BAC Information

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BAC

Clone NameB6Ng01-059N07
Chromosome10 (Build37)
Map Location 12,694,892 - 12,807,851
singlet/doubletdoublet
Overlap geneSf3b5
Upstream geneUtrn, LOC665172, Stx11
Downstream genePlagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059N07.bB6Ng01-059N07.g
ACCDH880991DH880992
length203996
definitionDH880991|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N07, 5' end.DH880992|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,807,649 - 12,807,851)(12,694,892 - 12,695,897)
sequence
ttaaaatgtctttatcggtcaggcatggtggctcatgactatgaccctag
caacttaagaggcagaagcaagaagattaggtattcgaggaattcaaagt
cttccttggttacaagggagttcaaggccatactgggctacatgagactc
tagcagggggaaaaagttatacataggggtgtgtgtgtgtgtgtgtgtgt
gtg
gaattctctgtataacatgccagctttgtactcatagagatccacctgcc
tctgactcccaagtgctggaattgaaggagtgagccaccactgcccagca
aaagcccatattcttacagactgataaagaataactttcagtgaagagaa
gtcagatcttccttaagtggatttcaaatggcagttatttatcctctgag
agtgtcatttttataaacagacaaaacatccttacattcatatcctttga
tcattttgggtcaatccctgactctagtttagaaaagatgtacttccaca
ccagaaagccttatgtcgagtttgagcactggtttcttctcttgcttctc
ctcgtccccctgctgaagttctaggagtttagttgtcccattttcccctt
tagtacactcctcagacaaaaatattctttctctgctgagggcttctagc
tgctgtgaatttgtagaatgcagcctgaaagtgtcttgccatgatgctaa
agaaaacgcaaaagtagactatcggcaccacaaaatcctaaactgcttca
aatggggaactgacttacagtgacacagcaaaaacagtgaggctggggcc
atgaagcaggtgagtggagctcagaatgcttgcctagcatcagtgaaagc
cggggtttcatccagagcatccctaagactgggtgtggtggcataatcct
gtcaatcatggcccttgggagctaaaggcaggaagatcaggagttccttg
atgaccctgtcagttcaaggccaaactaggctgaagggaaccccacctta
aaaagccaagcaaatacataagggaaaagtttgacgcctgcgtggagacg
cacagagggaagaggtgggtttttccaatgagacatggctttagggatag
catgcactctggccagataagttctcatccttctcctgggtctgtagctc
ctttccctactcagtgggagttgaaaagaatctgcggtaccttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12807649_12807851
seq2: B6Ng01-059N07.b_53_255 (reverse)

seq1  CACACACACACACACACACACACACCCCTATGTATAACTTTTTCCCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACCCCTATGTATAACTTTTTCCCCCTG  50

seq1  CTAGAGTCTCATGTAGCCCAGTATGGCCTTGAACTCCCTTGTAACCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCTCATGTAGCCCAGTATGGCCTTGAACTCCCTTGTAACCAAGG  100

seq1  AAGACTTTGAATTCCTCGAATACCTAATCTTCTTGCTTCTGCCTCTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTGAATTCCTCGAATACCTAATCTTCTTGCTTCTGCCTCTTAAG  150

seq1  TTGCTAGGGTCATAGTCATGAGCCACCATGCCTGACCGATAAAGACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGGTCATAGTCATGAGCCACCATGCCTGACCGATAAAGACATTT  200

seq1  TAA  203
      |||
seq2  TAA  203

seq1: chr10_12694892_12695897
seq2: B6Ng01-059N07.g_70_1065

seq1  GAATTCTCTGTATAACATGCCAGCTTTGTACTCATAGAGATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTATAACATGCCAGCTTTGTACTCATAGAGATCCACCTGCC  50

seq1  TCTGACTCCCAAGTGCTGGAATTGAAGGAGTGAGCCACCACTGCCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCCAAGTGCTGGAATTGAAGGAGTGAGCCACCACTGCCCAGCA  100

seq1  AAAGCCCATATTCTTACAGACTGATAAAGAATAACTTTCAGTGAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCATATTCTTACAGACTGATAAAGAATAACTTTCAGTGAAGAGAA  150

