BAC Information

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BAC

Clone NameB6Ng01-055N05
Chromosome10 (Build37)
Map Location 28,912,060 - 29,048,577
singlet/doubletdoublet
Overlap gene6330407J23Rik, Echdc1
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447
Downstream geneRnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055N05.bB6Ng01-055N05.g
ACCDH878167DH878168
length1,0081,068
definitionDH878167|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N05, 5' end.DH878168|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,912,060 - 28,913,070)(29,047,495 - 29,048,577)
sequence
gaattccttggatggaagctgctagtttaaaacatattgcatttctatac
aattataaaatgacttagttgtgaagtcaaggttgaggactattgatcca
gatgttgtattgtattataattatattctattataattcttgctatgaat
tgatctgtcctatttagggcatcttgtaaacagaaatatcctatttgacc
ttggttaaaaattttgacctgtggtcaacactgggcatgttcagcataga
ctttcaaatgacattattttgttttctaggttaaatataaattgtcagca
tagtttttatttgaatgtatagtcatggcaatgacatttgacctaaccta
atatgatctgtataagttttatatgtcattttgtgaatctactttatgtt
ctttgatttattccatgtacctcccccagaagcaggctgactctttttac
tgcgcagtaatattaaatggaatatttaatattttgaatatgatcactat
cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagt
tggggaggaaagggtttatttggcttacacttccatactgctgtccatca
ccaaggaagtcaggactggaactcaggcaggtcaggaagcagaagctgat
gcagaggccatggagggatattctttactggcttgcctcccctggcttgc
tcagcctgttctcttatagaaccaagaataccagcccagagatggtccca
cccacaaggagccttttccccttgatcactaattgagaaaatgccttaca
gttggatctcatggaggcatttcctcaactgaagctcctttctctgtgat
aactccagctgtgtcagttgacacacaaaccagccagtacaatcacctat
gttgaaatcattgctataatgttcttacacgactttgataagtactcatt
ctttcagaggctttctcttccatatacatcaaagcttagttgaagatgag
tccttaaa
gaattctttgtttagctctaactcttgagttctttgtatatattggatat
tagccatctacagatgtaggattggtaaagatctttttccaatctgttgg
tagctgttttgtccttactcaaaaagaaattagggaaacaacatcctccc
aatagtcacaagtaatataaaataccttggagtgactctcaccaagcaag
tgaaagatctgtataacaagaacttcaagtctctgaagaaagaaatcgaa
gatgatctcagaagatggaaagatctcccatgctcatggattggcaggat
taatatagtcaaaatggctatcttgccaaagtaatctagagtttcaatgg
ttctctctttctaagaatatgttctactcctgcctattagcctgctgggt
gactgcttctttgcagtcttctcccttgagtcctcctattcagccaatcc
atcccctaaatgcctggactctcccaaacccaaggcatcgctctttttct
cttgttttcattcgctttcttttctttgaaagcttcagccactcctactg
ctggttttatgtgaagcagtggactcttgtagctatttccactttctgcc
agtagttccttaggcttagcattgttaaacttaccaggagtaaaagcaca
ctctgggttctagttctgccacttagcaaaactatgcccttgagcaaatc
atgactatgagctcatttcctcattgacaggaatgacgatagatgcagaa
attgtagctttcagtacaatgggaaagacaaagacctatacattctgtaa
gttccacacacaggctgcttagctactagaagagttaaccatgggcagta
gttcagaatggtgatgctattaccaattcctctagctcacaaaatcctca
ttatcagaacctagctgtgcctctcagttctcttttgaattattgcatat
ttactttctttctcatttctgttccaaataaactagtctgactgtcatca
gttatgggtttataagttaaaaaaaaacaaaacactttacattcttagaa
tggggacaaaactccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28912060_28913070
seq2: B6Ng01-055N05.b_47_1054

seq1  GAATTCCTTGGATGGAAGCTGCTAGTTTAAAACATATTGCATTTCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGATGGAAGCTGCTAGTTTAAAACATATTGCATTTCTATAC  50

seq1  AATTATAAAATGACTTAGTTGTGAAGTCAAGGTTGAGGACTATTGATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAATGACTTAGTTGTGAAGTCAAGGTTGAGGACTATTGATCCA  100

seq1  GATGTTGTATTGTATTATAATTATATTCTATTATAATTCTTGCTATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTATTGTATTATAATTATATTCTATTATAATTCTTGCTATGAAT  150

