BAC Information

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BAC

Clone NameB6Ng01-047A12
Chromosome10 (Build37)
Map Location 55,356,166 - 55,530,254
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041898, LOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047A12.bB6Ng01-047A12.g
ACCDH872011DH872012
length1,148813
definitionDH872011|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A12, 5' end.DH872012|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,529,100 - 55,530,254)(55,356,166 - 55,356,986)
sequence
gaattctcaggtgctatcctactagctgagtcaataaagcccccacttta
ttgagttgagctggagtctgcatgaatcctaggatcactttggactggaa
acatgtagactagattggctgtgaggctaatctgcttgtgacaatcagga
aatctgagtgtatcaggcagactaaaaagccaagtttgtgatttctggct
tatctgatgactgggacccatgaaggtcccaggtcaatcctgtggtgatc
tagggaccaggatcatatggggtcagttcagtttctgaatctactggata
tggtttggccttaggactgttggaatttgaagatattgacttgaggtctg
ggatgggcctgatacatgagcatatgagatttagtagtagagcttctgac
aatgatttatatattaatacagatcagtacataggactccaggcatccat
ctggagactggatatgaggctctgtggcaggatatatcagtctctgggat
ataacttaatgatgcaagtatagagactagcctatttctagtgtagggat
tgtgtctgccagtgccatcctggagatatgagtaatggtctgacattggc
tttgatcagattgaacattctattaatgctgtgcttgaatctggtctctg
tcaacagtttactcgagtcaggcttgaagctaggtccaaggcaagaccaa
ctgctcatatcatcctctagccttatatatctgctttgatttctttcctg
tgccatgttgtctagatttggaggatggataacatatggtttggctatag
tttggctgtgtcttccaatgtttcatgcactgggaacatggtatctatcg
tgtgcttttaagaattctgcatgccattagagacattggtctctaaagtg
atttagtagttttcaggactcttgcattaattctcctacaggagtgtccc
tgcttctgtccttccttctcctttcctgtcttcctatgtgatctctctct
cccccataaaatctttgcactgaggatatcagccatgtcaaactgttttc
caaatctaagagcaccctaatttggatgcatgacttccaagcctatgatt
taaatgagggttctttttcaggaaccttagtgtaaggcaggttattgt
gaattctacgtaactaaggggtcatgtcctattatttggcaatgtacccg
gttcattctgaggttgttccaggaggcccttatctcaaaaatgttcttgg
aacagtctttagttgggagggttcgaactctagggtgaggagttcaggaa
tgcattctggggtgaagagttcaggagtgttctgggaacaatctctagat
gggaggggtcgggctctggggtgaggaagagttcagtaattttttatctt
tattcttcaatagtttttccttcatcttattatattttcttttctcatat
ttgattgttattgtttagaagcctgtttttttttataatgagagacagaa
atggagcagattaagaggggagaggaagagaggtggagaagggctaggag
gaatagagggaggagaaacaataatcaggatatattttatgagaaaaaaa
cctatcttaaattctaacaaaagttaaaaagatacctttcttcacagaac
attgtccattactatacctatcaaaactaacttcaagcataaagccttgt
tcacatttaatattcttcagaaaatttcccaaggtatcttttatacacat
atggattttagattaaaacaacaacatttagtgtgtatttcgattttttt
tcatcttaacatacttcacgtgtttccccatatccacaatactgaccatg
tcagagttcagttttatgttttatgctggttcatgttctatgttcttccg
gatgaaatggtagcaagtgatttacatagcctgaatccatcaatcacatc
ctatgggtgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_55529100_55530254
seq2: B6Ng01-047A12.b_46_1193 (reverse)

seq1  ACAATAACCTGCCTTAACCTAAGGGTTCTTGAAAAAGAA-CTTCATTTAA  49
      ||||||||||||||||  |||| ||||| |||||||||| | ||||||||
seq2  ACAATAACCTGCCTTACACTAA-GGTTCCTGAAAAAGAACCCTCATTTAA  49

