BAC Information

Click to search

BAC

Clone NameB6Ng01-055P03
Chromosome10 (Build37)
Map Location 30,460,729 - 30,534,293
singlet/doubletdoublet
Overlap geneNcoa7, LOC382354
Upstream geneLOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
Downstream geneHey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055P03.bB6Ng01-055P03.g
ACCDH878254DH878255
length1,1161,134
definitionDH878254|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P03, 5' end.DH878255|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,533,162 - 30,534,293)(30,460,729 - 30,461,874)
sequence
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgtgacccgcagttctggttctggaatgagggatcttccttgcac
cggtgatggtaaactctcgtcccgagttttttctcgtcccggaattcggc
accaattgttattaaacgcgttctcacgaccggccaggaaagacgcaaca
gaccagaatcttctgcggcaaagctttattgcttacatcttcaggagcca
gagtgcaagaagcaagagagagagaaaacgaaaccccgtcccttttttag
gagagttatatttcgcctaggacgtgtcactccctgattggctgcagccc
atcggccgagttgacgtcacggggaaggcagagcacatggagtggagaac
caccctcggcatatgcgcagattatttgtttaccacttagaacacagctg
tcagcgccatcttgtaacggcgaatgtgggcgcggctcccaacacttttg
aattccatttgcaacgtttaagcttgtcaccaagtcacctataatttggc
tgcatgtccttatcagaactcatcctgcattgagtcccagcatgtgttcc
tcatcacagcccaactgctgtagctctctttatgacagatgactgctgtg
gtcactgttatagttgtttttaggtaccaactgcatgagattaagcattc
aataaatgccaatgataaagcacactattgcactgctttgtttgctggag
gaggtgttccacaagaggtagcctgactgtggtgtcttccaatcactgag
atcctggagggaacaaaagccaatcttgtccatgagctgagacactgctt
ttcctgccattggacagcagaattaagactcttggctttgagatttccag
atttatatcagttcacaagcttcagccatgacctaagattatatacagct
tccttgactttgagctttagagtggactgagctcagcactgctgtcccag
ctcttcagcttctaaatgcccagtgtggtactttcatcttatatcacaga
gtcagtcccacaggtgactctcttctcatgtgtctacttaaccagcctac
tatctggagagatgat
gaattctagccaagtcaaacagaagccaggttaccctgagacatggggca
tctgattggaatgtgaaaagaggccattcttgtagaggtgaacacttaac
atctgggcacctgatggaactggggactagacagggattgatatgagacc
tgaactgaataagcaacatccagaaagtaccagagaatcagaaagtacac
atactcctcatttttaccagacaaccaaactcaaacacagcatagaagaa
cacagctggactgctaaagactcattttaagaagcagaattctactgcct
acaagggatagatgaattaacattctctatccaaaagtgttgcttaagat
ccaaatgaatgaacgatgagcattcaagatgcaggtgatccacaggagaa
gctggatttcaggctccctttgaaggcccaggaaacggaacgacagggac
tgatagtaccacacaacaaaacagggtgggacgcagaagcagcagcccct
gctttctccttccttcccagttgtccctcatccatggctgaagattactg
tgtcttccacccgtatgttacagtggattctacagtactattagtcttct
tcggtatttggtcatttcagactaccagaaggccaaagcctcatactgta
cagtgctgctctctgcagaatgacttccaccaagttgcacctcatgccac
ccattttgcctaaggttgttacaataaatttcttctgtgggtgatacaaa
tatgccacattttcttcagtgtccccatgtgcaatcctttgtcatttcac
agaagtaggacacagaaaatgctttgcaaagaactgatgtatgtgtcact
catgaagacatagaaacatgaaaaggattctggtccatactgtcaaaaat
atactttcagactaactacatgaagtttagtgtgtatcttagttagggtt
tcactgtgtgacagacaccatgaccaaggcaattcttataaaggacagtt
cagaggttcagtccattatcacctaagtgagagcatgtagcatcaggaga
catggtgctggaggggtcagaagttctatatcttcattgaaaggagctag
ggccagtcgttcagcagctaggaggaggtctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_30533162_30534293
seq2: B6Ng01-055P03.b_43_1158 (reverse)

seq1  ATCATCT---CAGATAGGTAGCTGGGTAAGTAGACACATAGAAGAAAAGA  47
      |||||||   |||||||   ||||| |||||||||||||    || ||||
seq2  ATCATCTCTCCAGATAGTAGGCTGGTTAAGTAGACACAT----GAGAAGA  46

seq1  GAGTCA-CTGTGGGGACTGACTCTGTGATTATAAAGGATGAAAAGTACCA  96
      |||||| |||| |||||||||||||||| |||||  |||| |||||||||
seq2  GAGTCACCTGT-GGGACTGACTCTGTGA-TATAA--GATG-AAAGTACCA  91

