BAC Information

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BAC

Clone NameB6Ng01-052L17
Chromosome10 (Build37)
Map Location 94,024,457 - 94,132,158
singlet/doubletdoublet
Overlap geneTmcc3
Upstream geneCcdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
Downstream geneEG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052L17.bB6Ng01-052L17.g
ACCDH875997DH875998
length7681,030
definitionDH875997|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L17, 5' end.DH875998|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,024,457 - 94,025,224)(94,131,120 - 94,132,158)
sequence
gaattctgtcagctaccatagacacaattaggcttgtgtcagtaagctct
cattgtgcactctgtgcactttcaagttaaatccagcctgagaaacactg
gctctctaagtgaccattcattctatgaggaagcaagacgtcagcccagg
gcaccaacgtggttgtttagggtttgctggttttccgaatttgaaaatta
agcatgtctgtgtctaaatctgatggcactcagttacctccttgatgtta
gcaccttgctgtagacctttccaatccccattcccttttgtttatacttt
atattctggtaacacacacacacacacacacacacacgtttatcagatag
catcgtggacattctggaaactaaaatgcagtgtgcatcaacaggctaat
taatttgctactgaaaggtgataattttttgacagttctttcatttttgt
gctctaagattgttttgcttcttaacatattttttgagatataattcaca
gaaatgtgcatatatacatacatacatacatacatacatacatacatata
tacatacatatataatacatattatacataaattatatatataatgtata
gttggatgcttctaaccctgcatggatgactaacatcagcaatgtcagtg
gtctggtgctccctcacgcccccttctggtaactcactctcccagcttct
gcatgggtaatcacagtctctaagtcatacagcatgaatggtgtgtgtgt
gtgtgtgtagggggaatg
gaattcttgagacactgagctgctgaaagcagtgttgaaaagaaagggtg
aatgtcactcatgccttatctggtagagagtgtttataagttcacctgta
ggaaaagcactgtgatttaaagtgaattaatgtttgtgttaactcttcat
tgctaaggtttggtttctaataaaaactttaagatacagaccacatagag
tcctcaacaattattagaagcatacaagaaatcaggtgcgatggcacaca
cctgtaatgccagcactttaaaaagtgatgcagtagggttccaagttcaa
gactagtcagaaataaacagtcacacacacacacacacacacacacaact
ggatgtaagcatagggtcataggtatgaatacaaggatactaccaagatg
ggaaggagcctagctcctgcacatcctctgtgaaaggcaacatttattac
aattgtgtttgcctttattgcacgtcatcctcagataaataaaatagagg
gctttcatttccagtcagttgtcatagcaactttttgactacccagagag
gaaggaattcttgtatcttaagccctgactccagagaactaaaaaggaag
caaagactaaaaggaacattaaagaagggtttgcaagatgtgataaaatt
agatctctgttgtgcagtacttttcctgtaaatgtatatacatttcccct
gattatttatataccgccttatagatctcaggactctacagcatagacta
ataataactaccacttatcgcttattttacggcagtcacgcagaacatca
tataacttatgtttttttctactgctcccaaacattgtaagaaccagcat
gattttttgaacacttttaagatgtggaaagtgaatgtggattggataaa
gctggttcactaatcaaccagtaagaagctcaagcttcaatacaactgga
catttcttagccttctacttgggaggcctccctctttactaagcaaaatt
tgcagctcattctttttaaccataaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_94024457_94025224
seq2: B6Ng01-052L17.b_44_811

seq1  GAATTCTGTCAGCTACCATAGACACAATTAGGCTTGTGTCAGTAAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAGCTACCATAGACACAATTAGGCTTGTGTCAGTAAGCTCT  50

seq1  CATTGTGCACTCTGTGCACTTTCAAGTTAAATCCAGCCTGAGAAACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCACTCTGTGCACTTTCAAGTTAAATCCAGCCTGAGAAACACTG  100

