BAC Information

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BAC

Clone NameB6Ng01-049A02
Chromosome10 (Build37)
Map Location 104,449,091 - 104,594,179
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
Downstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A02.bB6Ng01-049A02.g
ACCDH873392DH873393
length784738
definitionDH873392|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A02, 5' end.DH873393|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,593,392 - 104,594,179)(104,449,091 - 104,449,824)
sequence
gaattcaaaagaaccaatgttttcttttgcaaagtgacttcatcctcacc
ataagtgcttgtgctccaaggactggtgagagaatttcttggaaaccaaa
gaacatttagtaatgtagagtgtatgtagatatttttttgtatttaattt
atgaagtcctttgagtaagtaaattaaaaattagtgtgttaatatttcac
attttgttaatttcaaagagaatttatttcatgaccaagtttgtaattta
aacaatgtgatttgtgtgtgtgtgtgaatgttttagttatatctatgcca
agcaaacaaattgaacatttttattggatttcgatctgaagaatatcaag
taatagaatgatcacttcttcatgtagtcagacaacttggggtctagtcc
aagccctgacacaactttatcctcaattacttggtctggaccctcatttc
ctaaccagtgaaaagaggggttttattagatgattgtccatacgctttgc
agatattaatctcagtgtttgtcatcgacacagctgtttggcagcacaaa
aggggagtaaagatcatatgattattatattgagaatattcataaatgat
tatatagtacaatttggaaatgtacaagttcagtcctggcattttagttc
ctagcattttactcatgcatgcatgcaaacttgccaccagtgatgagtat
cataagtgtgtgtaaccactatgaagaagacgatgtttcacacctcaggg
gtcacacggctgatggaaaataagggatacccac
gaattcagtattctgctaacagccttcagttgaagatgtagaactctcag
ccactcctgcatcatgcttgcctggatgctgccacacttccaccttgaag
ataatggacagaacctctgaacctgtaatccagcccaaattaaatgttgt
ccttatgagagttgacttggtcatggtgtctcttcacagcagtaaaactc
taatgaggacactttaacacagtgaatttgagagggaatgaagtacagaa
aagcctgtctcaaattaaataaacaaataaataaaatataaacattttgt
cattaaaaagagctcaattcctttacaagccaaaagaaaagagaaacttt
ttgtggacctatttgaaaaaaaaaataggacctatttagtgaaaatcaaa
ttagaatctcattagctagctctttagttggcaaatgattagcccctagg
cattattgatggatgcctgaatctacttctccctcccatgcaatatgtta
ttgcactctggcaacaatcacataatttcaactcagaaagttcctttttc
cgctgattgggaaagagagtgattaatattagttattagtctacatataa
ttatgcatatattctacagtgccaggccttagatggaacatataagggca
gcataaagtgaacaaagagtatgatatttttcttgtgataagaccatgaa
tattttgactctgttaactagacaatctgatgaaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104593392_104594179
seq2: B6Ng01-049A02.b_33_816 (reverse)

seq1  GTGGGTATGCCTTTTATCTTCCATCCAGCAGTGTGACCCCTTGAGTGTTG  50
      |||||||| ||  |||| |||||| |||| |||||||||| ||||   ||
seq2  GTGGGTATCCC--TTATTTTCCAT-CAGCCGTGTGACCCC-TGAGGTGTG  46

seq1  AAACATCGTCTTCTTCATCGTCGTTTCCCACACTTTTGATACTCATCACT  100
      |||||||||||||||||| || ||| | ||||||| ||||||||||||||
seq2  AAACATCGTCTTCTTCATAGTGGTTACACACACTTATGATACTCATCACT  96

seq1  GGTGGCAAGTTTGCATGCATGCATGAGT-AAATGCTAGGAACTTAAATGC  149
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  GGTGGCAAGTTTGCATGCATGCATGAGTAAAATGCTAGGAACTAAAATGC  146

seq1  CAGGACTGAACTTGTACATTTCC-AATTGTACTATATAATCATATTATGA  198
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  CAGGACTGAACTTGTACATTTCCAAATTGTACTATATAATCAT-TTATGA  195

seq1  ATATTCTCAATATTAATAATCATATGATCTTTACTCCCCTTTTGTGCTGC  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCAATA-TAATAATCATATGATCTTTACTCCCCTTTTGTGCTGC  244

seq1  CAAACAGCTGTGTCGATGACAAACACTGAGATTAATATCTGCAAAGCGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCTGTGTCGATGACAAACACTGAGATTAATATCTGCAAAGCGTA  294

seq1  TGGACAATCATCTAATAAAACCCCTCTTTTCACTGGTTAGGAAATGAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATCATCTAATAAAACCCCTCTTTTCACTGGTTAGGAAATGAGGG  344

seq1  TCCAGACCAAGTAATTGAGGATAAAGTTGTGTCAGGGCTTGGACTAGACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCAAGTAATTGAGGATAAAGTTGTGTCAGGGCTTGGACTAGACC  394