seq1  TGATCTGTCCTATTTAGGGCATCTTGTAAACAGAAATATCCTATTTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTCCTATTTAGGGCATCTTGTAAACAGAAATATCCTATTTGACC  200

seq1  TTGGTTAAAAATTTTGACCTGTGGTCAACACTGGGCATGTTCAGCATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAAAAATTTTGACCTGTGGTCAACACTGGGCATGTTCAGCATAGA  250

seq1  CTTTCAAATGACATTATTTTGTTTTCTAGGTTAAATATAAATTGTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATGACATTATTTTGTTTTCTAGGTTAAATATAAATTGTCAGCA  300

seq1  TAGTTTTTATTTGAATGTATAGTCATGGCAATGACATTTGACCTAACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTATTTGAATGTATAGTCATGGCAATGACATTTGACCTAACCTA  350

seq1  ATATGATCTGTATAAGTTTTATATGTCATTTTGTGAATCTACTTTATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATCTGTATAAGTTTTATATGTCATTTTGTGAATCTACTTTATGTT  400

seq1  CTTTGATTTATTCCATGTACCTCCCCCAGAAGCAGGCTGACTCTTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTATTCCATGTACCTCCCCCAGAAGCAGGCTGACTCTTTTTAC  450

seq1  TGCGCAGTAATATTAAATGGAATATTTAATATTTTGAATATGATCACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGTAATATTAAATGGAATATTTAATATTTTGAATATGATCACTAT  500

seq1  CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT  550

seq1  TGGGGAGGAAAGGGTTTATTTGGCTTACACTTCCATACTGCTGTCCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGAAAGGGTTTATTTGGCTTACACTTCCATACTGCTGTCCATCA  600

seq1  CCAAGGAAGTCAGGACTGGAACTCAGGCAGGTCAGGAAGCAGAAGCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAGTCAGGACTGGAACTCAGGCAGGTCAGGAAGCAGAAGCTGAT  650

seq1  GCAGAGGCCATGGAGGGATATTCTTTACTGGCTTGCCTCCCCTGGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCATGGAGGGATATTCTTTACTGGCTTGCCTCCCCTGGCTTGC  700

seq1  TCAGCCTGTTCTCTTATAGAACCAAGAATACCAGCCCAGAGATGGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGTTCTCTTATAGAACCAAGAATACCAGCCCAGAGATGGTCCCA  750

seq1  CCCACAAGGAGCCTTTTCCCCTTGATCACTAATTGAGAAAATGCCTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGGAGCCTTTTCCCCTTGATCACTAATTGAGAAAATGCCTTACA  800

seq1  GTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGAT  850

seq1  AACTCCAGCTGTGTCAAGTTGACACACAAAACCAGCCAGTACAATCACCT  900
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  AACTCCAGCTGTGTC-AGTTGACACAC-AAACCAGCCAGTACAATCACCT  898

seq1  ATGTTGAAATCATTGCTAT-ATGTTCTCTACACGACTTTTGATAAGGTAC  949
      ||||||||||||||||||| ||||||| |||||||| |||||||| ||||
seq2  ATGTTGAAATCATTGCTATAATGTTCT-TACACGAC-TTTGATAA-GTAC  945

seq1  TCATTCTTTCAGAGAC-TCCTCTTCCATATACATCAAAGCTTAGTTGAGA  998
      |||||||||||||| | | |||||||||||||||||||||||||||||  
seq2  TCATTCTTTCAGAGGCTTTCTCTTCCATATACATCAAAGCTTAGTTGAAG  995

seq1  ATGAGTCCTTAAA  1011
      |||||||||||||
seq2  ATGAGTCCTTAAA  1008

seq1: chr10_29047495_29048577
seq2: B6Ng01-055N05.g_67_1134 (reverse)

seq1  CATGGGTGTTTTGTCCCCATTTCTAAGAAATGGTAAAGTGTTTTGTTTTT  50
      ||| || |||||||||||| |||||||||   ||||||||||||| ||||
seq2  CAT-GGAGTTTTGTCCCCA-TTCTAAGAA--TGTAAAGTGTTTTG-TTTT  45

seq1  TTTTTAACTTATAAACCCATAAACTGATGAACAGGTCCAGACTAGTTTAT  100
      |||||||||||||||||||| |||||||| ||||   |||||||||||||
seq2  TTTTTAACTTATAAACCCAT-AACTGATG-ACAG--TCAGACTAGTTTAT  91