seq1  CACTGGGGCATTTAGAAGCTGAAGAGCCTGGGACAGCAGTGGCTGAGCTC  146
      |||| ||||||||||||||||||||| ||||||||||||| |||||||||
seq2  CACT-GGGCATTTAGAAGCTGAAGAG-CTGGGACAGCAGT-GCTGAGCTC  138

seq1  AGTCCAACTCTTAAAGCCTCAAAGTCAAGGAAGCTGGTATTATAATTCTT  196
      ||||| |||| ||||| |||||||||||||||||| ||| ||||| ||||
seq2  AGTCC-ACTC-TAAAG-CTCAAAGTCAAGGAAGCT-GTA-TATAA-TCTT  182

seq1  AGGTCATGGCTGAAGCCTTGTGAACCTGATATAAATCTGGAAATCTCAAA  246
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  AGGTCATGGCTGAAG-CTTGTGAA-CTGATATAAATCTGGAAATCTCAAA  230

seq1  GCCAAGAGTCTTAATTCTGCTGTCCAATGGCAGGAAAAGCAGTGTCTCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGTCTTAATTCTGCTGTCCAATGGCAGGAAAAGCAGTGTCTCAG  280

seq1  CTCATGGACAAGATTGGCTTTTGTTCCCTCCAGGATCTCAGTGATTGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGACAAGATTGGCTTTTGTTCCCTCCAGGATCTCAGTGATTGGAA  330

seq1  GACACCACAGTCAGGCTACCTCTTGTGGAACACCTCCTCCAGCAAACAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACAGTCAGGCTACCTCTTGTGGAACACCTCCTCCAGCAAACAAA  380

seq1  GCAGTGCAATAGTGTGCTTTATCATTGGCATTTATTGAATGCTTAATCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAATAGTGTGCTTTATCATTGGCATTTATTGAATGCTTAATCTC  430

seq1  ATGCAGTTGGTACCTAAAAACAACTATAACAGTGACCACAGCAGTCATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTGGTACCTAAAAACAACTATAACAGTGACCACAGCAGTCATCT  480

seq1  GTCATAAAGAGAGCTACAGCAGTTGGGCTGTGATGAGGAACACATGCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAAGAGAGCTACAGCAGTTGGGCTGTGATGAGGAACACATGCTGG  530

seq1  GACTCAATGCAGGATGAGTTCTGATAAGGACATGCAGCCAAATTATAGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATGCAGGATGAGTTCTGATAAGGACATGCAGCCAAATTATAGGT  580

seq1  GACTTGGTGACAAGCTTAAACGTTGCAAATGGAATTCAAAAGTGTTGGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTGACAAGCTTAAACGTTGCAAATGGAATTCAAAAGTGTTGGGA  630

seq1  GCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAA  680

seq1  GTGGTAAACAAATAATCTGCGCATATGCCGAGGGTGGTTCTCCACTCCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAACAAATAATCTGCGCATATGCCGAGGGTGGTTCTCCACTCCAT  730

seq1  GTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAAT  780

seq1  CAGGGAGTGACACGTCCTAGGCGAAATATAACTCTCCTAAAAAAGGGACG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTGACACGTCCTAGGCGAAATATAACTCTCCTAAAAAAGGGACG  830

seq1  GGGTTTCGTTTTCTCTCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCGTTTTCTCTCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGAT  880

seq1  GTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTTGCGTCTTTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTTGCGTCTTTCC  930

seq1  TGGCCGGTCGTGAGAACGCGTTTAATAACAATTGGTGCCGAATTCCGGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGGTCGTGAGAACGCGTTTAATAACAATTGGTGCCGAATTCCGGGA  980

seq1  CGAGAAAAAACTCGGGACGAGAGTTTACCATCACCGGTGCAAGGAAGATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAAAAACTCGGGACGAGAGTTTACCATCACCGGTGCAAGGAAGATC  1030

seq1  CCTCATTCCAGAACCAGAACTGCGGGTCACGGTAATAAAGGTTCCCGTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCCAGAACCAGAACTGCGGGTCACGGTAATAAAGGTTCCCGTAA  1080

seq1  AGCAGACTGTTAAGAAGGATTCAACTGCATGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGTTAAGAAGGATTCAACTGCATGAATTC  1116

seq1: chr10_30460729_30461874
seq2: B6Ng01-055P03.g_66_1199

seq1  GAATTCTAGCCAAGTCAAACAGAAGCCAGGTTACCCTGAGACATGGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCAAGTCAAACAGAAGCCAGGTTACCCTGAGACATGGGGCA  50

seq1  TCTGATTGGAATGTGAAAAGAGGCCATTCTTGTAGAGGTGAACACTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGGAATGTGAAAAGAGGCCATTCTTGTAGAGGTGAACACTTAAC  100