seq1  TTCATAGCTTTGGAAGTCATTGCATCCAAAATTAGGTGGCTCCATAGATT  99
       ||||||  |||||||||| ||||||| ||||||||  ||| | ||||||
seq2  ATCATAGGCTTGGAAGTCA-TGCATCC-AAATTAGGGTGCT-CTTAGATT  96

seq1  TGG-ACACAGTTTGACATGGCTGATATCCTCAGTGCAAAGATTTTATGTG  148
      ||| | |||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGAAAACAGTTTGACATGGCTGATATCCTCAGTGCAAAGATTTTATGGG  146

seq1  TGAGAGAGAGATCACATAGGAAGACAGGAAAGGAGAAGGAAGGACAGAAG  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGATCACATAGGAAGACAGGAAAGGAGAAGGAAGGACAGAAG  196

seq1  CAGGGAACAACTCCCTTGTAGGAGAATTAATGCAAGAGTCCCTGAAAACT  248
      ||||||   |||||  ||||||||||||||||||||||| ||||||||||
seq2  CAGGGA--CACTCC--TGTAGGAGAATTAATGCAAGAGT-CCTGAAAACT  241

seq1  ACTAAATCACTTTAGAGACCAATGTCTCTAATGGCATGCAGAATTCTTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCACTTTAGAGACCAATGTCTCTAATGGCATGCAGAATTCTTAA  291

seq1  AAGCACACGATAGATACCATGTTCCCAGTGCATGAAACATTGGAAGACAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACGATAGATACCATGTTCCCAGTGCATGAAACATTGGAAGACAC  341

seq1  AGCCAAACTATAGCCAAACCATATGTTATCCATCCTCCAAATCTAGACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACTATAGCCAAACCATATGTTATCCATCCTCCAAATCTAGACAA  391

seq1  CATGGCACAGGAAAGAAATCAAAGCAGATATATAAGGCTAGAGGATGATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACAGGAAAGAAATCAAAGCAGATATATAAGGCTAGAGGATGATA  441

seq1  TGAGCAGTTGGTCTTGCCTTGGACCTAGCTTCAAGCCTGACTCGAGTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTTGGTCTTGCCTTGGACCTAGCTTCAAGCCTGACTCGAGTAAA  491

seq1  CTGTTGACAGAGACCAGATTCAAGCACAGCATTAATAGAATGTTCAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACAGAGACCAGATTCAAGCACAGCATTAATAGAATGTTCAATCT  541

seq1  GATCAAAGCCAATGTCAGACCATTACTCATATCTCCAGGATGGCACTGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGCCAATGTCAGACCATTACTCATATCTCCAGGATGGCACTGGC  591

seq1  AGACACAATCCCTACACTAGAAATAGGCTAGTCTCTATACTTGCATCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAATCCCTACACTAGAAATAGGCTAGTCTCTATACTTGCATCATT  641

seq1  AAGTTATATCCCAGAGACTGATATATCCTGCCACAGAGCCTCATATCCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATATCCCAGAGACTGATATATCCTGCCACAGAGCCTCATATCCAG  691

seq1  TCTCCAGATGGATGCCTGGAGTCCTATGTACTGATCTGTATTAATATATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGATGGATGCCTGGAGTCCTATGTACTGATCTGTATTAATATATA  741

seq1  AATCATTGTCAGAAGCTCTACTACTAAATCTCATATGCTCATGTATCAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGTCAGAAGCTCTACTACTAAATCTCATATGCTCATGTATCAGG  791

seq1  CCCATCCCAGACCTCAAGTCAATATCTTCAAATTCCAACAGTCCTAAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCAGACCTCAAGTCAATATCTTCAAATTCCAACAGTCCTAAGGC  841

seq1  CAAACCATATCCAGTAGATTCAGAAACTGAACTGACCCCATATGATCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATATCCAGTAGATTCAGAAACTGAACTGACCCCATATGATCCTG  891

seq1  GTCCCTAGATCACCACAGGATTGACCTGGGACCTTCATGGGTCCCAGTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGATCACCACAGGATTGACCTGGGACCTTCATGGGTCCCAGTCA  941

seq1  TCAGATAAGCCAGAAATCACAAACTTGGCTTTTTAGTCTGCCTGATACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAAGCCAGAAATCACAAACTTGGCTTTTTAGTCTGCCTGATACAC  991

