BAC Information

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BAC

Clone NameB6Ng01-055B01
Chromosome10 (Build37)
Map Location 56,122,605 - 56,267,815
singlet/doubletdoublet
Overlap geneEG668347
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055B01.bB6Ng01-055B01.g
ACCDH877632DH877633
length862820
definitionDH877632|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B01, 5' end.DH877633|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,266,955 - 56,267,815)(56,122,605 - 56,123,420)
sequence
gaattccacgtggcagcttataccgcaatgctagattcatgctgttttca
gaaaatacacaactcatgatgtatgaaccaaattatctctatgcaaaatc
ctggccattgatgcaaacatcttttttttttttttttttttttttttttt
tggtttttcgagacagggtttctctgtatagccctggctgtcctggacct
cactttgtagaccaggctggcctccaactcaaaaatccacctgcctctgc
ctcccgagtgctgggattaaaggggtgcgccaccccccccggctgcaaac
atcttttaaagcactctgtgggtaagctctatgcagaccaagacaaaaca
tgcttaacttgcaacctctgctttataacgaggggccaaagcattaaaaa
actgtaaagactagcttccttagcacttaacgggaagtcacagactgtaa
acccccagcccccaagtctccaagaaattgcaggggctgctgttctgtta
tttggttcacacaccttcgttccatctcctcgggtccagcttctcttcct
agactgtgcctccggcttcaaccccattttccctgatgaatgcagttagg
ccttcagaaccacagtgccttctctatccccacctttagcaaaaaatcca
gtgcctctcatgtctcgaggcattctgcttgtctggatggcctgtatgcg
taagaggctgattgggaattgaagtgatcagtataggctcaagactcatg
aaagacttaagtactcagcacagagcagatttatttgtgccagaacgggt
agggaattaaatgacaaaggcaggagaatgaggatgatggagaaggggaa
gggaactaggga
gaattctctttgtagaccatattgaaaacaaactcactgccattcagtta
tcaccatacaggaacatttttctttttctttttctttttctttttctttt
tcttttctttcttctttttttttttttagttggggtctctcagactaatt
ttaaagtcactatgtatccaagacgacttgaaattcttatttgtaatttt
gcagaagaactgtctacctcctaccagctgagattacatatctgagtcac
tttgcctcgttttatgtggggctggagatgtagttcagggctgcataaag
gctagggaagtagtcaacaaatgtagttattctcaggccctccatacgtt
tctctgagaaagatacctatttaaagtataattttatgccattattccac
ctaagaaaattaactataatttgttttaaaaaatcatctaatcttccata
tttagactctcctgatacttcagattctttttagatttgttttaatttca
tctgtgtacatgtatgtgcatctgtacaggtaagcacagatatcctacgt
cctaggagaccagaggggttggagtttcaggtgggttcagtactcatggt
gtgggtactgggaactgaacccaggtcctctagaaagaatagtatttgtt
cttaaccactgggctaccttctctatttcccagagcatctgcatgcgatt
tcccaagaccagtgtagtggcacagtccttgaatctcagccctcgaaaag
caggaacaagtagattttttgtaagtaaatccagcctgggtctgcatgat
gattttcagggctgttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56266955_56267815
seq2: B6Ng01-055B01.b_44_905 (reverse)

seq1  TCCCTTGTTCCCTTCCCCTTCTCCATCATCCTCTATCTCCTGCCTTTGTC  50
      ||||| |||||||||||||||||||||||||||  |||||||||||||||
seq2  TCCCTAGTTCCCTTCCCCTTCTCCATCATCCTCATTCTCCTGCCTTTGTC  50

seq1  ATTT-ATTCCCTACCCGCTCTGGCACAAATAAATCTGCTCTGTGCTGAGT  99
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTTAATTCCCTACCCGTTCTGGCACAAATAAATCTGCTCTGTGCTGAGT  100

seq1  ACTTAAGTCTTTCATGAGTCTTGAGCCTATACTGATCACTTCAATTCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTCTTTCATGAGTCTTGAGCCTATACTGATCACTTCAATTCCCA  150

seq1  ATCAGCCTCTTACGCATACAGGCCATCCAGACAAGCAGAATGCCTCGAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTCTTACGCATACAGGCCATCCAGACAAGCAGAATGCCTCGAGA  200

seq1  CATGAGAGGCACTGGATTTTTTGCTAAAGGTGGGGATAGAGAAGGCACTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGGCACTGGATTTTTTGCTAAAGGTGGGGATAGAGAAGGCACTG  250

seq1  TGGTTCTGAAGGCCTAACTGCATTCATCAGGGAAAATGGGGTTGAAGCCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGAAGGCCTAACTGCATTCATCAGGGAAAATGGGGTTGAAGCCG  300

seq1  GAGGCACAGTCTAGGAAGAGAAGCTGGACCCGAGGAGATGGAACGAAGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAGTCTAGGAAGAGAAGCTGGACCCGAGGAGATGGAACGAAGGT  350

seq1  GTGTGAACCAAATAACAGAACAGCAGCCCCTGCAATTTCTTGGAGACTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAACCAAATAACAGAACAGCAGCCCCTGCAATTTCTTGGAGACTTG  400

seq1  GGGGCTGGGGGTTTACAGTCTGTGACTTCCCGTTAAGTGCTAAGGAAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGGGGTTTACAGTCTGTGACTTCCCGTTAAGTGCTAAGGAAGCT  450