seq1  GTCAGATCTTCCTTAAGTGGATTTCAAATGGCAGTTATTTATCCTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCTTCCTTAAGTGGATTTCAAATGGCAGTTATTTATCCTCTGAG  200

seq1  AGTGTCATTTTTATAAACAGACAAAACATCCTTACATTCATATCCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCATTTTTATAAACAGACAAAACATCCTTACATTCATATCCTTTGA  250

seq1  TCATTTTGGGTCAATCCCTGACTCTAGTTTAGAAAAGATGTACTTCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGGTCAATCCCTGACTCTAGTTTAGAAAAGATGTACTTCCACA  300

seq1  CCAGAAAGCCTTATGTCGAGTTTGAGCACTGGTTTCTTCTCTTGCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCCTTATGTCGAGTTTGAGCACTGGTTTCTTCTCTTGCTTCTC  350

seq1  CTCGTCCCCCTGCTGAAGTTCTAGGAGTTTAGTTGTCCCATTTTCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCCCCCTGCTGAAGTTCTAGGAGTTTAGTTGTCCCATTTTCCCCTT  400

seq1  TAGTACACTCCTCAGACAAAAATATTCTTTCTCTGCTGAGGGCTTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACACTCCTCAGACAAAAATATTCTTTCTCTGCTGAGGGCTTCTAGC  450

seq1  TGCTGTGAATTTGTAGAATGCAGCCTGAAAGTGTCTTGCCATGATGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAATTTGTAGAATGCAGCCTGAAAGTGTCTTGCCATGATGCTAA  500

seq1  AGAAAACGCAAAAGTAGACTATCGGCACCACAAAATCCTAAACTGCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACGCAAAAGTAGACTATCGGCACCACAAAATCCTAAACTGCTTCA  550

seq1  AATGGGGAACTGACTTACAGTGACACAGCAAAAACAGTGAGGCTGGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAACTGACTTACAGTGACACAGCAAAAACAGTGAGGCTGGGGCC  600

seq1  ATGAAGCAGGTGAGTGGAGCTCAGAATGCTTGCCTAGCATCAGTGAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAGGTGAGTGGAGCTCAGAATGCTTGCCTAGCATCAGTGAAAGC  650

seq1  CGGGGTTTCATCCAGAGCATCCCTAAGACTGGGTGTGGTGGCATAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTTTCATCCAGAGCATCCCTAAGACTGGGTGTGGTGGCATAATCCT  700

seq1  GTCAATCATGGCCCTTGGGAGCTAAAGGCAGGAAGATCAGGAGTTCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCATGGCCCTTGGGAGCTAAAGGCAGGAAGATCAGGAGTTCCTTG  750

seq1  ATGACCCTGTCAGTTCAAGGCCAAACTAGGCTGAAGGGAACCCCACCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGTCAGTTCAAGGCCAAACTAGGCTGAAGGGAACCCCACCTTA  800

seq1  AAAAGCCAAGCAAATACATAAGGGAAAAGATTGACGCCTGCGTGGAGAAC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  AAAAGCCAAGCAAATACATAAGGGAAAAGTTTGACGCCTGCGTGGAG-AC  849

seq1  GCACAGAGGGAAGAGGTGGGTTTTTCCAATGAGGACATGGCTTTAGGGAT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCACAGAGGGAAGAGGTGGGTTTTTCCAATGA-GACATGGCTTTAGGGAT  898

seq1  AGCATGACACTCTGGCCCAGGATAAGCTCTCCATCACTCTCCTGGGTCTG  950
      |||||| ||||||||||   |||||| ||| ||||  |||||||||||||
seq2  AGCATG-CACTCTGGCC--AGATAAGTTCT-CATCCTTCTCCTGGGTCTG  944

seq1  TAGCCCCTTTCCTTACTCAGTTGGGAAGTTGAAAAGGACTCTGCGGTGAC  1000
      |||| ||||||| ||||||||  || ||||||||| || |||||||| ||
seq2  TAGCTCCTTTCCCTACTCAGT--GGGAGTTGAAAA-GAATCTGCGGT-AC  990

seq1  CTTGCA  1006
      ||||||
seq2  CTTGCA  996