BAC Information

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BAC

Clone NameB6Ng01-048I19
Chromosome10 (Build37)
Map Location 9,566,306 - 9,674,819
singlet/doubletdoublet
Overlap geneStxbp5, LOC100039238
Upstream geneSash1, EG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417
Downstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048I19.bB6Ng01-048I19.g
ACCDH873075DH873076
length1,058188
definitionDH873075|Mus musculus domesticus DNA, BAC clone: B6Ng01-048I19, 5' end.DH873076|Mus musculus domesticus DNA, BAC clone: B6Ng01-048I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,566,306 - 9,566,918)(9,674,632 - 9,674,819)
sequence
gaattctttttaaaaaactttattgagtcttggtgagtttcataccacac
atcccaaccctactcatatctcttgtcactttgtatccaccctctacctt
gcaacctcccccaaataataataaaaattaaaataaacaaaacattaaaa
acctcatcgcagaagatgagtataccctttgtccacacttctttcactgt
aaatgcggtctagttagggcctctggctccgatgcaccatcaattctgga
tcttcagcagggcaactcctgttgtcaccctgtgtcatggagcttctgca
gctttggatctgtagcatcagcccttttacatgctccagaagttcacaga
tgagacagatgctggggagaccctactcaaagccctggatctagatctga
atctgaactggtcagcctgccagctttcctgcacccacaccaccagcatt
ctcagctagcagcagcaggggctagagccagctctccacttctcatgcct
gtgtcccacatccacagggccagctccacttcaccacacaggtcagctgc
aaggaatgctctcacaagtgctgccgctatcgagaggggtggagccagct
ctgcacagccccgggatacagcatctctcaggtggcagtcatgagcaggg
acatctgcatagtcttccgcagtaatatgagccagggacattgacaatga
tttctgctgctgcttggccatggacccagatgtggccctcagtggcagca
tgggctgggactctactctggcttcaggtggcagggcaggccactcacag
cagagcacgcctctccagcgttgagcctctagctccatctctctcaaagt
gttcagcctccctttctctctcatatgtccactacactcatgcacatcat
agtggctcccgctgtgggagggccagtggctggtgggcctctggtgtctt
cctcctgctggagctgtgtgacatggtgttgggagccgccccccattccc
gtcacagatggcgctgactcctggtgtctaagtggtaacaaataactgcg
cagtgcca

ctctttcccctttttatcctctttgaccaaaggcagacacagctcttaca
acttttcaaaactactgccccatctgagtctccttcccatcacaaaagaa
aaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagagggagggagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9566306_9566918
seq2: B6Ng01-048I19.b_492_1096

seq1  AGCTAGCAGCAGCAGGGGCTAGAGCCAGCTCTCCACTTCTCATGCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAGCAGCAGGGGCTAGAGCCAGCTCTCCACTTCTCATGCCTGTG  50

seq1  TCCCACATCCACAGGGCCAGCTCCACTTCACCACACAGGTCAGCTGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATCCACAGGGCCAGCTCCACTTCACCACACAGGTCAGCTGCAAG  100

seq1  GAATGCTCTCACAAGTGCTGCCGCTATCGAGAGGGGTGGAGCCAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCTCACAAGTGCTGCCGCTATCGAGAGGGGTGGAGCCAGCTCTG  150

seq1  CACAGCCCCGGGATACAGCATCTCTCAGGTGGCAGTCATGAGCAGGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCCGGGATACAGCATCTCTCAGGTGGCAGTCATGAGCAGGGACA  200

seq1  TCTGCATAGTCTTCCGCAGTAATATGAGCCAGGGACATTGACAATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAGTCTTCCGCAGTAATATGAGCCAGGGACATTGACAATGATTT  250

seq1  CTGCTGCTGCTTGGCCATGGACCCAGATGTGGCCCTCAGTGGCAGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCTTGGCCATGGACCCAGATGTGGCCCTCAGTGGCAGCATGG  300

seq1  GCTGGGACTCTACTCTGGCTTCAGGTGGCAGGGCAGGCCACTCACAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACTCTACTCTGGCTTCAGGTGGCAGGGCAGGCCACTCACAGCAG  350

seq1  AGCACGCCTCTCCAGCGTTGAGCCTCTAGCTCCATCTCTCTCAAAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCCTCTCCAGCGTTGAGCCTCTAGCTCCATCTCTCTCAAAGTGTT  400

seq1  CAGCCTCCCTTTCTCTCTCATATGTCCACTACACTCATGCACATCATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCCTTTCTCTCTCATATGTCCACTACACTCATGCACATCATAGT  450

seq1  GGCTCCCGCTGTGGGAGGGCCAAGTGGCTGGTGGGCCTCTGGTGTCTTCC  500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCTCCCGCTGTGGGAGGGCC-AGTGGCTGGTGGGCCTCTGGTGTCTTCC  499

seq1  TCCTGCTGGAGCTGTGTGACATGGTGTTGGGAGCCGCCCCCACATTCGCC  550
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  TCCTGCTGGAGCTGTGTGACATGGTGTTGGGAGCCGCCCCC-CATTC-CC  547

seq1  GTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATC  600
      ||||| ||||||||||||| |||||   |||||||||| ||||||||| |
seq2  GTCAC-AGATGGCGCTGAC-TCCTGGTGTCTAAGTGGT-AACAAATAA-C  593

seq1  TGCGCATGTGCCA  613
      |||||| ||||||
seq2  TGCGCA-GTGCCA  605


seq1: chr10_9674632_9674819
seq2: B6Ng01-048I19.g_74_261 (reverse)

seq1  CCTCCCTCCCTCCCTCCCTCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTCCCTCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTT  50

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTTGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTTGTGAT  100

seq1  GGGAAGGAGACTCAGATGGGGCAGTAGTTTTGAAAAGTTGTAAGAGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGACTCAGATGGGGCAGTAGTTTTGAAAAGTTGTAAGAGCTGT  150

seq1  GTCTGCCTTTGGTCAAAGAGGATAAAAAGGGGAAAGAG  188
      ||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTTTGGTCAAAGAGGATAAAAAGGGGAAAGAG  188


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