BAC Information

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BAC

Clone NameB6Ng01-048N08
Chromosome10 (Build37)5 (Build37)
Map Location 104,053,911 - 104,054,32914,960,898 - 14,961,736
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048N08.bB6Ng01-048N08.g
ACCDH873274DH873275
length453848
definitionDH873274|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N08, 5' end.DH873275|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,911 - 104,054,329)(14,960,898 - 14,961,736)
sequence
gaattctccctgaggatacggagtggctaatagcacctcataaaatgtcc
acatccttaatcatcagggaaatgcaaatcaaaacaacactgagagtcca
catcacaccactcaaaatggctaacatcaagaattcaggtgacagcagat
gctggcgtggatgtggagatagaggaacactcctccattgttggtgggat
tgcctgcttgtacaaccactctggaaatcagtctggcggttcctctgaaa
attggacatagtactaccggaggatccagcaatacctctcctgggcatat
atccggaagatgtcccaaccgggaagaagaatacatgctccactatgttc
ttatcagccttgtttataataccctgaatctggaaagaacccgtatgccc
ctcaacagatgaatgtatacagaaaatgtggtacatctacaccatggagt
act
gaattcccatggttttagatttttcaaatttttcattttataaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaataccact
tcaagcacactggaaattctatgatggtgctaacaatttcaggaatttcc
aacgggacgcatgacaagaaaaatccatatagtacaagtcttaggtgtta
gctgaattttcaaatcaaaaagcaaagagaagaatttacattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
ggtacatcaggatattaggccatgcaatcgtatacggagatacccaagct
acatagtacttcaagtgttgctatcatatatgtctaattgatattttgca
gattaatgccaagtaaaatcaaaatatagtctcctacccattacatcgta
aaacaccatgatctatccacaggtgccgtttcacagcaaaaggaaaacag
taggtattaattgaacactgaactgcttctcttctaagaaatgaccaccg
atagatagattcctggatacttatactttcactttgaaatttcaagggga
ttaattttgtttttctacataaaaaaaccaatctcgctttggttagggaa
aaaacgctcattttccacatttaaaaagaacgttgggccgggtgtggtgg
ccacacgtccttaatcccagccctgggtagcagaggaagggcaatttctg
atgtgaagccagccttgtcctgcaagtaagtccaagaacgcctggcttct
gaaaaaccccgtctgaaaaccgaaataagcctgcttgtctctggcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053911_104054329
seq2: B6Ng01-048N08.b_75_492 (reverse)

seq1  CTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGG  50
      |||||| ||||| ||||||||||||||||||||  |||| ||||||||||
seq2  CTCCATGGTGTAGATGTACCACATTTTCTGTATACATTCATCTGTTGAGG  50

seq1  GGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATG  100
      |||||  ||||||||||||| | | || ||||||||| ||||||| || |
seq2  GGCATACGGGTTCTTTCCAGATTCAGGGTATTATAAACAAGGCTGATAAG  100

seq1  AATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATA  150
      || |||||||||||||| | |||||| ||||||||| ||||||| |||||
seq2  AACATAGTGGAGCATGTATTCTTCTTCCCGGTTGGGACATCTTCCGGATA  150

seq1  TATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  200

seq1  TTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAA  250
      ||| || |||||||||||| ||||||||||||||||||||||||  ||||
seq2  TTCAGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCAGGCAA  250

seq1  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCA  300
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TCCCACCAACAATGGAGGAGTGTTCCTCTATCTCCACATCCACGCCAGCA  300

seq1  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  350
      |||||||||||||||||| ||||| ||||||||| ||| |||||||| ||
seq2  TCTGCTGTCACCTGAATTCTTGATGTTAGCCATTTTGAGTGGTGTGATGT  350

seq1  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  400
      ||| |||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GGACTCTCAGTGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATG-T  399

seq1  GAACATTTTTTCAGGTGCT  419
      | ||||||| | |||||||
seq2  GGACATTTTATGAGGTGCT  418

seq1: chr5_14960898_14961736
seq2: B6Ng01-048N08.g_79_912

seq1  TTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGAGAGAATCATTGTCT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAGATTTTTCAAATTTTTCATTTTATAAAAAAAGAGAGAATCATTGTCT  50