seq1  TTGGAACAGAAATGAAGAAAGAAAGTAAATATTGGCAATAATTCAAAAGA  150
      |||||||||||||| |||||||||||||||||  ||||||||||||||||
seq2  TTGGAACAGAAATG-AGAAAGAAAGTAAATAT--GCAATAATTCAAAAGA  138

seq1  GGAACTGAGGAGGCACAGCTAGGTTCTGATAATGAGGATTTTGTGAGCTA  200
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -GAACTGA-GAGGCACAGCTAGGTTCTGATAATGAGGATTTTGTGAGCTA  186

seq1  GAGGAATTGGTAATAGCATCACCATTCTGAACCTACTGCCCATGGTTAAC  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGGAATTGGTAATAGCATCACCATTCTGAA-CTACTGCCCATGGTTAAC  235

seq1  TCTTCTAGTAGCTAAGCAGCCTGTGTGTGGAACTTACAGAATGTATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGTAGCTAAGCAGCCTGTGTGTGGAACTTACAGAATGTATAGGT  285

seq1  CTTTGTCTTTCCCATTGTACTGAAAGCTACAATTTCTGCATCTATCGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTTCCCATTGTACTGAAAGCTACAATTTCTGCATCTATCGTCA  335

seq1  TTCCTGTCAATGAGGAAATGAGCTCATAGTCATGATTTGCTCAAGGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCAATGAGGAAATGAGCTCATAGTCATGATTTGCTCAAGGGCAT  385

seq1  AGTTTTGCTAAGTGGCAGAACTAGAACCCAGAGTGTGCTTTTACTCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTAAGTGGCAGAACTAGAACCCAGAGTGTGCTTTTACTCCTGG  435

seq1  TAAGTTTAACAATGCTAAGCCTAAGGAACTACTGGCAGAAAGTGGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAACAATGCTAAGCCTAAGGAACTACTGGCAGAAAGTGGAAATA  485

seq1  GCTACAAGAGTCCACTGCTTCACATAAAACCAGCAGTAGGAGTGGCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGAGTCCACTGCTTCACATAAAACCAGCAGTAGGAGTGGCTGAA  535

seq1  GCTTTCAAAGAAAAGAAAGCGAATGAAAACAAGAGAAAAAGAGCGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAGAAAAGAAAGCGAATGAAAACAAGAGAAAAAGAGCGATGCC  585

seq1  TTGGGTTTGGGAGAGTCCAGGCATTTAGGGGATGGATTGGCTGAATAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTGGGAGAGTCCAGGCATTTAGGGGATGGATTGGCTGAATAGGA  635

seq1  GGACTCAAGGGAGAAGACTGCAAAGAAGCAGTCACCCAGCAGGCTAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAGGGAGAAGACTGCAAAGAAGCAGTCACCCAGCAGGCTAATAG  685

seq1  GCAGGAGTAGAACATATTCTTAGAAAGAGAGAACCATTGAAACTCTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTAGAACATATTCTTAGAAAGAGAGAACCATTGAAACTCTAGAT  735

seq1  TACTTTGGCAAGATAGCCATTTTGACTATATTAATCCTGCCAATCCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGCAAGATAGCCATTTTGACTATATTAATCCTGCCAATCCATGA  785

seq1  GCATGGGAGATCTTTCCATCTTCTGAGATCATCTTCGATTTCTTTCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAGATCTTTCCATCTTCTGAGATCATCTTCGATTTCTTTCTTCA  835

seq1  GAGACTTGAAGTTCTTGTTATACAGATCTTTCACTTGCTTGGTGAGAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGAAGTTCTTGTTATACAGATCTTTCACTTGCTTGGTGAGAGTC  885

seq1  ACTCCAAGGTATTTTATATTACTTGTGACTATTGGGAGGATGTTGTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGGTATTTTATATTACTTGTGACTATTGGGAGGATGTTGTTTCC  935

seq1  CTAATTTCTTTTTGAGTAAGGACAAAACAGCTACCAACAGATTGGAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTTTTTGAGTAAGGACAAAACAGCTACCAACAGATTGGAAAAA  985

seq1  GATCTTTACCAATCCTACATCTGTAGATGGCTAATATCCAATATATACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTACCAATCCTACATCTGTAGATGGCTAATATCCAATATATACAA  1035

seq1  AGAACTCAAGAGTTAGAGCTAAACAAAGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGAGTTAGAGCTAAACAAAGAATTC  1068