BAC Information

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BAC

Clone NameB6Ng01-055F21
Chromosome10 (Build37)X (Build37)
Map Location 104,054,235 - 104,054,36378,575,477 - 78,576,562
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055F21.bB6Ng01-055F21.g
ACCDH877836DH877837
length9681,074
definitionDH877836|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F21, 5' end.DH877837|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,235 - 104,054,363)(78,575,477 - 78,576,562)
sequence
gaattctcagctgaggactactgaatggctgagaagcacctaaagaaatg
ttcaacatccttaatcatcagagaaatgcacatcaaaacaacactgagat
tccacctcatatcagtcagaatggctaaggttctcaggtcaattgagtgt
attgattgtttttgttcagatggctatttttagtacattaattctatgga
tctatgacttggtgagatttttccatcctatgctatcttcttagatgtct
tactttaaagacttgccatacttgtcatataggtctttcactttattggt
tagagttataccaagatattttatattatttatggctatagtaaagggta
gtgttttcctgattactttttgggtccatttattgtttgtgtaaagaagg
gctacgtttttttttttttttttctgagttaattttgcatccagtcattt
tgctgagattttttttttttgtcagctaggaaatttccagtgaagttttg
gggttgtttatgtataatattacatcacctgtgaatatcaatactttgac
tttttttctataatttgtagccacttgatttcctttagttgtcttattgc
tctagctagaacttgaagtactatcttgaatagatatagagagttgaaag
tcatgtcttgtccctgattttagtggaattgcttgaaatttctttccatt
taatttattattgacattaacttgctgtatattgctttattgtacttaag
tataatccttgtattcctaatctctctaaggcttttaacatgaaggtata
ttagattttgccaaagctttttcagcatttaatgagatgttcacattttt
ttctttcagtttgtttatatggcagattatattgttggattttcataaat
taaaccattctagcatccctgggatgaagctttcttgatcatggtatact
ttaggtatcaggtgactg
gaattccagagtggttgtaacagcttgcaatcccaccagcaatggattat
ttttcacctcatttttgccttctttaatttgatcgttccttctgttttga
tttatttgtttaacactgagtggtctatgcagctttcatttctcatgtaa
ttttccttccttggtttcttttctaatttatattgtatcctttcatttaa
ttgtcattgtatgattagtgattcaaataatgcccaaagagtaggaatgt
tgtagttatattttcatcatatttttgacatgtatcataattttgtgctg
atatctgactttgttagcttcacatattgcatttattatatttcctattg
ttatcatctcatgtagaaatcaatatgtcttcttctcctcacttcatttt
tttttctatttctatgtgttctacaaaataaatgcatccttcagaaattc
cttagaaatcccttgttatagatgaatccgtagtaaaattatcattttta
tttttaattttaaggactggatttatttggtggaaaagtaaaatttctca
accgaagaatgtgattttatatcctaaacttctcccagatgatgtctaca
gataaaaaatattagagaaaggctggaagaacttgtgcaagccggcaaac
caaaaggaagaccaggagtctcaactaacctgggtcttcgcgatctctca
gacactgagacatgaaaaaggcaccatatactagctggtatgagacctcc
aatacaccagaagactgcctggcctggcctcagtgagaaaagaggtatgt
aaagctggagagatttgaggctccagggagtggggaagcctggcaggtgg
tggtgggaaatcctcgtggagactgggaggagtaatgagatgagaagttt
tggagagcagacctggaagggagaatgatatactgcaaaaaaaaggatta
aataaaatttaaaaataataattttcatggaagatactcttataagaaaa
tatatgtatcaaaagtggtacataagacagtccttttttatcgtcataaa
gagaaagtaggagagataaactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054235_104054363
seq2: B6Ng01-055F21.b_48_176 (reverse)

seq1  CTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTT  50
      ||||||||||||||||| | |||||||||||||||| ||||||||||| |
seq2  CTTAGCCATTCTGACTGATATGAGGTGGAATCTCAGTGTTGTTTTGATGT  50

seq1  GCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCT  100
      ||||||| |||||||||||||||||||||||||| || ||||||||||| 
seq2  GCATTTCTCTGATGATTAAGGATGTTGAACATTTCTTTAGGTGCTTCTCA  100

seq1  GCCATTCGGTATTCCTCAGGTGAGAATTC  129
      ||||||| ||| ||||||| |||||||||
seq2  GCCATTCAGTAGTCCTCAGCTGAGAATTC  129

seq1: chrX_78575477_78576562
seq2: B6Ng01-055F21.g_66_1139

seq1  GAATTCCAGAGTGGTTGTAACAGCTTGCAATCCCACCAGCAATGGATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTGGTTGTAACAGCTTGCAATCCCACCAGCAATGGATTAT  50