seq1  ATCTGGGCACCTGATGGAACTGGGGACTAGACAGGGATTGATATGAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCACCTGATGGAACTGGGGACTAGACAGGGATTGATATGAGACC  150

seq1  TGAACTGAATAAGCAACATCCAGAAAGTACCAGAGAATCAGAAAGTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGAATAAGCAACATCCAGAAAGTACCAGAGAATCAGAAAGTACAC  200

seq1  ATACTCCTCATTTTTACCAGACAACCAAACTCAAACACAGCATAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTCATTTTTACCAGACAACCAAACTCAAACACAGCATAGAAGAA  250

seq1  CACAGCTGGACTGCTAAAGACTCATTTTAAGAAGCAGAATTCTACTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGACTGCTAAAGACTCATTTTAAGAAGCAGAATTCTACTGCCT  300

seq1  ACAAGGGATAGATGAATTAACATTCTCTATCCAAAAGTGTTGCTTAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGATAGATGAATTAACATTCTCTATCCAAAAGTGTTGCTTAAGAT  350

seq1  CCAAATGAATGAACGATGAGCATTCAAGATGCAGGTGATCCACAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAATGAACGATGAGCATTCAAGATGCAGGTGATCCACAGGAGAA  400

seq1  GCTGGATTTCAGGCTCCCTTTGAAGGCCCAGGAAACGGAACGACAGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTTCAGGCTCCCTTTGAAGGCCCAGGAAACGGAACGACAGGGAC  450

seq1  TGATAGTACCACACAACAAAACAGGGTGGGACGCAGAAGCAGCAGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTACCACACAACAAAACAGGGTGGGACGCAGAAGCAGCAGCCCCT  500

seq1  GCTTTCTCCTTCCTTCCCAGTTGTCCCTCATCCATGGCTGAAGATTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCCTTCCTTCCCAGTTGTCCCTCATCCATGGCTGAAGATTACTG  550

seq1  TGTCTTCCACCCGTATGTTACAGTGGATTCTACAGTACTATTAGTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCACCCGTATGTTACAGTGGATTCTACAGTACTATTAGTCTTCT  600

seq1  TCGGTATTTGGTCATTTCAGACTACCAGAAGGCCAAAGCCTCATACTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTATTTGGTCATTTCAGACTACCAGAAGGCCAAAGCCTCATACTGTA  650

seq1  CAGTGCTGCTCTCTGCAGAATGACTTCCACCAAGTTGCACCTCATGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCTCTCTGCAGAATGACTTCCACCAAGTTGCACCTCATGCCAC  700

seq1  CCATTTTGCCTAAGGTTGTTACAATAAATTTCTTCTGTGGGTGATACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGCCTAAGGTTGTTACAATAAATTTCTTCTGTGGGTGATACAAA  750

seq1  TATGCCACATTTTCTTCAGTGTCCCCATGTGCAATCCTTTGTCATTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACATTTTCTTCAGTGTCCCCATGTGCAATCCTTTGTCATTTCAC  800

seq1  AGAAGTAGGACACAGAAAATGCTTTGCAAAGAACTGATGTATGTGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGGACACAGAAAATGCTTTGCAAAGAACTGATGTATGTGTCACT  850

seq1  CATGAAGACATAGAAACATGAAAAGGATTCTGGTCCATACTGTCAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGACATAGAAACATGAAAAGGATTCTGGTCCATACTGTCAAAAAT  900

seq1  ATACTTTCAGACTAACTACATGAAGTTTAGTGTGTATCTTAGTTAGGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAGACTAACTACATGAAGTTTAGTGTGTATCTTAGTTAGGGTT  950

seq1  TCACTGTTGTGAACAGACACCATGACCAAGGCAATTCTTATAAAGGACAA  1000
      |||||| |||| |||||||||||||||||||||||||||||||||||| |
seq2  TCACTG-TGTG-ACAGACACCATGACCAAGGCAATTCTTATAAAGGAC-A  997

seq1  GTTCAGAGGTTCAGTCCATTATCACCTAAGTGAGAGCATGGTAGCATCCA  1050
      ||||||||||||||||||||||||||||||||||||||| ||||||||  
seq2  GTTCAGAGGTTCAGTCCATTATCACCTAAGTGAGAGCAT-GTAGCATC--  1044

seq1  GGGAGACATGGTGCTGGAGGGGCCCAGAGTTCTATATCTTCATTGAAAGG  1100
       ||||||||||||||||||||| |   |||||||||||||||||||||||
seq2  AGGAGACATGGTGCTGGAGGGGTCAGAAGTTCTATATCTTCATTGAAAGG  1094

seq1  AAGCTAGGAGCAAGCCGTTTTCAGGCAGCTAGGAGGAGGGTCTCAA  1146
       ||||||| || || ||  |||| ||||||||||||| ||||||||
seq2  -AGCTAGG-GCCAGTCG--TTCA-GCAGCTAGGAGGA-GGTCTCAA  1134