BAC Information

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BAC

Clone NameB6Ng01-050D12
Chromosome10 (Build37)
Map Location 94,274,144 - 94,275,419
singlet/doubletsinglet
Overlap genePlxnc1
Upstream geneUsp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
Downstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050D12.bB6Ng01-050D12.g
ACCDH874232DH874233
length1,2471,113
definitionDH874232|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D12, 5' end.DH874233|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttgtgggctctattggtatactgcaaaggagagcatatgtgt
gagcaagctcacagggctccgtttctctcaaatgttcatcaacattttca
agttgagctcggcgcaaccctcccaggagactgctgtgggattttagaac
agataatgggacaggaaagaagagtcgaattgtggcggtgacagacagcg
taacaaggttcatcttcccttcatgtgcagttgtaggcctccactaagca
ggcaattaaaatcctcccccaccaatcaaacctcctgctaaaaccattga
gaaaagcctagaggcaggcctgggaaatttgggggaggccatgcaaatgt
gtagcaacttcagtgcctgcttcgaagaaagcaggctgcttaggcactgc
tctgtgccagggttttgtttccttgcatggcctggagtactcaacagctt
gaaacgggtttaactcctttgtttagatataagcagaaggggcaacccca
tctaggggactggtgcctgacccaaaccatcagcttccttgacttgaata
ttacctcgcaagtgtgtggctctgaccacaaagagcatgggcacacccaa
cctaataaccacaggaaaacagcccagcagcattctctttgccaccggaa
agtccacaggagtgtctgcaagggtttgtgccaaccaggtgtccctccct
caaccccgaagctgggaggcaaaggtagaacaagctggtggcattgtgtc
cagattagcagaaagcatatatgcatagaatgttaccacctaggaatcgg
aaatagtagggcctgacctaactgggaaagactatctaagacagcagagc
catttgagttgccttgtggcttgttacagagccattgacaccagatttgg
ggggtgacaggagagatgagacagggtctcactgttgtagccctagctga
cctagaactcactattgaatgcaggctaaccttgaactgtgaggatcctc
ctgcctcagcctccttgaatggtgagcttatacgcatgagctattaccat
atctggccattgctagaattaaaaaaaaatttttatttattctggttgtg
agtgccatgttctcatgttgggcgaaggaagacaacatgaagtgtctgcc
tctctactggtggtctgggacgagactcaaaatgtcatgttggacgggtc
tttacaacttgaccattcccagctcccatggctagtttaagagaaat
gaattctcacctgaggaataccgagtggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaaccaaagcaaccttcagat
tccacgtcacaccagtcagtatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatatggagaaagaggaacactcctccattgttggtg
ggattgcaaacttgtacaaccactctggaaatcagcctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacttggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgcactcactgataagtggttattagcccagaaac
ttagaatacccaagatacaagatacaatctgcaaaacacatgaaattcaa
gaagaacgaagactaaaatgtggacattttgcccctttttagaaatggga
acaaaacacccatggaaggagttacagagataatgtttggagctgagacg
aaaggatggaccatctagagactgccatacccggggatccatcccatatc
agcctccaaaccaccattgcatacacagcaagatttgctgaaagactcag
atatagctgtctctgtgagctatgctgggcctagcaaaaacagaagtgat
gctcacagtcagtatagatggatcacaggccccatgagagctagagaagt
acccagagctagggtctcacctatagtgacacattgactacagtaccccc
agagctctgttctagctgcaatgtatcgaagatgctagtcagcatcatga
aagaagtcatctgtcatgcaactttattcctatacggaaaccaggccaaa
gtggggggggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_94274144_94275419
seq2: B6Ng01-050D12.b_48_1294 (reverse)

seq1  ATTTCTCTTTTTAAAAAACTAGCAATGGGAGCTGGGGAGATGACTCAGTT  50
      |||||||||      |||||||| ||||||||||||   |||  |||  |
seq2  ATTTCTCTT------AAACTAGCCATGGGAGCTGGG--AATG-GTCAAGT  41

seq1  GGTAAAGACACCTGTCTCCAAACATGACAATCTGAGTTCTGTTCCCAGGA  100
       |||||||| | |     | ||||||||| | |||| |||  ||||| ||
seq2  TGTAAAGACCCGT-----CCAACATGACATTTTGAG-TCTCGTCCCA-GA  84

seq1  CTCACACAGTAGA-AGGCAAGAACCAACTGTCATGGTTGTCTTCTGTCTG  149
      | ||| ||||||| |||| |||    ||| |||| |||||||||  || |
seq2  C-CAC-CAGTAGAGAGGC-AGA---CACT-TCAT-GTTGTCTTCCTTC-G  125

seq1  CCCAACAATGAGCACATGTGCACTCACATACACGATAAATAAAAATTATT  199
      |||||| ||||| ||||| |||||||||  ||  ||||||||||||  ||
seq2  CCCAAC-ATGAGAACATG-GCACTCACAACCAGAATAAATAAAAAT--TT  171

