BAC Information

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BAC

Clone NameB6Ng01-055O10
Chromosome10 (Build37)
Map Location 35,917,146 - 36,023,317
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041585, LOC667860
Downstream geneHs3st5, Hdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055O10.bB6Ng01-055O10.g
ACCDH878221DH878222
length1,145962
definitionDH878221|Mus musculus domesticus DNA, BAC clone: B6Ng01-055O10, 5' end.DH878222|Mus musculus domesticus DNA, BAC clone: B6Ng01-055O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,917,146 - 35,918,314)(36,022,377 - 36,023,317)
sequence
gaattcaaatgtttagcatccatcattgcttaaaatgcatggcagctcag
ggtaggcatgcagacagaagtgggaaggttaaacatagacaatcaattgc
aacaggacacagtgaatgaactggacatggagggttggtagagtttctca
aatccctgcctcggtgagttacttctttcagcaacatggtacctcccaca
agttctataacatcttgcaaagaccactaccaactaaggatgatgtgttc
aaatgataagtccatatggaatatttctcatttcaagcacagcattattt
attctgaagtcatctcgtgggatagttttaaattagagggtcagtattta
tcctgaattttagagaaactattctctattactgaatggttgcttgcttt
tgttaattttaatgcatttttatgtaaagcttcagagtcacacaacatca
ctttttcttgtttttccttttgttttattatacgaaatacaccaatgcat
atcagacaactatagtcatctaaaagacaataccttatgtttattttaca
tttgtatgttggttaaacttaagctctaatgtcagataattccatgttca
tagggttggccacagaagaatggtgtatatcctctttctatggacagatg
aatgctaggaactgccagaggaactacttttgcatagacatcacctctga
tattttgtcccttcacatattgcatctgcctctgatataagcataaatgc
atacatacaaaaggaagcatctgctttctatttaaagaaaaaataatgaa
ttttaaaggtcaatcacaggagaaaaacttattacccaatttccaatgtc
taatatagtctgaaatatataatggaatgatttatttagaaaaactaggc
catccactgtcagcatacacaaatttttatcaggttcaaagagagcagtg
catgtccctcactcattccatgaatccattccctctgtctatcatggatt
atatgtgaactaacagtccatgcatatgattttgttatggacattaaatg
taactgcatagagtcaggttttttctaatttcttttgatggacgcgtagt
gcacattaaagtggctttgcatgataggacccagattctgcttct
gaattcatagctaaatgacatagggagtggaaaattcaatggcaggactt
ggggtaagacatttcactctttattttcatcactcttgctctctaacttc
cctcccctctcctctgtcagagtttccgcaaggtgacctgttttcatttg
ccataacattccccatgatatttctgtcttgtcagagccttaaaggcaaa
ggagccagctgagaatgaactgaagtcactgaaactgtgagctaaatgaa
tatcttcttcttaagctacttcatgaagtactctgccatctcagtagaaa
gctgactcgtatggagtcgtgcaccaaatacaccatacctactatttcaa
aagaaatcatcccattaacttgaatggatgtttgagtccataagagtttg
ttcaaaatagaaaattataattttgagtttaactgttataatcacaaaga
acacaatacagccttaatatctacagtacacattaggaaaattaattgtt
taaaggggtctacattaatatgcagtgttcaaaatgtttttatttgggaa
agaggggtaaagaccagtcaatttttttttttgcattttctttattttca
aggtcgtgtgacaagagaattatttattatcaatgcaaagagtgacaaat
actgactttgctcccactgacccatataatcatcatatttccaatttttc
attgtccaatgttgtgtctataaagatcttactgttttgaccaagtctac
aaacaactcaaacctatatcatgtgctgctgcctggttctcctggagagt
tcgttaattatatgaacgtcagctttctctgtgattgcttctgtggttgt
ccctggcctaacagaagtttctctctctctttcttcctttctttaatttc
tttcttcctccctttcttccttctttcttcttctttcttcttcttctttc
ttcttcttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_35917146_35918314
seq2: B6Ng01-055O10.b_50_1194

seq1  GAATTCAAATGTTTAGCATCCATCATTGCTTAAAATGCATGGCAGCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTTTAGCATCCATCATTGCTTAAAATGCATGGCAGCTCAG  50

seq1  GGTAGGCATGCAGACAGAAGTGGGAAGGTTAAACATAGACAATCAATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCATGCAGACAGAAGTGGGAAGGTTAAACATAGACAATCAATTGC  100

seq1  AACAGGACACAGTGAATGAACTGGACATGGAGGGTTGGTAGAGTTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACACAGTGAATGAACTGGACATGGAGGGTTGGTAGAGTTTCTCA  150