seq1  AGTCTTTACAGTTTTTTAATGCTTTGGCCCCTCGTTATAAAGCAGAGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTACAGTTTTTTAATGCTTTGGCCCCTCGTTATAAAGCAGAGGTT  500

seq1  GCAAGTTAAGCATGTTTTGTCTTGGTCTGCATAGAGCTTACCCACAGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTAAGCATGTTTTGTCTTGGTCTGCATAGAGCTTACCCACAGAGT  550

seq1  GCTTTAAAAGATGTTTGCAGCCGGGCGTGGTGGCGCACGCCTTTAATCCC  599
      ||||||||||||||||||||||||| | |||||||||| |||||||||||
seq2  GCTTTAAAAGATGTTTGCAGCCGGGGGGGGTGGCGCACCCCTTTAATCCC  600

seq1  AGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTG  649
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  AGCACTCGGGAGGCAGAGGCAGGTGGATTTTTGAGTTGGAGGCCAGCCTG  650

seq1  GTCTACAAAGTGAGGTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGGTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGT  700

seq1  CTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGTTTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGTTTGC  750

seq1  ATCAATGGCCAGGATTTTGCATAGAGATAATTTGGTTCATACATCATGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGCCAGGATTTTGCATAGAGATAATTTGGTTCATACATCATGAG  800

seq1  TTGTGTATTTTCTGAAAACAGCATGAATCTAGCATTGCGGTATAAGCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTTTCTGAAAACAGCATGAATCTAGCATTGCGGTATAAGCTGC  850

seq1  CACGTGGAATTC  861
      ||||||||||||
seq2  CACGTGGAATTC  862

seq1: chr10_56122605_56123420
seq2: B6Ng01-055B01.g_69_888

seq1  GAATTCTCTTTGTAGACCATATTGAAAACAAACTCACTGCCATTCAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGTAGACCATATTGAAAACAAACTCACTGCCATTCAGTTA  50

seq1  TCACCATACAGGAACATTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATACAGGAACATTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTT  100

seq1  TCTTTTCTTTCTTCTTTTTTTTTTTTTAGTTGGGGTCTCTCAGACTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTCTTCTTTTTTTTTTTTTAGTTGGGGTCTCTCAGACTAATT  150

seq1  TTAAAGTCACTATGTATCCAAGACGACTTGAAATTCTTATTTGTAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCACTATGTATCCAAGACGACTTGAAATTCTTATTTGTAATTTT  200

seq1  GCAGAAGAACTGTCTACCTCCTACCAGCTGAGATTACATATCTGAGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAACTGTCTACCTCCTACCAGCTGAGATTACATATCTGAGTCAC  250

seq1  TTTGCCTCGTTTTATGTGGGGCTGGAGATGTAGTTCAGGGCTGCATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCGTTTTATGTGGGGCTGGAGATGTAGTTCAGGGCTGCATAAAG  300

seq1  GCTAGGGAAGTAGTCAACAAATGTAGTTATTCTCAGGCCCTCCATACGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGAAGTAGTCAACAAATGTAGTTATTCTCAGGCCCTCCATACGTT  350

seq1  TCTCTGAGAAAGATACCTATTTAAAGTATAATTTTATGCCATTATTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGAAAGATACCTATTTAAAGTATAATTTTATGCCATTATTCCAC  400

seq1  CTAAGAAAATTAACTATAATTTGTTTTAAAAAATCATCTAATCTTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAATTAACTATAATTTGTTTTAAAAAATCATCTAATCTTCCATA  450

seq1  TTTAGACTCTCCTGATACTTCAGATTCTTTTTAGATTTGTTTTAATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTCTCCTGATACTTCAGATTCTTTTTAGATTTGTTTTAATTTCA  500

seq1  TCTGTGTACATGTATGTGCATCTGTACAGGTAAGCACAGATATCCTACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTACATGTATGTGCATCTGTACAGGTAAGCACAGATATCCTACGT  550

seq1  CCTAGGAGACCAGAGGGGTTGGAGTTTCAGGTGGGTTCAGTACTCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGACCAGAGGGGTTGGAGTTTCAGGTGGGTTCAGTACTCATGGT  600

seq1  GTGGGTACTGGGAACTGAACCCAGGTCCTCTAGAAAGAATAGTATTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACTGGGAACTGAACCCAGGTCCTCTAGAAAGAATAGTATTTGTT  650

seq1  CTTAACCACTGGGCTACC-TCTCTATTTCCCAGAGCATCTGCATGCGATT  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTAACCACTGGGCTACCTTCTCTATTTCCCAGAGCATCTGCATGCGATT  700

seq1  TCCCAAGACCAGTGTAGTGGCACAGTCCTTGAATCTCAGCACTCG-AAAG  748
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  TCCCAAGACCAGTGTAGTGGCACAGTCCTTGAATCTCAGCCCTCGAAAAG  750

seq1  CAGGAACAAGTAGA-TTTTTGTAAGTAAATCCAGCCT-GGTCTGCATGAT  796
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  CAGGAACAAGTAGATTTTTTGTAAGTAAATCCAGCCTGGGTCTGCATGAT  800

seq1  GAGTTTCAGGGCTGTTGGGG  816
      || |||||||||||||||||
seq2  GATTTTCAGGGCTGTTGGGG  820