatcctgttttgggc
cttcatcttcagccaggaggaggtccaaacaccagataactgtgcacctt
ccctgaaagaggagagcttgcctgcagagactgctctgaccactgaaact
cagaggagagagctagtctcccacgtctgctaatagagggtaacaaaatc
aagagaggaacaatctctaaacaaagacaactataacaactaactccaga
gattgccagatggcgaaaggtaaacgtaagaatcctactaacagaaacca
ggaccactcaccatcatcaaacccagaacgcccactttcacccagtccag
ggcatcctaacacacttgaaaggtagacctggatttaaagcatatctcat
gatgatggtaggaggacataaaagaaggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_4602841_4603954
seq2: B6Ng01-046P12.b_48_1145 (reverse)

seq1  GGATGGGACATAGCATGCTAAATCTCAGATACTTAGTACTTTGTACAAAA  50
      |||| |||| ||||||||| |||||||||||||||| || ||||||||||
seq2  GGAT-GGACCTAGCATGCT-AATCTCAGATACTTAGAAC-TTGTACAAAA  47

seq1  TAAAACATTTAAAATTTTATGGCTATTTATTTATTTTTAGGTGGGGTGCA  100
      | |||||||| ||||||| |||||||||| |||||||   ||||||||||
seq2  T-AAACATTT-AAATTTTTTGGCTATTTA-TTATTTT--AGTGGGGTGCA  92

seq1  GATATGCCACAGCACATGTATGTTGGTATCAGAGGACACCTTTAATGAAT  150
      |||||||||||||||||||||||| |||||||| |||||  || ||| ||
seq2  GATATGCCACAGCACATGTATGTT-GTATCAGA-GACAC--TTTATG-AT  137

seq1  GGTTTCTCTCATGTCACCATGTGGGCTCTAAGGATTGAATTTGGGACATT  200
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GG-TTCTCTCATGTCACCATGT-GGCTCTAAGGATTGAATTTGGGACATT  185

seq1  AGACTTGGAAAGTGATCTTACTGATCTTATGGACTGAGCCACCTCCCCAG  250
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAC-TGGAAAGTGATCTTACTGATCTTATGAACTGAGCCACCTCCCCAG  234

seq1  GCCCAAGCTTGCGG-ATTTTACAAAGATTTAAATGACAATTTTCTAAGCT  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCTTGCGGAATTTTACAAAGATTTAAATGACAATTTTCTAAGCT  284

seq1  GTGTCCATTACCAGTACAGAAAAAGAAAGACACATGTTCTATTCTACATG  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGTCCATTACCAGTACAG-AAAAGAAAGACACATGTTCTATTCTACATG  333

seq1  CAAAAGAACCCAGCTCAGCCTGAACTGACAGCCCCTCATCCTCGGGAAGC  399
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAAAGAACCCAGCTCAGCATGAACTGACAGCCCCTCATCCTCGGGAAGC  383

seq1  AGGAGCTGGCCAGAGGTGAAGACCTCTGAGTCCTGTGTAGAGATAGTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGGCCAGAGGTGAAGACCTCTGAGTCCTGTGTAGAGATAGTTTA  433

seq1  GAAGTTCATTCCAAGAGGAATGGGTTACTTGGTAAATGGAGCAGGGAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCATTCCAAGAGGAATGGGTTACTTGGTAAATGGAGCAGGGAGTT  483

seq1  AAGGAGGCTTAAGGGGATTATTATCTCTTAGGCATTTTAACTGGCACTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCTTAAGGGGATTATTATCTCTTAGGCATTTTAACTGGCACTAT  533

seq1  TAACTTTGTTTTAAAACAATGTGCTCCCAAGTAGCCAAAAAATAAATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGTTTTAAAACAATGTGCTCCCAAGTAGCCAAAAAATAAATAAA  583

seq1  TAAATAAAATGTCAAAAGGAAGAACTGACATGCTGAAGTCCACCTCTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATGTCAAAAGGAAGAACTGACATGCTGAAGTCCACCTCTAAA  633

seq1  CTGACATGCTAAAGCCCAGGCAGGCAGACTGCCCTCCCCAGTGGCTGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGCTAAAGCCCAGGCAGGCAGACTGCCCTCCCCAGTGGCTGGCA  683

seq1  GCTTCTAGGCCACACATAAACAAATGTCTCCGACAGATGCTAGCACACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGGCCACACATAAACAAATGTCTCCGACAGATGCTAGCACACAC  733

seq1  TAACAAAGCAGGGAAGTGGAGACCCCGGTTTATCCTAAAAGCCTACGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGCAGGGAAGTGGAGACCCCGGTTTATCCTAAAAGCCTACGTGC  783

seq1  TACAGATAAAGCCACCCTTGAGAGGGGTGACGTGCACCAGCCTGCCATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAAAGCCACCCTTGAGAGGGGTGACGTGCACCAGCCTGCCATAT  833

seq1  AGAAATGCCCACTTCCTCCCATTTCTGAATCTATCTCCAAGCTGAGCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCCCACTTCCTCCCATTTCTGAATCTATCTCCAAGCTGAGCCAG  883

seq1  TGAAGAAACTGCAGGAAGGTCACAGGCCAGTCAACATAGCCATGTTAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAACTGCAGGAAGGTCACAGGCCAGTCAACATAGCCATGTTAGTC  933

seq1  CCATACTACAGAAGTCTGGCAGCTGTGCTCTTCTCCACTAAATCCAAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTACAGAAGTCTGGCAGCTGTGCTCTTCTCCACTAAATCCAAACA  983

seq1  TTTTCTCAGTGTGTGCCTATTAAAATACAATTAGTCAGAGGTGCAGAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGTGTGTGCCTATTAAAATACAATTAGTCAGAGGTGCAGAAGA  1033

seq1  TGCTGCTGGCCCAAGTTGACAAAGGGAAGCCTCAGTAAGTTTCTTGCCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGGCCCAAGTTGACAAAGGGAAGCCTCAGTAAGTTTCTTGCCAG  1083

seq1  GAGACAACTGAATTC  1114
      |||||||||||||||
seq2  GAGACAACTGAATTC  1098

seq1: chr10_104054218_104054363
seq2: B6Ng01-046P12.g_68_214 (reverse)

seq1  TCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGATGGAATCT  50

seq1  CAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACA-T  99
      || |||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CAAGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGCTGAACATT  100

seq1  TTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  146
      |||||||| |||||||| |||||| |||||||| |||||||||||||
seq2  TTTTTCAGTTGCTTCTCAGCCATTTGGTATTCCCCAGGTGAGAATTC  147