seq1  AATCCCTGCCTCGGTGAGTTACTTCTTTCAGCAACATGGTACCTCCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGCCTCGGTGAGTTACTTCTTTCAGCAACATGGTACCTCCCACA  200

seq1  AGTTCTATAACATCTTGCAAAGACCACTACCAACTAAGGATGATGTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATAACATCTTGCAAAGACCACTACCAACTAAGGATGATGTGTTC  250

seq1  AAATGATAAGTCCATATGGAATATTTCTCATTTCAAGCACAGCATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAAGTCCATATGGAATATTTCTCATTTCAAGCACAGCATTATTT  300

seq1  ATTCTGAAGTCATCTCGTGGGATAGTTTTAAATTAGAGGGTCAGTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGTCATCTCGTGGGATAGTTTTAAATTAGAGGGTCAGTATTTA  350

seq1  TCCTGAATTTTAGAGAAACTATTCTCTATTACTGAATGGTTGCTTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTTTAGAGAAACTATTCTCTATTACTGAATGGTTGCTTGCTTT  400

seq1  TGTTAATTTTAATGCATTTTTATGTAAAGCTTCAGAGTCACACAACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTTTAATGCATTTTTATGTAAAGCTTCAGAGTCACACAACATCA  450

seq1  CTTTTTCTTGTTTTTCCTTTTGTTTTATTATACGAAATACACCAATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTGTTTTTCCTTTTGTTTTATTATACGAAATACACCAATGCAT  500

seq1  ATCAGACAACTATAGTCATCTAAAAGACAATACCTTATGTTTATTTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAACTATAGTCATCTAAAAGACAATACCTTATGTTTATTTTACA  550

seq1  TTTGTATGTTGGTTAAACTTAAGCTCTAATGTCAGATAATTCCATGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTTGGTTAAACTTAAGCTCTAATGTCAGATAATTCCATGTTCA  600

seq1  TAGGGTTGGCCACAGAAGAATGGTGTATATCCTCTTTCTATGGACAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGGCCACAGAAGAATGGTGTATATCCTCTTTCTATGGACAGATG  650

seq1  AATGCTAGGAACTGCCAGAGGAACTACTTTTGCATAGACATCACCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGGAACTGCCAGAGGAACTACTTTTGCATAGACATCACCTCTGA  700

seq1  TATTTTGTCCCTTCACATATTGCATCTGCCTCTGATATAAGCATAAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCCCTTCACATATTGCATCTGCCTCTGATATAAGCATAAATGC  750

seq1  ATACATACAAAAGGAAGCATCTGCTTTCTATTTAAAGAAAAAATAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACAAAAGGAAGCATCTGCTTTCTATTTAAAGAAAAAATAATGAA  800

seq1  TTTTAAAGGTCAATCACAGGAGAAAAACTTATTACCCAATTTCCAATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGTCAATCACAGGAGAAAAACTTATTACCCAATTTCCAATGTC  850

seq1  TAATATAGTCTGAAATATATAATGGAATGATTTATTTAGAAAAACTAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGTCTGAAATATATAATGGAATGATTTATTTAGAAAAACTAGGC  900

seq1  CATCCACTGTCAGCATACACAAATTTTTATCAGGGTTCAAAGAGAGCAGT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATCCACTGTCAGCATACACAAATTTTTATCA-GGTTCAAAGAGAGCAGT  949

seq1  GCATGTCCCTCCACTCATTCCATGAATCCCATTCCCTCCTGTCTATCATT  1000
      |||||||||| |||||||||||||||| ||||||||| ||||||||||| 
seq2  GCATGTCCCT-CACTCATTCCATGAAT-CCATTCCCT-CTGTCTATCAT-  995

seq1  GGAATTATATGTGAACTAACCAGTCCATGCATATGATTTTTGTTATTGGA  1050
       | |||||||||||||||| |||||||||||||||| |||||||| ||||
seq2  -GGATTATATGTGAACTAA-CAGTCCATGCATATGA-TTTTGTTA-TGGA  1041

seq1  CCAATTAAATTGTAAAACTGCATTAGAAGTCAGGGTGTTTCCTATTTCTT  1100
      |  |||||| |||  ||||||| ||| ||||||| | ||||  |||||||
seq2  C--ATTAAA-TGT--AACTGCA-TAG-AGTCAGGTTTTTTCTAATTTCTT  1084

seq1  TTGATGTGACGCGTAGTGCACAATTAAAAAGTGGGCTTTTGCATGATCAG  1150
      |||||| ||||||||||||||| |   |||||||   |||||||||| ||
seq2  TTGATG-GACGCGTAGTGCACATT---AAAGTGG--CTTTGCATGAT-AG  1127