seq1  ACAAATTCTTTTATGTCCAACTATGCAAATACAACTTCAAGCACACTGGA  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACAAATTCTTTTATGTCCAACTATGCAAATACCACTTCAAGCACACTGGA  100

seq1  AATTCTATGATGGTGCTAACAATTTCAGGAATTTCCAACAGGACGCATAA  150
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  AATTCTATGATGGTGCTAACAATTTCAGGAATTTCCAACGGGACGCATGA  150

seq1  CAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTAGCTGAATTTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTAGCTGAATTTTCAAA  200

seq1  TCAAAAAGCAAAGAGAAGAATTTACATTTTCAGTAACTTTAGGATCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGCAAAGAGAAGAATTTACATTTTCAGTAACTTTAGGATCTGTG  250

seq1  AGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCAGGTACATCAGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCAGGTACATCAGGATA  300

seq1  TTAGGCCATGCAATCGTATACGGAGATACAGAAGCTACATAGTACTTCAA  350
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TTAGGCCATGCAATCGTATACGGAGATACCCAAGCTACATAGTACTTCAA  350

seq1  GTGTTGCTATCATATATGTCTAATTGATATTTTACAGATTAATGCCAAGT  400
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGTTGCTATCATATATGTCTAATTGATATTTTGCAGATTAATGCCAAGT  400

seq1  AAAATCAAAATATAGTCTCCTACCCATTACATCTTAAAACACAATGATCT  450
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  AAAATCAAAATATAGTCTCCTACCCATTACATCGTAAAACACCATGATCT  450

seq1  ATCAACAGTTGCCATTTCACAGCAAAAGGAAAGCAGTAGGTATAAATTGA  500
      ||| |||| |||| |||||||||||||||||| |||||||||| ||||||
seq2  ATCCACAGGTGCCGTTTCACAGCAAAAGGAAAACAGTAGGTATTAATTGA  500

seq1  ACACAGAACTGCTTCTCTTCTAAGAAATGAACACAGATATATAGATACAT  550
      |||| ||||||||||||||||||||||||| ||| |||| |||||| | |
seq2  ACACTGAACTGCTTCTCTTCTAAGAAATGACCACCGATAGATAGATTCCT  550

seq1  GTATACTTATACATTCTCTTTGAAA-TTCAAGGTGATTAA-TTTGCTTTA  598
      | |||||||||| ||| |||||||| ||||||| |||||| |||| ||| 
seq2  GGATACTTATACTTTCACTTTGAAATTTCAAGGGGATTAATTTTGTTTTT  600

seq1  CTACCATATAAAAA-CAATCTCGCTGTGGTCAGGGAAAAAA-GCTCATTT  646
      ||| |||| ||||| |||||||||| |||| |||||||||| ||||||||
seq2  CTA-CATAAAAAAACCAATCTCGCTTTGGTTAGGGAAAAAACGCTCATTT  649

seq1  TCCACATTTAAAAAGTACGTT-GGCCGGGTGTGGTGG-CACACGTCTTTA  694
      ||||||||||||||| ||||| ||||||||||||||| |||||||| |||
seq2  TCCACATTTAAAAAGAACGTTGGGCCGGGTGTGGTGGCCACACGTCCTTA  699

seq1  ATCCCAGCTCTGGGTAGGCAGAGGCAGGCAGATTTCTGAGTTGGAGGCCA  744
      |||||||| ||||||| ||||||| |||   |||||||| |  || ||||
seq2  ATCCCAGCCCTGGGTA-GCAGAGGAAGGGCAATTTCTGA-TGTGAAGCCA  747

seq1  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  794
      |||| |||    |||| || |||| ||  ||| ||    | | || ||||
seq2  GCCTTGTCCTGCAAGTAAG-TCCAAGAACGCCTGG---CTTCTGAAAAAC  793

seq1  CCTGTCTAGAAAAACCAAAAAAAAGTACACATTGTCTCTGGCAAG  839
      || |||| ||||| | ||| ||   | |   ||||||||||||||
seq2  CCCGTCT-GAAAACCGAAATAAGCCTGC---TTGTCTCTGGCAAG  834