seq1  GCTCTCTAAGTGACCATTCATTCTATGAGGAAGCAAGACGTCAGCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTAAGTGACCATTCATTCTATGAGGAAGCAAGACGTCAGCCCAGG  150

seq1  GCACCAACGTGGTTGTTTAGGGTTTGCTGGTTTTCCGAATTTGAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAACGTGGTTGTTTAGGGTTTGCTGGTTTTCCGAATTTGAAAATTA  200

seq1  AGCATGTCTGTGTCTAAATCTGATGGCACTCAGTTACCTCCTTGATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCTGTGTCTAAATCTGATGGCACTCAGTTACCTCCTTGATGTTA  250

seq1  GCACCTTGCTGTAGACCTTTCCAATCCCCATTCCCTTTTGTTTATACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGCTGTAGACCTTTCCAATCCCCATTCCCTTTTGTTTATACTTT  300

seq1  ATATTCTGGTAACACACACACACACACACACACACACGTTTATCAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGGTAACACACACACACACACACACACACACGTTTATCAGATAG  350

seq1  CATCGTGGACATTCTGGAAACTAAAATGCAGTGTGCATCAACAGGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGGACATTCTGGAAACTAAAATGCAGTGTGCATCAACAGGCTAAT  400

seq1  TAATTTGCTACTGAAAGGTGATAATTTTTTGACAGTTCTTTCATTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTACTGAAAGGTGATAATTTTTTGACAGTTCTTTCATTTTTGT  450

seq1  GCTCTAAGATTGTTTTGCTTCTTAACATATTTTTTGAGATATAATTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGATTGTTTTGCTTCTTAACATATTTTTTGAGATATAATTCACA  500

seq1  GAAATGTGCATATATACATACATACATACATACATACATACATACATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGCATATATACATACATACATACATACATACATACATACATATA  550

seq1  TACATACATATATAATACATATTATACATAAATTATATATATAATGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATATATAATACATATTATACATAAATTATATATATAATGTATA  600

seq1  GTTGGATGCTTCTAACCCTGCATGGATGACTAACATCAGCAATGTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGCTTCTAACCCTGCATGGATGACTAACATCAGCAATGTCAGTG  650

seq1  GTCTGGTGCTCCCTCACGCCCCCTTCTGGTAACTCACTCTCCCAGCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTGCTCCCTCACGCCCCCTTCTGGTAACTCACTCTCCCAGCTTCT  700

seq1  GCATGGGTAATCACAGTCTCTAAGTCATACAGCATGAATGGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTAATCACAGTCTCTAAGTCATACAGCATGAATGGTGTGTGTGT  750

seq1  GTGTGTGTAGGGGGAATG  768
      ||||||||||||||||||
seq2  GTGTGTGTAGGGGGAATG  768

seq1: chr10_94131120_94132158
seq2: B6Ng01-052L17.g_68_1097 (reverse)

seq1  TTCATTTATTGTGTAAAAGAGATGAGCTGGCAAAATATTTGCTTAGTAAA  50
      ||||||||| ||  |||||| ||||||| |||||   |||||||||||||
seq2  TTCATTTATGGTTAAAAAGA-ATGAGCT-GCAAA--TTTTGCTTAGTAAA  46

seq1  GGAGGGAGGGGCTCCACAAAGGTAGAGGGTGCTTGAAGAAATGGTCAGTT  100
       |||||| || |||| |||  ||||| |  |||  ||||||||  |||||
seq2  -GAGGGA-GGCCTCC-CAA--GTAGAAG--GCT--AAGAAATGTCCAGTT  87

seq1  GTATTGAAGGCTGAGC-TCTTACTGTGTGACTTTAGTGAA-CAGCTTTAT  148
      |||||||||  ||||| ||||||||  |||  |||||||| |||||||||
seq2  GTATTGAAGCTTGAGCTTCTTACTGGTTGA--TTAGTGAACCAGCTTTAT  135