seq1  TTTTTTAAATCTAGCAATGGCCAGATATGGTAATAGCTCATGCGTATAAG  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTCTAGCAATGGCCAGATATGGTAATAGCTCATGCGTATAAG  221

seq1  CTCAACATTCAA-GAGGCTGAGGCAGGAGGATCATCACAGGTTCAAGGTT  298
      |||| ||||||| |||||||||||||||||||| ||||| ||||||||||
seq2  CTCACCATTCAAGGAGGCTGAGGCAGGAGGATCCTCACA-GTTCAAGGTT  270

seq1  AGCCTGCATTCAATAGTGAGTTCTAGGTCAGCTAGGGCTACAACAGTGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCATTCAATAGTGAGTTCTAGGTCAGCTAGGGCTACAACAGTGAG  320

seq1  ACCCTGTCTCATCTCTTCCTGTCACCCCCCAAATCTGGTGTCAATGGCTC  398
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCATCTC-TCCTGTCACCCCCCAAATCTGGTGTCAATGGCTC  369

seq1  TGTAACAAGCCACAAGGCAACTCAAATGGCTCTGCTGTCTTAGATAGTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAGCCACAAGGCAACTCAAATGGCTCTGCTGTCTTAGATAGTCT  419

seq1  TTCCCAGTTAGGTCAGGCCCTACTATTTCCGATTCCTAGGTGGTAACATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTTAGGTCAGGCCCTACTATTTCCGATTCCTAGGTGGTAACATT  469

seq1  CTATGCATATATGCTTTCTGCTAATCTGGACACAATGCCACCAGCTTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCATATATGCTTTCTGCTAATCTGGACACAATGCCACCAGCTTGTT  519

seq1  CTACCTTTGCCTCCCAGCTTCGGGGTTGAGGGAGGGACACCTGGTTGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTGCCTCCCAGCTTCGGGGTTGAGGGAGGGACACCTGGTTGGCA  569

seq1  CAAACCCTTGCAGACACTCCTGTGGACTTTCCGGTGGCAAAGAGAATGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTTGCAGACACTCCTGTGGACTTTCCGGTGGCAAAGAGAATGCT  619

seq1  GCTGGGCTGTTTTCCTGTGGTTATTAGGTTGGGTGTGCCCATGCTCTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTGTTTTCCTGTGGTTATTAGGTTGGGTGTGCCCATGCTCTTTG  669

seq1  TGGTCAGAGCCACACACTTGCGAGGTAATATTCAAGTCAAGGAAGCTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAGCCACACACTTGCGAGGTAATATTCAAGTCAAGGAAGCTGAT  719

seq1  GGTTTGGGTCAGGCACCAGTCCCCTAGATGGGGTTGCCCCTTCTGCTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGTCAGGCACCAGTCCCCTAGATGGGGTTGCCCCTTCTGCTTAT  769

seq1  ATCTAAACAAAGGAGTTAAACCCGTTTCAAGCTGTTGAGTACTCCAGGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAAAGGAGTTAAACCCGTTTCAAGCTGTTGAGTACTCCAGGCC  819

seq1  ATGCAAGGAAACAAAACCCTGGCACAGAGCAGTGCCTAAGCAGCCTGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGAAACAAAACCCTGGCACAGAGCAGTGCCTAAGCAGCCTGCTT  869

seq1  TCTTCGAAGCAGGCACTGAAGTTGCTACACATTTGCATGGCCTCCCCCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGAAGCAGGCACTGAAGTTGCTACACATTTGCATGGCCTCCCCCAA  919

seq1  ATTTCCCAGGCCTGCCTCTAGGCTTTTCTCAATGGTTTTAGCAGGAGGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAGGCCTGCCTCTAGGCTTTTCTCAATGGTTTTAGCAGGAGGTT  969

seq1  TGATTGGTGGGGGAGGATTTTAATTGCCTGCTTAGTGGAGGCCTACAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTGGGGGAGGATTTTAATTGCCTGCTTAGTGGAGGCCTACAACT  1019

seq1  GCACATGAAGGGAAGATGAACCTTGTTACGCTGTCTGTCACCGCCACAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAAGGGAAGATGAACCTTGTTACGCTGTCTGTCACCGCCACAAT  1069

seq1  TCGACTCTTCTTTCCTGTCCCATTATCTGTTCTAAAATCCCACAGCAGTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTCTTCTTTCCTGTCCCATTATCTGTTCTAAAATCCCACAGCAGTC  1119

seq1  TCCTGGGAGGGTTGCGCCGAGCTCAACTTGAAAATGTTGATGAACATTTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAGGGTTGCGCCGAGCTCAACTTGAAAATGTTGATGAACATTTG  1169

seq1  AGAGAAACGGAGCCCTGTGAGCTTGCTCACACATATGCTCTCCTTTGCAG  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACGGAGCCCTGTGAGCTTGCTCACACATATGCTCTCCTTTGCAG  1219

seq1  TATACCAATAGAGCCCACAAATGAATTC  1276
      ||||||||||||||||||||||||||||
seq2  TATACCAATAGAGCCCACAAATGAATTC  1247