seq1  CCAAGTTGTCTGACTACATGAAGAAGTGATCATTCTATTACTTGATATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTGTCTGACTACATGAAGAAGTGATCATTCTATTACTTGATATTC  444

seq1  TTCAGATCGAAATCCAATAAAAATGTTCAATTTGTTTGCTTGGCATAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCGAAATCCAATAAAAATGTTCAATTTGTTTGCTTGGCATAGAT  494

seq1  ATAACTAAAACATTCACACACACACACAAATCACATTGTTTAAATTACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAAACATTCACACACACACACAAATCACATTGTTTAAATTACAA  544

seq1  ACTTGGTCATGAAATAAATTCTCTTTGAAATTAACAAAATGTGAAATATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCATGAAATAAATTCTCTTTGAAATTAACAAAATGTGAAATATT  594

seq1  AACACACTAATTTTTAATTTACTTACTCAAAGGACTTCATAAATTAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTAATTTTTAATTTACTTACTCAAAGGACTTCATAAATTAAATA  644

seq1  CAAAAAAATATCTACATACACTCTACATTACTAAATGTTCTTTGGTTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATATCTACATACACTCTACATTACTAAATGTTCTTTGGTTTCC  694

seq1  AAGAAATTCTCTCACCAGTCCTTGGAGCACAAGCACTTATGGTGAGGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTCTCTCACCAGTCCTTGGAGCACAAGCACTTATGGTGAGGATG  744

seq1  AAGTCACTTTGCAAAAGAAAACATTGGTTCTTTTGAATTC  788
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTTGCAAAAGAAAACATTGGTTCTTTTGAATTC  784

seq1: chr10_104449091_104449824
seq2: B6Ng01-049A02.g_67_804

seq1  GAATTCAGTATTCTGCTAACAGCCTTCAGTTGAAGATGTAGAACTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTCTGCTAACAGCCTTCAGTTGAAGATGTAGAACTCTCAG  50

seq1  CCACTCCTGCATCATGCTTGCCTGGATGCTGCCACACTTCCACCTTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTGCATCATGCTTGCCTGGATGCTGCCACACTTCCACCTTGAAG  100

seq1  ATAATGGACAGAACCTCTGAACCTGTAATCCAGCCCAAATTAAATGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGACAGAACCTCTGAACCTGTAATCCAGCCCAAATTAAATGTTGT  150

seq1  CCTTATGAGAGTTGACTTGGTCATGGTGTCTCTTCACAGCAGTAAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGAGAGTTGACTTGGTCATGGTGTCTCTTCACAGCAGTAAAACTC  200

seq1  TAATGAGGACACTTTAACACAGTGAATTTGAGAGGGAATGAAGTACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGACACTTTAACACAGTGAATTTGAGAGGGAATGAAGTACAGAA  250

seq1  AAGCCTGTCTCAAATTAAATAAACAAATAAATAAAATATAAACATTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCTCAAATTAAATAAACAAATAAATAAAATATAAACATTTTGT  300

seq1  CATTAAAAAGAGCTCAATTCCTTTACAAGCCAAAAGAAAAGAGAAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAAGAGCTCAATTCCTTTACAAGCCAAAAGAAAAGAGAAACTTT  350

seq1  TTGTGGACCTATTTGAAAAAAAAAATAGGACCTATTTAGTGAAAATCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGACCTATTTGAAAAAAAAAATAGGACCTATTTAGTGAAAATCAAA  400

seq1  TTAGAATCTCATTAGCTAGCTCTTTAGTTGGCAAATGATTAGCCCCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCTCATTAGCTAGCTCTTTAGTTGGCAAATGATTAGCCCCTAGG  450

seq1  CATTATTGATGGATGCCTGAATCTACTTCTCCCTCCCATGCAATATGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGATGGATGCCTGAATCTACTTCTCCCTCCCATGCAATATGTTA  500

seq1  TTGCACTCTGGCAACAATCACATAATTTCAACTCAGAAAGTTCC-TTTTC  549
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGCACTCTGGCAACAATCACATAATTTCAACTCAGAAAGTTCCTTTTTC  550

seq1  CGCTGATT-GGAAAGAGAGTGATTAATATTAGTTATTAGTCTACATATAA  598
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGATTGGGAAAGAGAGTGATTAATATTAGTTATTAGTCTACATATAA  600

seq1  TTATGCATATATTCTACAGTGCCAGGCCTTAGATGGAACATATAAGGGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATATATTCTACAGTGCCAGGCCTTAGATGGAACATATAAGGGCA  650

seq1  GCATAAAAGTGAACAAAGAGTATGATATTTTTCTTGTGATAAGAACATGA  698
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCAT-AAAGTGAACAAAGAGTATGATATTTTTCTTGTGATAAGACCATGA  699

seq1  ATA-TTTGACTCTG-TAAC-AGACAATCTGATGAAATAG  734
      ||| |||||||||| |||| |||||||||||||||||||
seq2  ATATTTTGACTCTGTTAACTAGACAATCTGATGAAATAG  738