seq1  GAGCTCAGATCCTGCTTCT  1169
      || | ||||| ||||||||
seq2  GA-CCCAGATTCTGCTTCT  1145

seq1: chr10_36022377_36023317
seq2: B6Ng01-055O10.g_67_1018 (reverse)

seq1  AAGAAAGA-----AAGAAAGA--AAGAAAGA---AAGAAAGGGAGGAAGA  40
      ||||||||     ||||||||  ||||||||   ||||||||||||||||
seq2  AAGAAAGAAGAAGAAGAAAGAAGAAGAAAGAAGGAAGAAAGGGAGGAAGA  50

seq1  AAGAAA-TAAAGAAAGGAAGAAAGAGAGAGAGAAACTTCTGTTAGGCCAG  89
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAAAGAAAGGAAGAAAGAGAGAGAGAAACTTCTGTTAGGCCAG  100

seq1  GGACAACCACAGAAGCAATCACAGAGAAAGCTGACGTTCATATAATTAAC  139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCACAGAAGCAATCACAGAGAAAGCTGACGTTCATATAATTAAC  150

seq1  GAACTCTCCAGGAGAACCAGGCAGCAGCACATGATATAGGTTTGAGTTGT  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCCAGGAGAACCAGGCAGCAGCACATGATATAGGTTTGAGTTGT  200

seq1  TTGTAGACTTGGTCAAAACAGTAAGATCTTTATAGACACAACATTGGACA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACTTGGTCAAAACAGTAAGATCTTTATAGACACAACATTGGACA  250

seq1  ATGAAAAATTGGAAATATGATGATTATATGGGTCAGTGGGAGCAAAGTCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATTGGAAATATGATGATTATATGGGTCAGTGGGAGCAAAGTCA  300

seq1  GTATTTGTCACTCTTTGCATTGATAATAAATAATTCTCTTGTCACACGAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTCACTCTTTGCATTGATAATAAATAATTCTCTTGTCACACGAC  350

seq1  CTTGAAAATAAAGAAAATGCAAAAAAAAAAATTGACTGGTCTTTACCCCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATAAAGAAAATGCAAAAAAAAAAATTGACTGGTCTTTACCCCT  400

seq1  CTTTCCCAAATAAAAACATTTTGAACACTGCATATTAATGTAGACCCCTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAAATAAAAACATTTTGAACACTGCATATTAATGTAGACCCCTT  450

seq1  TAAACAATTAATTTTCCTAATGTGTACTGTAGATATTAAGGCTGTATTGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTAATTTTCCTAATGTGTACTGTAGATATTAAGGCTGTATTGT  500

seq1  GTTCTTTGTGATTATAACAGTTAAACTCAAAATTATAATTTTCTATTTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGTGATTATAACAGTTAAACTCAAAATTATAATTTTCTATTTTG  550

seq1  AACAAACTCTTATGGACTCAAACATCCATTCAAGTTAATGGGATGATTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTCTTATGGACTCAAACATCCATTCAAGTTAATGGGATGATTTC  600

seq1  TTTTGAAATAGTAGGTATGGTGTATTTGGTGCACGACTCCATACGAGTCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATAGTAGGTATGGTGTATTTGGTGCACGACTCCATACGAGTCA  650

seq1  GCTTTCTACTGAGATGGCAGAGTACTTCATGAAGTAGCTTAAGAAGAAGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTACTGAGATGGCAGAGTACTTCATGAAGTAGCTTAAGAAGAAGA  700

seq1  TATTCATTTAGCTCACAGTTTCAGTGACTTCAGTTCATTCTCAGCTGGCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTAGCTCACAGTTTCAGTGACTTCAGTTCATTCTCAGCTGGCT  750

seq1  CCTTTGCCTTTAAGGCTCTGACAAGACAGAAATATCATGGGGAATGTTAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTTTAAGGCTCTGACAAGACAGAAATATCATGGGGAATGTTAT  800

seq1  GGCAAATGAAAACAGGTCACCTTGCGGAAACTCTGACAGAGGAGAGGGGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGAAAACAGGTCACCTTGCGGAAACTCTGACAGAGGAGAGGGGA  850

seq1  GGGAAGTTAGAGAGCAAGAGTGATGAAAATAAAGAGTGAAATGTCTTACC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTAGAGAGCAAGAGTGATGAAAATAAAGAGTGAAATGTCTTACC  900

seq1  CCAAGTCCTGCCATTGAATTTTCCACTCCCTATGTCATTTAGCTATGAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCTGCCATTGAATTTTCCACTCCCTATGTCATTTAGCTATGAAT  950

seq1  TC  941
      ||
seq2  TC  952