BAC Information

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BAC

Clone NameB6Ng01-054M16
Chromosome10 (Build37)
Map Location 40,218,400 - 40,219,481
singlet/doubletsinglet
Overlap genenone
Upstream geneFyn, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374
Downstream geneSlc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M16.g
ACCDH877441
length1,078
definitionDH877441|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttaggcaaagtctgaaagaggaaggttgtgaaactgggtcag
gaggaggcgtctgatgataaaacacactttctgttcagcgatgagggacg
gattccaaacatatatagcagaccgtacactgaccctgtggcaggtgaag
gagccttcagactctgtgagctttttgaccctgggaaaaaagcttcactg
gggtgagacatgcgggagcaggcacagctggctgacaggtcttctgcccg
ttgataggtccctgcctcgtcacgtggacaggaaaatgatagcgacttct
ttaggctggagagatggcttgaaagggtggagcatattccattctagcag
aagacttaagttcagttcccagggcccacttcaggctgctcacgcccctg
ttaacccagccccaggaggcctgatgccctcttctggtccttgcaggcac
ttgtgcctgcatacacacacacacacacacacacacacacacaacttaat
ttatttatttatttatttatttatttatttatttatttattttagtacat
ataaaagaaagagcccaccggtggctatggagatgctcagcagtgaagtc
cactgactgctctttcagacagcctaggttcagttcccagcgcccacatg
gtaccccacaaccatctgtaattccagttccatggaatctgatagcctct
tctgacctctgcaggtaccaaagcacacacatggtgcacacacatacatg
gggcaaaacatcccgtatgcaacaattttttagaaagaaagctcaaacta
atgttctttcgaagccatgactaattcctgtgttcaaatgagttgggggg
agggggcaactgaattggtgtctttgtttaaaaaggggttctactgtata
gctcaggctagcctcagactaatagtgtttctcactcaacagcttctgtg
gtgcaccacaacgagaggaaaataaaatttcagagttattgagcatctaa
ttgtggagactggtatgcctttgttatcatgttattacgactagtcacag
gagaatataaaaactataacaattttga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40218400_40219481
seq2: B6Ng01-054M16.g_71_1148 (reverse)

seq1  TCAAAATTTGTTATAGTTTTTTATA-TCTCCTTGGTGACTAGTCTGTAAT  49
      |||||| ||||||||| |||||||| ||||||  |||||||||| |||||
seq2  TCAAAA-TTGTTATAG-TTTTTATATTCTCCT--GTGACTAGTC-GTAAT  45

seq1  AACATGATAACAGA-GCATACCAGTCTCCACAATTAGATGCTCAATAAAC  98
      |||||||||||| | ||||||||||||||||||||||||||||||| |||
seq2  AACATGATAACAAAGGCATACCAGTCTCCACAATTAGATGCTCAAT-AAC  94

seq1  TCCTGAAATTTTAATTTTCCTCTCGTTGTGGTGGCACACAGGAAGCTGTT  148
      | |||||||||| ||||||||||||||||||||   |||| |||||||||
seq2  T-CTGAAATTTT-ATTTTCCTCTCGTTGTGGTGCACCACA-GAAGCTGTT  141

seq1  GAGTGAGAAACACTATTAGTCTGAGGCTAGCCTGAGCTATACAGTAGAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGAAACACTATTAGTCTGAGGCTAGCCTGAGCTATACAGTAGAAC  191

seq1  CCCTTTTTAAACAAAGACACCATTTCAGTTGCCCCCT-CCCCCAACTCAT  247
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  CCCTTTTTAAACAAAGACACCAATTCAGTTGCCCCCTCCCCCCAACTCAT  241

seq1  TTGAACACAGGAATTAGTCATGGCTTCG-AAGAACATTAGTTTTGAGCTT  296
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TTGAACACAGGAATTAGTCATGGCTTCGAAAGAACATTAG-TTTGAGCTT  290

seq1  TCTTTCTAAAAAATTGTTGCATAC-GGATGTTTTGCCCCATGTATGTGTG  345
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTTTCTAAAAAATTGTTGCATACGGGATGTTTTGCCCCATGTATGTGTG  340

seq1  TGCACCATGTGTGTGC-TTGGTACCTGCAGAGGTCAGAAGAGGCTATCAG  394
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCACCATGTGTGTGCTTTGGTACCTGCAGAGGTCAGAAGAGGCTATCAG  390

seq1  ATTCCATGGAACTGGAATTACAGATGGTTGTGGGGTACCATGTGGGCGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGAACTGGAATTACAGATGGTTGTGGGGTACCATGTGGGCGCT  440

seq1  GGGAACTGAACCTAGGCTGTCTGAAAGAGCAGTCAGTGGACTTCACTGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGAACCTAGGCTGTCTGAAAGAGCAGTCAGTGGACTTCACTGCT  490

seq1  GAGCATCTCCATAGCCACCGGTGGGCTCTTTCTTTTATATGTACTAAAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTCCATAGCCACCGGTGGGCTCTTTCTTTTATATGTACTAAAAT  540

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATTAAGTTGTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATTAAGTTGTGT  590

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTATGCAGGCACAAGTGCCTGCAAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTATGCAGGCACAAGTGCCTGCAAGG  640

seq1  ACCAGAAGAGGGCATCAGGCCTCCTGGGGCTGGGTTAACAGGGGCGTGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGAGGGCATCAGGCCTCCTGGGGCTGGGTTAACAGGGGCGTGAG  690

seq1  CAGCCTGAAGTGGGCCCTGGGAACTGAACTTAAGTCTTCTGCTAGAATGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAGTGGGCCCTGGGAACTGAACTTAAGTCTTCTGCTAGAATGG  740

seq1  AATATGCTCCACCCTTTCAAGCCATCTCTCCAGCCTAAAGAAGTCGCTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTCCACCCTTTCAAGCCATCTCTCCAGCCTAAAGAAGTCGCTAT  790

seq1  CATTTTCCTGTCCACGTGACGAGGCAGGGACCTATCAACGGGCAGAAGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTGTCCACGTGACGAGGCAGGGACCTATCAACGGGCAGAAGAC  840

seq1  CTGTCAGCCAGCTGTGCCTGCTCCCGCATGTCTCACCCCAGTGAAGCTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCCAGCTGTGCCTGCTCCCGCATGTCTCACCCCAGTGAAGCTTT  890

seq1  TTTCCCAGGGTCAAAAAGCTCACAGAGTCTGAAGGCTCCTTCACCTGCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGGGTCAAAAAGCTCACAGAGTCTGAAGGCTCCTTCACCTGCCA  940

seq1  CAGGGTCAGTGTACGGTCTGCTATATATGTTTGGAATCCGTCCCTCATCG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAGTGTACGGTCTGCTATATATGTTTGGAATCCGTCCCTCATCG  990

seq1  CTGAACAGAAAGTGTGTTTTATCATCAGACGCCTCCTCCTGACCCAGTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGAAAGTGTGTTTTATCATCAGACGCCTCCTCCTGACCCAGTTT  1040

seq1  CACAACCTTCCTCTTTCAGACTTTGCCTAAGTGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTTCCTCTTTCAGACTTTGCCTAAGTGAATTC  1078