seq1  CC-ATTCACATTCACTTTCCACATCTTAAAAGGTGTAC-AAAAATCATGC  196
      || || ||||||||||||||||||||||||| |||| | |||||||||||
seq2  CCAATCCACATTCACTTTCCACATCTTAAAA-GTGTTCAAAAAATCATGC  184

seq1  T-GCTCTTACAATG-TTGGGAGCAGTAGAAGAAAACATAAGGTATATGAT  244
      | | |||||||||| ||||||||||||||| |||||||||| ||||||||
seq2  TGGTTCTTACAATGTTTGGGAGCAGTAGAAAAAAACATAAGTTATATGAT  234

seq1  GTTCTGCGTGACTGGCGTATAATAAGCGATAAGTGGTAGTTATTATTAGT  294
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  GTTCTGCGTGACTGCCGTAAAATAAGCGATAAGTGGTAGTTATTATTAGT  284

seq1  CTATGCTGTAGAGTCCTGAGATCTATAAGGCGGTATATAAATAATCAGGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGTAGAGTCCTGAGATCTATAAGGCGGTATATAAATAATCAGGG  334

seq1  GAAATGTATATACATTTACAGGAAAAGTACTGCACAACAGAGATCTAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATATACATTTACAGGAAAAGTACTGCACAACAGAGATCTAATT  384

seq1  TTATCACATCTTGCAAACCCTTCTTTAATGTTCCTTTTAGTCTTTGCTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACATCTTGCAAACCCTTCTTTAATGTTCCTTTTAGTCTTTGCTTC  434

seq1  CTTTTTAGTTCTCTGGAGTCAGGGCTTAAGATACAAGAATTCCTTCCTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGTTCTCTGGAGTCAGGGCTTAAGATACAAGAATTCCTTCCTCT  484

seq1  CTGGGTAGTC-AAAAGTTGCTATGACAACTGACTGGAAATGAAAGCCCTC  543
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGTCAAAAAGTTGCTATGACAACTGACTGGAAATGAAAGCCCTC  534

seq1  TATTTTATTTATCTGAGGATGACGTGCAATAAAGGCAAACACAATTGTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTATCTGAGGATGACGTGCAATAAAGGCAAACACAATTGTAA  584

seq1  TAAATGTTGCCTTTCACAGAGGATGTGCAGGAGCTAGGCTCCTTCCCATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTGCCTTTCACAGAGGATGTGCAGGAGCTAGGCTCCTTCCCATC  634

seq1  TTGGTAGTATCCTTGTATTCATACCTATGACCCTATGCTTACATCCAGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGTATCCTTGTATTCATACCTATGACCCTATGCTTACATCCAGTT  684

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGACTGTTTATTTCTGACTAGTCTTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGACTGTTTATTTCTGACTAGTCTTGA  734

seq1  ACTTGGAACCCTACTGCATCACTTTTTAAAGTGCTGGCATTACAGGTGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAACCCTACTGCATCACTTTTTAAAGTGCTGGCATTACAGGTGTG  784

seq1  TGCCATCGCACCTGATTTCTTGTATGCTTCTAATAATTGTTGAGGACTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCGCACCTGATTTCTTGTATGCTTCTAATAATTGTTGAGGACTCT  834

seq1  ATGTGGTCTGTATCTTAAAGTTTTTATTAGAAACCAAACCTTAGCAATGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCTGTATCTTAAAGTTTTTATTAGAAACCAAACCTTAGCAATGA  884

seq1  AGAGTTAACACAAACATTAATTCACTTTAAATCACAGTGCTTTTCCTACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAACACAAACATTAATTCACTTTAAATCACAGTGCTTTTCCTACA  934

seq1  GGTGAACTTATAAACACTCTCTACCAGATAAGGCATGAGTGACATTCACC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACTTATAAACACTCTCTACCAGATAAGGCATGAGTGACATTCACC  984

seq1  CTTTCTTTTCAACACTGCTTTCAGCAGCTCAGTGTCTCAAGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCAACACTGCTTTCAGCAGCTCAGTGTCTCAAGAATTC  1030