seq1  TTTTCACCTCATTTTTGCCTTCTTTAATTTGATCGTTCCTTCTGTTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCTCATTTTTGCCTTCTTTAATTTGATCGTTCCTTCTGTTTTGA  100

seq1  TTTATTTGTTTAACACTGAGTGGTCTATGCAGCTTTCATTTCTCATGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTTAACACTGAGTGGTCTATGCAGCTTTCATTTCTCATGTAA  150

seq1  TTTTCCTTCCTTGGTTTCTTTTCTAATTTATATTGTATCCTTTCATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCCTTGGTTTCTTTTCTAATTTATATTGTATCCTTTCATTTAA  200

seq1  TTGTCATTGTATGATTAGTGATTCAAATAATGCCCAAAGAGTAGGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGTATGATTAGTGATTCAAATAATGCCCAAAGAGTAGGAATGT  250

seq1  TGTAGTTATATTTTCATCATATTTTTGACATGTATCATAATTTTGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTATATTTTCATCATATTTTTGACATGTATCATAATTTTGTGCTG  300

seq1  ATATCTGACTTTGTTAGCTTCACATATTGCATTTATTATATTTCCTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGACTTTGTTAGCTTCACATATTGCATTTATTATATTTCCTATTG  350

seq1  TTATCATCTCATGTAGAAATCAATATGTCTTCTTCTCCTCACTTCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCTCATGTAGAAATCAATATGTCTTCTTCTCCTCACTTCATTTT  400

seq1  TTTTTCTATTTCTATGTGTTCTACAAAATAAATGCATCCTTCAGAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATTTCTATGTGTTCTACAAAATAAATGCATCCTTCAGAAATTC  450

seq1  CTTAGAAATCCCTTGTTATAGATGAATCCGTAGTAAAATTATCATTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATCCCTTGTTATAGATGAATCCGTAGTAAAATTATCATTTTTA  500

seq1  TTTTTAATTTTAAGGACTGGATTTATTTGGTGGAAAAGTAAAATTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTAAGGACTGGATTTATTTGGTGGAAAAGTAAAATTTCTCA  550

seq1  ACCGAAGAATGTGATTTTATATCCTAAACTTCTCCCAGATGATGTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAGAATGTGATTTTATATCCTAAACTTCTCCCAGATGATGTCTACA  600

seq1  GATAAAAAATATTAGAGAAAGGCTGGAAGAACTTGTGCAAGCCGGCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAATATTAGAGAAAGGCTGGAAGAACTTGTGCAAGCCGGCAAAC  650

seq1  CAAAAGGAAGACCAGGAGTCTCAACTAACCTGGGTCTTCGCGATCTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAGACCAGGAGTCTCAACTAACCTGGGTCTTCGCGATCTCTCA  700

seq1  GACACTGAGACATGAAAAAGGCACCATATACTAGCTGGTATGAGACCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGACATGAAAAAGGCACCATATACTAGCTGGTATGAGACCTCC  750

seq1  AATACACCAGAAGACTGCCTGGCCTGGCCTCAGTGAGAAAAGAGGTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCAGAAGACTGCCTGGCCTGGCCTCAGTGAGAAAAGAGGTATGT  800

seq1  AAAGCTGGAGAGATTTGAGGCTCCAGGGAGTGGGGAAGCCTGGCAGGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGCTGGAGAGATTTGAGGCTCCAGGGAGTGGGGAAGCCTGGCA-GGTG  849

seq1  GTGGTGGGAAAATCCTCGTGGAGACTGGGAGGAGTAATGAGATGAGGAAG  900
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GTGGTGGG-AAATCCTCGTGGAGACTGGGAGGAGTAATGAGATGA-GAAG  897

seq1  TTTTGGAGAGCAGACCTGGAGGGAGAAAATGATTATACTGCAAAAAAAAA  950
      |||||||||||||||||||| || || ||||| |||||||| ||||||||
seq2  TTTTGGAGAGCAGACCTGGAAGG-GAGAATGA-TATACTGC-AAAAAAAA  944

seq1  GGATTAAATATAATTTAAAAATAATAATTTTCATTGAAGATACTCTTATA  1000
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GGATTAAATAAAATTTAAAAATAATAATTTTCATGGAAGATACTCTTATA  994

seq1  AGAAATTATATGTATTCAAAAGTGGTACATAAGACAGTCCCTGTTTTTAT  1050
      ||||| |||||||| |||||||||||||||||||||||||   |||||||
seq2  AGAAAATATATGTA-TCAAAAGTGGTACATAAGACAGTCC--TTTTTTAT  1041

seq1  CGTTAATAAAGGAGCAAAGTAGGAGAGTAGAACTAA  1086
      || | ||||| ||| ||||||||||||   ||||||
seq2  CG-TCATAAA-GAG-AAAGTAGGAGAGATAAACTAA  1074