seq1  TCAGATTTCCTGATTGTCACAAGCAGATTAGCCTCACAGCCAATCTAGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTCCTGATTGTCACAAGCAGATTAGCCTCACAGCCAATCTAGTC  1041

seq1  TACATGTTTCCAGTCCAAAGTGATCCTAGGATTCATGCAGACTCCAGCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTCCAGTCCAAAGTGATCCTAGGATTCATGCAGACTCCAGCTC  1091

seq1  AACTCAATAAAGTGGGGGCTTTATTGACTCAGCTAGTAGGATAGCACCTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATAAAGTGGGGGCTTTATTGACTCAGCTAGTAGGATAGCACCTG  1141

seq1  AGAATTC  1155
      |||||||
seq2  AGAATTC  1148

seq1: chr10_55356166_55356986
seq2: B6Ng01-047A12.g_66_878

seq1  GAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCG  50

seq1  GTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGG  100

seq1  AACAGTCTTTAGTTGGGAGGGTTCGAACTCTAGGGTGAGGAGTTCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTTTAGTTGGGAGGGTTCGAACTCTAGGGTGAGGAGTTCAGGAA  150

seq1  TGCATTCTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGAT  200

seq1  GGGAGGGGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTT  250

seq1  TATTCTTCAATAGTTTTTCCTTCATCTTATTATATTTTCTTTTCTCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCAATAGTTTTTCCTTCATCTTATTATATTTTCTTTTCTCATAT  300

seq1  TTGATTGTTATTGTTTAGAAGCCTGTTTTTTTTTATAATGAGAGACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTTATTGTTTAGAAGCCTGTTTTTTTTTATAATGAGAGACAGAA  350

seq1  ATGGAGCAGATTAAGAGGGGAGAGGAAGAGAGGTGGAGAAGGGCTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAGATTAAGAGGGGAGAGGAAGAGAGGTGGAGAAGGGCTAGGAG  400

seq1  GAATAGAGGGAGGAGAAACAATAATCAGGATATATTTTATGAGAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAGGGAGGAGAAACAATAATCAGGATATATTTTATGAGAAAAAAA  450

seq1  CCTATCTTAAATTCTAACAAAAGTTAAAAAGATACCTTTCTTCACAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTAAATTCTAACAAAAGTTAAAAAGATACCTTTCTTCACAGAAC  500

seq1  ATTGTCCATTACTATACCTATCAAAACTAACTTCAAGCATAAAGCCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCATTACTATACCTATCAAAACTAACTTCAAGCATAAAGCCTTGT  550

seq1  TCACATTTAATATTCTTCAGAAAATTTCCCAAGGTATCTTTTATACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTAATATTCTTCAGAAAATTTCCCAAGGTATCTTTTATACACAT  600

seq1  ATGGATTTTAGATTAAAACAACAACATTTAGTGTGTATTTCGA-TTTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGGATTTTAGATTAAAACAACAACATTTAGTGTGTATTTCGATTTTTTT  650

seq1  TCATCTTAAACATACTTCACGTGTTTTCCCCATATCCACAATACTGACCA  699
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TCATCTT-AACATACTTCACGTG-TTTCCCCATATCCACAATACTGACCA  698

seq1  TGTCAAGAGTTCAAGTTTTATGTTTTTAATGCTGGTTCATGTTCTATGTT  749
      |||| ||||||| |||||||||||||  ||||||||||||||||||||||
seq2  TGTC-AGAGTTC-AGTTTTATGTTTT--ATGCTGGTTCATGTTCTATGTT  744

seq1  CTTCCCGGATGAAAATGGTAGTCAGGTGATTTTACATAGTCTGAATCATT  799
      ||| ||||||| ||||||||| || |||| ||||||||| |||||||  |
seq2  CTT-CCGGATG-AAATGGTAG-CAAGTGA-TTTACATAGCCTGAATCCAT  790

seq1  CAATCACATCATAT-GGTGAGAA  821
      |||||||||| ||| ||||||||
seq2  CAATCACATCCTATGGGTGAGAA  813